Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38466H Brassica oleracea HOM05D000813 ORTHO05D004282 1.3e-79 299.7 147 100.0
A07p29510 Brassica napus HOM05D000813 ORTHO05D004282 2.8e-55 218.8 149 75.2
BraA07t30589Z Brassica rapa HOM05D000813 ORTHO05D004282 2.8e-55 218.8 149 75.2
BraA07t30590Z Brassica rapa HOM05D000813 ORTHO05D004282 3.7e-55 218.4 149 74.5
BcaC05g24571 Brassica carinata HOM05D000813 ORTHO05D004282 1.5e-53 213.0 149 73.8
BcaC08g45601 Brassica carinata HOM05D000813 ORTHO05D004282 3.4e-53 211.8 150 73.3
C06p33560 Brassica napus HOM05D000813 ORTHO05D004282 3.4e-53 211.8 150 73.3
BolC6t38468H Brassica oleracea HOM05D000813 ORTHO05D004282 3.4e-53 211.8 150 73.3
Thhalv10018684m.g Eutrema salsugineum HOM05D000813 ORTHO05D004282 3.8e-52 208.4 149 70.5
AL2G34090 Arabidopsis lyrata HOM05D000813 ORTHO05D004282 1.1e-51 206.8 149 69.1
AT1G74210 Arabidopsis thaliana HOM05D000813 ORTHO05D004282 4.2e-51 204.9 149 69.1
Carub.0002s2100 Capsella rubella HOM05D000813 ORTHO05D004282 9.4e-51 203.8 149 68.5
Sp5g29390 Schrenkiella parvula HOM05D000813 ORTHO05D004282 3.6e-50 201.8 149 68.5
BcaC08g46853 Brassica carinata HOM05D000813 ORTHO05D004282 1.8e-49 199.5 149 67.8
A07p40050 Brassica napus HOM05D000813 ORTHO05D004282 6.7e-49 197.6 149 67.8
BraA07t31549Z Brassica rapa HOM05D000813 ORTHO05D004282 6.7e-49 197.6 149 67.8
C06p33500 Brassica napus HOM05D000813 ORTHO05D004282 1.5e-48 196.4 147 69.4
BolC6t38464H Brassica oleracea HOM05D000813 ORTHO05D004282 1.5e-48 196.4 147 69.4
CARHR067470 Cardamine hirsuta HOM05D000813 ORTHO05D004282 6.3e-47 191.0 150 65.3
C06p48400 Brassica napus HOM05D000813 ORTHO05D004282 3.1e-46 188.7 150 66.0
BolC6t39869H Brassica oleracea HOM05D000813 ORTHO05D004282 3.1e-46 188.7 150 66.0
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 2.5e-43 179.1 128 71.1
Aa31LG4G4500 Aethionema arabicum HOM05D000813 ORTHO05D004282 6.1e-42 174.5 137 61.3
MD14G1212500 Malus domestica HOM05D000813 ORTHO05D004282 3.7e-39 165.2 149 58.4
THA.LOC104812108 Tarenaya hassleriana HOM05D000813 ORTHO05D004282 4.8e-39 164.9 151 57.0
SGA_v2.0_scaffold28G11744 Striga asiatica HOM05D000813 ORTHO05D004282 1.1e-38 163.7 142 57.7
Cc03_g09430 Coffea canephora HOM05D000813 ORTHO05D004282 1.8e-38 162.9 145 55.2
Prupe.5G205800 Prunus persica HOM05D000813 ORTHO05D004282 2.4e-38 162.5 149 57.0
TPR.G2011 Trifolium pratense HOM05D000813 ORTHO05D004282 4.1e-38 161.8 145 56.6
EL10Ac5g11142 Beta vulgaris HOM05D000813 ORTHO05D004282 7.0e-38 161.0 128 63.3
Gohir.D07G072700 Gossypium hirsutum HOM05D000813 ORTHO05D004282 7.0e-38 161.0 150 56.0
Gorai.001G076900 Gossypium raimondii HOM05D000813 ORTHO05D004282 9.1e-38 160.6 150 56.0
GSVIVG01007848001 Vitis vinifera HOM05D000813 ORTHO05D004282 9.1e-38 160.6 153 56.2
Medtr4g109600 Medicago truncatula HOM05D000813 ORTHO05D004282 1.2e-37 160.2 145 55.9
Eucgr.B00602 Eucalyptus grandis HOM05D000813 ORTHO05D004282 2.0e-37 159.5 149 55.0
