Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38345H Brassica oleracea HOM05D060490 ORTHO05D015467 1.1e-71 273.1 129 100.0
C06p32220 Brassica napus HOM05D060490 ORTHO05D015467 5.5e-71 270.8 129 99.2
BcaC08g47288 Brassica carinata HOM05D000983 ORTHO05D001922 1.2e-14 83.6 213 32.4
A07p41700 Brassica napus HOM05D000983 ORTHO05D001922 1.2e-14 83.6 213 32.4
BolC6t40047H Brassica oleracea HOM05D000983 ORTHO05D001922 1.2e-14 83.6 213 32.4
BraA07t31699Z Brassica rapa HOM05D000983 ORTHO05D001922 1.2e-14 83.6 213 32.4
AT1G76130 Arabidopsis thaliana HOM05D000983 ORTHO05D001922 3.6e-14 82.0 214 30.4
Thhalv10018631m.g Eutrema salsugineum HOM05D000983 ORTHO05D001922 1.2e-12 77.0 213 30.0
TWI56G1107 Tripterygium wilfordii HOM05D000983 ORTHO05D001922 2.2e-11 72.8 214 26.6
Cpa.g.sc26.242 Carica papaya HOM05D000983 ORTHO05D001922 2.9e-11 72.4 214 27.1
QL02p013395 Quercus lobata HOM05D000983 ORTHO05D001922 4.9e-11 71.6 212 25.5
RcHm_v2.0_Chr6g0303841 Rosa chinensis HOM05D000983 ORTHO05D001922 6.4e-11 71.2 214 26.6
CARHR069670 Cardamine hirsuta HOM05D000983 ORTHO05D001922 7.0e-10 67.8 42 71.4
CANSAT25G3388 Cannabis sativa HOM05D000983 ORTHO05D001922 1.2e-09 67.0 213 27.7
Ciclev10001348m.g Citrus clementina HOM05D000983 ORTHO05D001922 1.2e-09 67.0 213 25.4
Rhsim06G0009900 Rhododendron simsii HOM05D000983 ORTHO05D001922 2.0e-09 66.2 213 27.7
MD08G1006000 Malus domestica HOM05D000983 ORTHO05D001922 2.7e-09 65.9 213 26.3
AL2G36170 Arabidopsis lyrata HOM05D000983 ORTHO05D001922 3.5e-09 65.5 42 66.7
BcaC08g47107 Brassica carinata HOM05D000983 ORTHO05D001922 4.6e-09 65.1 41 68.3
BcaNung05115 Brassica carinata HOM05D000983 ORTHO05D001922 4.6e-09 65.1 41 68.3
C06p50080 Brassica napus HOM05D000983 ORTHO05D001922 4.6e-09 65.1 41 68.3
Carub.0002s2301 Capsella rubella HOM05D000983 ORTHO05D001922 4.6e-09 65.1 42 66.7
vmacro21841 Vaccinium macrocarpon HOM05D000983 ORTHO05D001922 4.6e-09 65.1 218 26.1
Actinidia17027 Actinidia chinensis HOM05D000983 ORTHO05D001922 7.8e-09 64.3 199 26.6
Dinv31909 Davidia involucrata HOM05D000983 ORTHO05D001922 1.3e-08 63.5 206 24.3
AUR62013844 Chenopodium quinoa HOM05D000983 ORTHO05D001922 3.0e-08 62.4 169 29.0
PGR142G4423 Punica granatum HOM05D000983 ORTHO05D001922 8.6e-08 60.8 214 24.8
Sp5g31260 Schrenkiella parvula HOM05D000983 ORTHO05D001922 8.6e-08 60.8 41 65.9
Ca_13488_v3 Cicer arietinum L. HOM05D000983 ORTHO05D001922 1.5e-07 60.1 213 28.2
Peaxi162Scf00174g00137 Petunia axillaris HOM05D000983 ORTHO05D001922 1.5e-07 60.1 213 24.9
