Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 2.7e-123 445.3 214 100.0
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 5.3e-119 431.0 214 97.7
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 9.9e-118 426.8 214 97.2
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 3.7e-96 355.1 194 87.6
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 2.0e-94 349.4 194 86.6
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 2.0e-94 349.4 194 86.1
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 3.4e-94 348.6 198 85.9
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 5.9e-94 347.8 198 83.8
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 7.6e-94 347.4 195 85.1
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 1.7e-93 346.3 194 85.1
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 2.2e-93 345.9 194 85.1
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 2.9e-93 345.5 194 85.6
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 2.9e-93 345.5 194 85.6
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 2.5e-92 342.4 194 84.0
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 4.2e-92 341.7 194 84.0
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 7.9e-91 337.4 194 82.0
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 1.0e-90 337.0 194 86.1
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 3.0e-90 335.5 194 85.6
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 7.4e-89 330.9 194 85.1
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 7.4e-89 330.9 194 85.1
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 1.6e-83 313.2 194 77.3
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 3.3e-73 278.9 155 88.4
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 2.0e-70 269.6 197 63.5
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 1.0e-69 267.3 194 63.9
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 1.3e-69 266.9 194 62.9
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.7e-69 266.5 194 62.9
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.7e-69 266.5 194 62.9
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 4.2e-68 261.9 194 62.9
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 4.2e-68 261.9 194 62.9
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.2e-67 260.4 194 62.9
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 2.7e-67 259.2 195 62.6
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 3.6e-67 258.8 194 62.4
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 8.0e-67 257.7 194 62.9
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 2.8e-64 249.2 194 60.3
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 2.4e-63 246.1 195 62.6
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 4.5e-62 241.9 194 60.3
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 4.5e-62 241.9 195 60.0
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 1.0e-61 240.7 195 60.0
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.0e-61 240.7 195 60.5
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 1.3e-61 240.4 195 60.5
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 5.0e-61 238.4 194 59.3
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 5.0e-61 238.4 195 59.0
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 5.0e-61 238.4 195 60.5
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 6.5e-61 238.0 195 60.0
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 1.1e-60 237.3 258 47.3
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.9e-60 236.5 195 58.5
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 2.5e-60 236.1 195 58.5
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 3.2e-60 235.7 195 58.5
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 3.2e-60 235.7 195 58.5
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 4.2e-60 235.3 194 59.3
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 5.5e-60 235.0 195 59.0
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 1.6e-59 233.4 195 57.4
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 2.1e-59 233.0 195 60.0
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 2.1e-59 233.0 195 59.0
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 2.7e-59 232.6 178 61.2
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 2.7e-59 232.6 195 57.4
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 2.7e-59 232.6 195 57.9
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 2.7e-59 232.6 193 59.1
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 2.7e-59 232.6 195 58.5
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 8.0e-59 231.1 195 56.9
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 8.0e-59 231.1 195 57.9
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.4e-58 230.3 195 57.9
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.3e-58 229.6 195 55.9
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.3e-58 229.6 195 56.4
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.2e-57 227.3 195 55.9
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 2.8e-56 222.6 194 53.1
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 2.4e-55 219.5 194 55.7
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 3.1e-55 219.2 195 56.9
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 3.1e-55 219.2 194 52.1
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 4.5e-54 215.3 193 54.4
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 1.7e-53 213.4 194 53.1
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 2.9e-53 212.6 195 53.3
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 3.8e-53 212.2 112 92.9
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 5.0e-53 211.8 193 53.4
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 8.5e-53 211.1 146 66.4
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 8.5e-53 211.1 193 53.9
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.5e-52 210.3 194 51.0
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 2.5e-52 209.5 192 53.1
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 2.5e-52 209.5 195 52.3
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 3.6e-51 205.7 194 51.0
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.8e-50 203.4 193 53.9
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 4.0e-50 202.2 197 53.3
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 5.2e-50 201.8 193 53.9
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 5.2e-50 201.8 194 51.5
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 8.8e-50 201.1 195 51.3
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 8.8e-50 201.1 195 50.3
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 8.8e-50 201.1 195 50.3
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 1.2e-49 200.7 194 52.6
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 1.5e-49 200.3 194 52.6
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 1.5e-49 200.3 195 47.7
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 4.4e-49 198.7 193 53.4
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 9.8e-49 197.6 195 49.7
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 8.3e-48 194.5 194 46.4
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 1.1e-47 194.1 226 45.1
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 1.4e-47 193.7 196 49.5
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 7.0e-47 191.4 222 47.7
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 9.2e-47 191.0 194 47.4
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 9.2e-47 191.0 147 61.9
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 4.5e-46 188.7 194 52.6
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 7.7e-46 188.0 152 58.6
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 1.0e-45 187.6 222 44.6
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 5.0e-45 185.3 244 41.8
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 8.6e-45 184.5 167 51.5
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.1e-44 184.1 225 42.7
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 4.3e-44 182.2 233 42.9
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 8.0e-43 177.9 219 43.4
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 1.0e-42 177.6 168 50.0
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 1.0e-42 177.6 220 43.6
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 1.4e-42 177.2 209 46.4
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 5.2e-42 175.3 228 43.4
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 5.7e-41 171.8 228 43.0
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 2.9e-40 169.5 194 40.2
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 2.9e-40 169.5 148 56.1
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 6.4e-40 168.3 138 58.7
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 8.3e-40 167.9 228 41.2
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 1.4e-39 167.2 228 41.2
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 1.4e-39 167.2 228 41.7
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 1.2e-38 164.1 210 42.4
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 4.6e-38 162.2 146 51.4
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 5.9e-38 161.8 195 39.0
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 3.0e-37 159.5 246 38.6
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 1.9e-36 156.8 195 45.6
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 2.1e-35 153.3 114 60.5
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.0e-34 151.0 198 41.9
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 8.3e-32 141.4 195 37.9
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 8.3e-32 141.4 195 37.9
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 4.1e-31 139.0 195 42.1
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 5.4e-31 138.7 143 49.0
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.2e-30 137.5 107 57.9
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 6.0e-30 135.2 194 38.7
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.3e-29 134.0 123 51.2
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 4.3e-28 129.0 143 42.7
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 4.3e-28 129.0 171 43.9
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 5.6e-28 128.6 194 39.2
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 7.3e-28 128.3 200 38.0
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 9.5e-28 127.9 87 66.7
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 3.6e-27 125.9 176 39.8
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 8.1e-27 124.8 192 35.4
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 1.8e-26 123.6 195 33.3
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 4.4e-25 119.0 111 48.6
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.7e-24 117.1 116 53.4
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 1.7e-24 117.1 194 32.0
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 4.9e-24 115.5 155 41.3
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 3.2e-23 112.8 136 44.1
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 6.6e-21 105.1 194 33.0
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 5.6e-20 102.1 73 65.8
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 6.8e-18 95.1 117 41.0
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 5.8e-17 92.0 195 33.8
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 7.6e-17 91.7 130 40.8
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 2.7e-14 83.2 202 30.2
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 1.2e-09 67.8 70 45.7
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 9.3e-07 58.2 52 48.1
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 9.3e-07 58.2 49 53.1
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.2e-06 57.8 51 51.0


User provided reference genes

Program Settings