Gohir.A07G068200 Gossypium hirsutum HOM05D000813 ORTHO05D004282 2.0e-37 159.5 150 56.0
Ah.11g047690 Amaranthus hybridus HOM05D000813 ORTHO05D004282 2.6e-37 159.1 148 56.1
MD06G1225600 Malus domestica HOM05D000813 ORTHO05D004282 2.6e-37 159.1 149 57.7
arahy.Tifrunner.gnm1.ann1.32Y4H5 Arachis hypogaea HOM05D000813 ORTHO05D004282 3.5e-37 158.7 145 56.6
arahy.Tifrunner.gnm1.ann1.LS3LRU Arachis hypogaea HOM05D000813 ORTHO05D004282 3.5e-37 158.7 145 56.6
Migut.N00800 Erythranthe guttata HOM05D000813 ORTHO05D004282 4.5e-37 158.3 149 52.3
Lsat_1_v5_gn_5_22440 Lactuca sativa HOM05D000813 ORTHO05D004282 7.7e-37 157.5 145 53.8
vmacro16492 Vaccinium macrocarpon HOM05D000813 ORTHO05D004282 7.7e-37 157.5 147 53.7
Dinv17421 Davidia involucrata HOM05D000813 ORTHO05D004282 1.3e-36 156.8 146 56.8
Hma1.2p1_0060F.1_g033040 Hydrangea macrophylla HOM05D000813 ORTHO05D004282 1.3e-36 156.8 150 55.3
Actinidia18988 Actinidia chinensis HOM05D000813 ORTHO05D004282 1.7e-36 156.4 147 53.7
C06p33530 Brassica napus HOM05D000813 ORTHO05D004282 1.7e-36 156.4 75 97.3
CSS0001555 Camellia sinensis var. sinensis HOM05D000813 ORTHO05D004282 1.7e-36 156.4 147 56.5
Ca_21767_v3 Cicer arietinum L. HOM05D000813 ORTHO05D004282 1.7e-36 156.4 141 57.4
TWI15G0383 Tripterygium wilfordii HOM05D000813 ORTHO05D004282 1.7e-36 156.4 150 54.0
FAN13G0676 Fragaria x ananassa HOM05D000813 ORTHO05D004282 2.2e-36 156.0 149 55.0
Psat4g047720 Pisum sativum HOM05D000813 ORTHO05D004282 2.2e-36 156.0 145 54.5
Dinv22774 Davidia involucrata HOM05D000813 ORTHO05D004282 2.9e-36 155.6 145 55.2
FvH4_5g13770 Fragaria vesca HOM05D000813 ORTHO05D004282 2.9e-36 155.6 149 55.0
FAN18G2171 Fragaria x ananassa HOM05D000813 ORTHO05D004282 2.9e-36 155.6 149 55.0
Sc04g0004370 Simmondsia chinensis HOM05D000813 ORTHO05D004282 2.9e-36 155.6 125 63.2
Oeu014414.1 Olea europaea HOM05D000813 ORTHO05D004282 3.8e-36 155.2 149 49.7
Aa31LG3G18500 Aethionema arabicum HOM05D000813 ORTHO05D004282 5.0e-36 154.8 126 60.3
Lj4g0013109 Lotus japonicus HOM05D000813 ORTHO05D004282 5.0e-36 154.8 145 55.9
Ciclev10020540m.g Citrus clementina HOM05D000813 ORTHO05D004282 6.5e-36 154.5 149 54.4
Lj5C102G6 Lonicera japonica HOM05D000813 ORTHO05D004282 8.5e-36 154.1 149 53.7
CSS0018238 Camellia sinensis var. sinensis HOM05D000813 ORTHO05D004282 1.1e-35 153.7 142 57.0
CiPaw.11G054200 Carya illinoinensis HOM05D000813 ORTHO05D004282 1.5e-35 153.3 151 53.6
RcHm_v2.0_Chr7g0183171 Rosa chinensis HOM05D000813 ORTHO05D004282 1.5e-35 153.3 149 54.4
vmacro17613 Vaccinium macrocarpon HOM05D000813 ORTHO05D004282 1.5e-35 153.3 147 51.0
CAN.G587.46 Capsicum annuum HOM05D000813 ORTHO05D004282 1.9e-35 152.9 142 52.1
HanXRQChr17g0550211 Helianthus annuus HOM05D000813 ORTHO05D004282 1.9e-35 152.9 123 61.8
Sabra15G0084000 Salix brachista HOM05D000813 ORTHO05D004282 1.9e-35 152.9 149 54.4
CSS0004093 Camellia sinensis var. sinensis HOM05D000813 ORTHO05D004282 3.2e-35 152.1 148 53.4
