Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 2.3e-190 668.7 334 100.0
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 1.7e-188 662.5 334 99.4
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 3.7e-188 661.4 334 99.1
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 3.4e-181 638.3 336 96.7
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 2.7e-178 628.6 332 94.6
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 1.1e-174 616.7 332 92.8
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 4.4e-173 611.3 329 91.8
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 7.6e-173 610.5 333 92.2
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 9.9e-173 610.1 329 92.7
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 1.6e-170 602.8 329 92.4
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 1.0e-161 573.5 363 79.9
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 2.1e-159 565.8 323 86.4
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 5.5e-147 524.6 333 76.3
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 1.6e-146 523.1 325 77.8
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 3.9e-145 518.5 329 77.5
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 8.7e-145 517.3 330 78.5
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 1.5e-144 516.5 331 75.8
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.3e-143 513.5 328 75.9
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 1.6e-143 513.1 327 77.7
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 1.6e-143 513.1 328 76.8
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 2.8e-143 512.3 327 76.1
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 3.7e-143 511.9 324 76.2
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 4.8e-143 511.5 323 77.4
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 6.2e-143 511.1 323 78.0
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 8.1e-143 510.8 320 76.9
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 1.1e-142 510.4 322 77.3
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 1.1e-142 510.4 329 76.0
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 1.4e-142 510.0 330 75.8
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 3.1e-142 508.8 324 76.2
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 3.1e-142 508.8 320 77.8
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 6.9e-142 507.7 322 76.7
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 9.0e-142 507.3 324 77.2
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 2.0e-141 506.1 334 74.0
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 2.0e-141 506.1 330 76.4
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 2.0e-141 506.1 318 77.0
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 2.6e-141 505.8 326 76.1
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 2.6e-141 505.8 324 77.2
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 2.6e-141 505.8 322 75.2
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 2.6e-141 505.8 327 76.5
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 4.5e-141 505.0 329 75.7
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 4.5e-141 505.0 321 76.0
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 5.8e-141 504.6 325 75.1
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 5.8e-141 504.6 324 75.9
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 5.8e-141 504.6 323 75.2
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 7.6e-141 504.2 324 75.6
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 1.0e-140 503.8 328 75.3
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 1.7e-140 503.1 326 75.8
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.7e-140 503.1 326 75.8
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 2.9e-140 502.3 324 75.3
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 3.8e-140 501.9 322 76.4
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 3.8e-140 501.9 323 75.9
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 3.8e-140 501.9 330 73.9
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 3.8e-140 501.9 326 75.5
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 3.8e-140 501.9 356 71.1
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 6.5e-140 501.1 317 77.3
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 1.1e-139 500.4 326 75.2
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 1.1e-139 500.4 327 74.9
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.1e-139 500.4 328 74.1
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.4e-139 500.0 326 75.2
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 1.4e-139 500.0 328 74.1
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 1.9e-139 499.6 327 74.9
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 1.9e-139 499.6 328 74.1
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 2.5e-139 499.2 323 75.9
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 5.5e-139 498.0 325 75.4
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 2.1e-138 496.1 318 76.4
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 2.1e-138 496.1 325 74.2
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 2.7e-138 495.7 317 77.0
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 3.5e-138 495.4 320 75.3
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 6.0e-138 494.6 319 74.3
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 6.0e-138 494.6 323 73.7
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 7.9e-138 494.2 315 75.2
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 5.1e-137 491.5 324 74.7
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 5.1e-137 491.5 328 73.8
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.5e-136 490.0 324 72.8
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 3.3e-136 488.8 322 72.4
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 3.3e-136 488.8 323 73.7
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 7.4e-136 487.6 326 72.1
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 9.6e-136 487.3 322 73.3
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 9.6e-136 487.3 329 71.4
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 1.6e-135 486.5 326 72.7
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 1.8e-134 483.0 326 72.4
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 2.4e-134 482.6 323 72.1
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 3.1e-134 482.3 329 71.1
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 6.9e-134 481.1 325 72.6
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 1.5e-133 479.9 325 72.3
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 2.0e-133 479.6 307 75.9
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 1.7e-132 476.5 326 69.9
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 1.9e-131 473.0 320 71.9
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 2.3e-129 466.1 326 71.5
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 2.2e-127 459.5 327 68.5
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 4.8e-127 458.4 329 69.9
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 6.9e-126 454.5 291 77.3
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.5e-125 453.4 298 74.2
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.0e-124 450.7 295 76.6
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 8.5e-124 447.6 293 75.8
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 2.5e-123 446.0 289 74.0
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 1.2e-122 443.7 320 67.8
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 2.5e-120 436.0 320 70.6
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 6.3e-119 431.4 292 73.6
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.8e-118 429.9 257 79.4
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.2e-117 427.2 255 79.6
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 3.8e-116 422.2 255 78.8
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 3.3e-112 409.1 344 64.2
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 4.1e-110 402.1 257 75.9
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 2.0e-109 399.8 333 61.3
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 4.7e-106 388.7 278 70.5
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 8.0e-106 387.9 257 73.9
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 8.2e-103 377.9 323 58.2
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 1.4e-102 377.1 326 58.0
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 3.5e-101 372.5 330 57.0
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 1.2e-98 364.0 223 79.8
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 5.2e-97 358.6 228 75.9
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 1.9e-83 313.5 299 54.2
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 3.9e-76 289.3 169 84.0
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 1.1e-75 287.7 214 64.5
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 4.9e-71 272.3 177 75.7
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 4.1e-70 269.2 276 55.4
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 1.7e-60 237.3 206 57.8
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 1.1e-57 228.0 144 74.3
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 3.5e-53 213.0 223 53.8
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 1.6e-50 204.1 323 36.5
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 1.5e-43 181.0 196 51.5
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 4.8e-42 176.0 344 33.7
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.4e-41 174.5 321 39.3
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 1.9e-38 164.1 240 40.0
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 6.7e-36 155.6 106 69.8
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 1.4e-33 147.9 114 63.2
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 4.0e-33 146.4 316 34.2
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 2.6e-32 143.7 230 47.4
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 1.0e-20 105.1 57 87.7
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 1.9e-14 84.3 251 30.3
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 2.1e-13 80.9 98 45.9
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 4.6e-13 79.7 45 80.0
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 2.5e-11 73.9 69 56.5
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 2.4e-09 67.4 78 46.2
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 1.9e-06 57.8 41 61.0


User provided reference genes

Program Settings