Eucgr.F03529 Eucalyptus grandis HOM05D000983 ORTHO05D001922 1.9e-07 59.7 213 24.9
FvH4_2g37840 Fragaria vesca HOM05D000983 ORTHO05D001922 2.5e-07 59.3 213 24.9
Sopen04g035730 Solanum pennellii HOM05D000983 ORTHO05D001922 3.3e-07 58.9 213 23.5
TPR.G26412 Trifolium pratense HOM05D000983 ORTHO05D001922 4.3e-07 58.5 213 23.9
Manes.05G141400 Manihot esculenta HOM05D000983 ORTHO05D001922 5.6e-07 58.2 214 24.3
Solyc04g082090.3 Solanum lycopersicum HOM05D000983 ORTHO05D001922 5.6e-07 58.2 213 23.5
Lsat_1_v5_gn_8_29040 Lactuca sativa HOM05D000983 ORTHO05D001922 7.3e-07 57.8 213 25.4
Psat6g001000 Pisum sativum HOM05D000983 ORTHO05D001922 7.3e-07 57.8 213 26.3
Gohir.A06G000800 Gossypium hirsutum HOM05D000983 ORTHO05D001922 1.2e-06 57.0 212 24.5
Lj5g0018308 Lotus japonicus HOM05D000983 ORTHO05D001922 1.2e-06 57.0 214 24.3
Aa31LG4G6250 Aethionema arabicum HOM05D000983 ORTHO05D001922 1.6e-06 56.6 41 61.0
ECA233G4007 Erigeron canadensis HOM05D000983 ORTHO05D001922 1.6e-06 56.6 213 24.9
GSVIVG01008714001 Vitis vinifera HOM05D000983 ORTHO05D001922 1.6e-06 56.6 213 22.1
Phvul.001G001900 Phaseolus vulgaris HOM05D000983 ORTHO05D001922 2.1e-06 56.2 214 23.8
RcHm_v2.0_Chr6g0270761 Rosa chinensis HOM05D000983 ORTHO05D015467 2.1e-06 56.2 36 66.7
THA.LOC104813768 Tarenaya hassleriana HOM05D000983 ORTHO05D001922 2.1e-06 56.2 41 63.4
Medtr1g026170 Medicago truncatula HOM05D000983 ORTHO05D001922 3.6e-06 55.5 213 23.5
Prupe.1G357800 Prunus persica HOM05D000983 ORTHO05D001922 3.6e-06 55.5 41 58.5
RcHm_v2.0_Chr1g0327581 Rosa chinensis HOM05D000983 ORTHO05D015467 3.6e-06 55.5 41 58.5
Thecc.08G054200 Theobroma cacao HOM05D000983 ORTHO05D001922 3.6e-06 55.5 44 56.8
Glyma.14G222600 Glycine max HOM05D000983 ORTHO05D001922 4.7e-06 55.1 213 24.4
Gohir.A05G255400 Gossypium hirsutum HOM05D000983 ORTHO05D001922 4.7e-06 55.1 41 58.5
Gohir.D05G256900 Gossypium hirsutum HOM05D000983 ORTHO05D001922 4.7e-06 55.1 41 58.5
Gorai.009G268400 Gossypium raimondii HOM05D000983 ORTHO05D001922 4.7e-06 55.1 41 58.5
Lalb_Chr19g0131631 Lupinus albus HOM05D000983 ORTHO05D001922 4.7e-06 55.1 214 23.8
CiPaw.07G142000 Carya illinoinensis HOM05D000983 ORTHO05D001922 6.2e-06 54.7 41 56.1
Duzib093G2100 Durio zibethinus HOM05D000983 ORTHO05D001922 6.2e-06 54.7 41 58.5
RcHm_v2.0_Chr3g0496411 Rosa chinensis HOM05D000983 ORTHO05D015467 6.2e-06 54.7 36 63.9
RcHm_v2.0_Chr7g0227001 Rosa chinensis HOM05D000983 ORTHO05D015467 6.2e-06 54.7 36 63.9
RcHm_v2.0_Chr7g0227031 Rosa chinensis HOM05D000983 ORTHO05D015467 6.2e-06 54.7 36 63.9


User provided reference genes

Program Settings