CSS0048536 Camellia sinensis var. sinensis HOM05D000813 ORTHO05D004282 3.2e-35 152.1 148 53.4
AUR62021548 Chenopodium quinoa HOM05D000813 ORTHO05D004282 3.2e-35 152.1 125 60.0
Duzib084G0602 Durio zibethinus HOM05D000813 ORTHO05D004282 3.2e-35 152.1 149 52.3
Phvul.003G184300 Phaseolus vulgaris HOM05D000813 ORTHO05D004282 3.2e-35 152.1 150 54.7
THA.LOC104818348 Tarenaya hassleriana HOM05D000813 ORTHO05D004282 3.2e-35 152.1 125 58.4
AUR62008545 Chenopodium quinoa HOM05D000813 ORTHO05D004282 4.2e-35 151.8 125 60.0
DCAR_011567 Daucus carota HOM05D000813 ORTHO05D004282 4.2e-35 151.8 149 53.7
Nn4g23438 Nelumbo nucifera HOM05D000813 ORTHO05D004282 4.2e-35 151.8 149 54.4
Cpa.g.sc1086.2 Carica papaya HOM05D000813 ORTHO05D004282 5.5e-35 151.4 151 52.3
Duzib068G0186 Durio zibethinus HOM05D000813 ORTHO05D004282 5.5e-35 151.4 149 53.0
Peaxi162Scf00013g00645 Petunia axillaris HOM05D000813 ORTHO05D004282 5.5e-35 151.4 142 50.7
Manes.06G084100 Manihot esculenta HOM05D000813 ORTHO05D004282 7.2e-35 151.0 148 53.4
Eucgr.B00600 Eucalyptus grandis HOM05D000813 ORTHO05D004282 9.4e-35 150.6 149 52.3
Hund02579 Selenicereus undatus HOM05D000813 ORTHO05D004282 9.4e-35 150.6 147 52.4
Solyc06g069470.3 Solanum lycopersicum HOM05D000813 ORTHO05D004282 9.4e-35 150.6 138 51.4
PGSC0003DMG400004067 Solanum tuberosum HOM05D000813 ORTHO05D004282 9.4e-35 150.6 138 52.2
DCAR_011566 Daucus carota HOM05D000813 ORTHO05D004282 1.2e-34 150.2 149 53.7
Nitab4.5_0001328g0050 Nicotiana tabacum HOM05D000813 ORTHO05D004282 1.2e-34 150.2 138 52.2
Nitab4.5_0007019g0010 Nicotiana tabacum HOM05D000813 ORTHO05D004282 1.2e-34 150.2 138 52.2
QL10p019730 Quercus lobata HOM05D000813 ORTHO05D004282 1.2e-34 150.2 148 54.7
Sopen06g026760 Solanum pennellii HOM05D000813 ORTHO05D004282 1.2e-34 150.2 142 50.0
Atru.chr9.563 Acer truncatum HOM05D000813 ORTHO05D004282 1.6e-34 149.8 154 54.5
CANSAT80G0358 Cannabis sativa HOM05D000813 ORTHO05D004282 1.6e-34 149.8 145 52.4
Haze_07735 Corylus avellana HOM05D000813 ORTHO05D004282 1.6e-34 149.8 144 56.2
Rhsim08G0145400 Rhododendron simsii HOM05D000813 ORTHO05D004282 1.6e-34 149.8 164 48.8
VMungo1215G3378 Vigna mungo HOM05D000813 ORTHO05D004282 1.6e-34 149.8 122 62.3
Cc11_g03870 Coffea canephora HOM05D000813 ORTHO05D004282 2.1e-34 149.4 142 52.8
Lalb_Chr07g0178321 Lupinus albus HOM05D000813 ORTHO05D004282 2.1e-34 149.4 148 54.1
Nn3g17460 Nelumbo nucifera HOM05D000813 ORTHO05D004282 2.1e-34 149.4 149 53.0
Rhsim12G0148700 Rhododendron simsii HOM05D000813 ORTHO05D004282 2.1e-34 149.4 147 53.1
AL6G18380 Arabidopsis lyrata HOM05D000813 ORTHO05D004282 4.7e-34 148.3 126 57.9
AT5G08030 Arabidopsis thaliana HOM05D000813 ORTHO05D004282 4.7e-34 148.3 126 57.9
COL.COLO4_06850 Corchorus olitorius HOM05D000813 ORTHO05D004282 4.7e-34 148.3 149 51.0
Potri.015G058400 Populus trichocarpa HOM05D000813 ORTHO05D004282 4.7e-34 148.3 148 52.0
TAR622G1281 Trochodendron aralioides HOM05D000813 ORTHO05D004282 4.7e-34 148.3 143 53.8
Carub.0006s0692 Capsella rubella HOM05D000813 ORTHO05D004282 6.1e-34 147.9 126 57.1
MSTRG.11336 Avicennia marina HOM05D000813 ORTHO05D004282 8.0e-34 147.5 145 49.7
QL10p019706 Quercus lobata HOM05D000813 ORTHO05D004282 8.0e-34 147.5 148 53.4
Cc00_g07650 Coffea canephora HOM05D000813 ORTHO05D004282 1.0e-33 147.1 142 52.1
Glyma.05G020500 Glycine max HOM05D000813 ORTHO05D004282 1.4e-33 146.7 147 55.1
Glyma.17G078900 Glycine max HOM05D000813 ORTHO05D004282 1.4e-33 146.7 145 55.2
Lalb_Chr13g0302821 Lupinus albus HOM05D000813 ORTHO05D004282 1.4e-33 146.7 148 54.1
SEGI_06758 Sequoiadendron giganteum HOM05D000813 ORTHO05D004282 1.4e-33 146.7 151 51.7
MBI19_g36959_MAGBIO Magnolia biondii HOM05D000813 ORTHO05D004282 1.8e-33 146.4 146 52.7
Aqoxy3G03682 Aquilegia oxysepala HOM05D000813 ORTHO05D004282 2.3e-33 146.0 142 50.7
FAN08G2806 Fragaria x ananassa HOM05D000813 ORTHO05D004282 2.3e-33 146.0 149 53.0
AUR62000729 Chenopodium quinoa HOM05D000813 ORTHO05D004282 3.0e-33 145.6 125 57.6
Manes.14G086100 Manihot esculenta HOM05D000813 ORTHO05D004282 3.0e-33 145.6 145 52.4
Sp6g34910 Schrenkiella parvula HOM05D000813 ORTHO05D004282 3.0e-33 145.6 124 59.7
Thecc.03G102600 Theobroma cacao HOM05D000813 ORTHO05D004282 3.0e-33 145.6 149 51.0
TAR374G1165 Trochodendron aralioides HOM05D000813 ORTHO05D004282 4.0e-33 145.2 151 51.0
unitig_749.g13430 Utricularia gibba HOM05D000813 ORTHO05D004282 5.2e-33 144.8 142 50.0
ATR0177G011 Amborella trichopoda HOM05D000813 ORTHO05D004282 8.8e-33 144.1 145 50.3
CDE04G2471 Ceratophyllum demersum HOM05D000813 ORTHO05D004282 8.8e-33 144.1 146 52.7
HPP92_014049 Vanilla planifolia HOM05D000813 ORTHO05D004282 1.2e-32 143.7 142 52.8
ATR0177G055 Amborella trichopoda HOM05D000813 ORTHO05D004282 2.0e-32 142.9 123 58.5
Haze_11901 Corylus avellana HOM05D000813 ORTHO05D004282 2.6e-32 142.5 150 50.7
QL05p080532 Quercus lobata HOM05D000813 ORTHO05D004282 2.6e-32 142.5 125 56.8
CARHR205150 Cardamine hirsuta HOM05D000813 ORTHO05D004282 4.4e-32 141.7 126 56.3
CiPaw.05G124700 Carya illinoinensis HOM05D000813 ORTHO05D004282 4.4e-32 141.7 150 50.7
Thhalv10013858m.g Eutrema salsugineum HOM05D000813 ORTHO05D004282 4.4e-32 141.7 124 58.1
Sed0001151 Sechium edule HOM05D000813 ORTHO05D004282 5.7e-32 141.4 148 51.4
BcaB08g37299 Brassica carinata HOM05D000813 ORTHO05D004282 7.5e-32 141.0 124 58.1
A10p28600 Brassica napus HOM05D000813 ORTHO05D004282 7.5e-32 141.0 124 58.1
C09p68890 Brassica napus HOM05D000813 ORTHO05D004282 7.5e-32 141.0 124 58.1
BolC9t59635H Brassica oleracea HOM05D000813 ORTHO05D004282 7.5e-32 141.0 124 58.1
Eucgr.G02445 Eucalyptus grandis HOM05D000813 ORTHO05D004282 9.7e-32 140.6 149 51.0
PGR119G0085 Punica granatum HOM05D000813 ORTHO05D004282 9.7e-32 140.6 126 56.3
EL10Ac5g11140 Beta vulgaris HOM05D000813 ORTHO05D004282 1.3e-31 140.2 140 51.4
PSO017G5082 Papaver somniferum HOM05D000813 ORTHO05D004282 1.3e-31 140.2 147 53.1
BraA10t44909Z Brassica rapa HOM05D000813 ORTHO05D004282 1.7e-31 139.8 124 57.3
QL03p074068 Quercus lobata HOM05D000813 ORTHO05D004282 1.7e-31 139.8 125 56.8
QL03p074386 Quercus lobata HOM05D000813 ORTHO05D004282 1.7e-31 139.8 125 56.8
CsaV3_1G006010 Cucumis sativus L. HOM05D000813 ORTHO05D004282 2.2e-31 139.4 150 50.0
Thecc.02G329800 Theobroma cacao HOM05D000813 ORTHO05D004282 3.7e-31 138.7 146 51.4
Os03g0603600 Oryza sativa ssp. japonica HOM05D000813 ORTHO05D004282 4.8e-31 138.3 138 50.0
ECA246G0136 Erigeron canadensis HOM05D000813 ORTHO05D004282 6.3e-31 137.9 122 55.7
Pp3c11_24160 Physcomitrium patens HOM05D000813 ORTHO05D004282 1.1e-30 137.1 126 54.0
Zm00001eb370370 Zea mays HOM05D000813 ORTHO05D004282 1.1e-30 137.1 142 50.0
COL.COLO4_27876 Corchorus olitorius HOM05D000813 ORTHO05D004282 1.4e-30 136.7 125 56.8
PGR083G0437 Punica granatum HOM05D000813 ORTHO05D004282 1.4e-30 136.7 153 50.3
PSO675G9333 Papaver somniferum HOM05D000813 ORTHO05D004282 3.1e-30 135.6 121 57.9
Os01g0763600 Oryza sativa ssp. japonica HOM05D000813 ORTHO05D004282 4.1e-30 135.2 145 49.0
Hund02578 Selenicereus undatus HOM05D000813 ORTHO05D004282 5.3e-30 134.8 125 54.4
Mapoly0019s0036 Marchantia polymorpha HOM05D000813 ORTHO05D004282 5.9e-29 131.3 125 53.6
SHI27088 Sapria himalayana HOM05D000813 ORTHO05D004282 1.3e-28 130.2 123 54.5
unitig_62.g23556 Utricularia gibba HOM05D000016 ORTHO05D004282 1.3e-28 130.2 122 53.3
Zm00001eb050070 Zea mays HOM05D000813 ORTHO05D004282 1.7e-28 129.8 146 46.6
AagrBONN_evm.TU.Sc2ySwM_228.3043 Anthoceros agrestis HOM05D000813 ORTHO05D004282 5.0e-28 128.3 142 45.8
AUR62021550 Chenopodium quinoa HOM05D000813 ORTHO05D004282 8.5e-28 127.5 125 51.2
AUR62008543 Chenopodium quinoa HOM05D000813 ORTHO05D004282 7.2e-27 124.4 125 50.4
Zm00001eb326890 Zea mays HOM05D000813 ORTHO05D004282 4.0e-25 118.6 122 50.8
HPP92_019469 Vanilla planifolia HOM05D000813 ORTHO05D004282 1.2e-24 117.1 116 55.2
ClCG04G011770 Citrullus lanatus HOM05D000813 ORTHO05D004282 2.6e-24 115.9 111 54.1
Os07g0602800 Oryza sativa ssp. japonica HOM05D000813 ORTHO05D004282 7.5e-24 114.4 123 48.8
SMO351G0244 Selaginella moellendorffii HOM05D000813 ORTHO05D004282 1.7e-23 113.2 120 45.8
BcaB08g37296 Brassica carinata HOM05D000813 ORTHO05D004282 1.1e-14 84.0 94 50.0
Actinidia04821 Actinidia chinensis HOM05D000813 ORTHO05D004282 1.2e-10 70.5 81 49.4
Lsat_1_v5_gn_2_74281 Lactuca sativa HOM05D000813 ORTHO05D004282 1.2e-10 70.5 85 44.7
SMO347G0630 Selaginella moellendorffii HOM05D000813 ORTHO05D004282 1.2e-10 70.5 123 38.2
PSO371G0001 Papaver somniferum HOM05D000813 ORTHO05D004282 1.7e-07 60.1 45 62.2
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 2.9e-07 59.3 102 33.3
SGA_v2.0_scaffold25G10954 Striga asiatica HOM05D000813 ORTHO05D004282 8.3e-07 57.8 45 57.8
QL05p066163 Quercus lobata HOM05D000813 ORTHO05D004282 5.4e-06 55.1 45 57.8


User provided reference genes

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