Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 6.2e-194 680.6 348 100.0
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 1.1e-193 679.9 348 99.7
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 1.4e-193 679.5 348 99.7
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 2.4e-193 678.7 348 99.4
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 1.2e-192 676.4 348 99.4
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.4e-190 669.5 347 97.7
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 2.9e-183 645.2 347 95.1
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.3e-180 636.3 346 93.1
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.9e-179 632.5 346 93.4
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 3.3e-179 631.7 347 93.1
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 6.2e-178 627.5 347 92.2
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 6.2e-178 627.5 347 92.2
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 1.4e-177 626.3 347 92.2
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 1.4e-177 626.3 347 93.1
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 3.5e-173 611.7 351 88.6
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.3e-170 603.2 346 88.4
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 1.6e-170 602.8 346 88.2
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 4.8e-170 601.3 346 88.4
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.4e-169 599.7 346 87.9
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.4e-169 599.7 354 88.4
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 9.0e-169 597.0 324 92.6
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 2.6e-168 595.5 346 87.0
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 9.3e-166 587.0 346 86.4
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 1.6e-165 586.3 326 88.7
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 4.6e-165 584.7 326 89.9
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 3.9e-164 581.6 327 87.2
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 5.1e-164 581.3 337 85.8
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 1.1e-163 580.1 325 88.3
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.9e-163 579.3 342 84.5
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 5.7e-163 577.8 342 84.2
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 9.6e-163 577.0 326 87.1
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 1.3e-162 576.6 327 85.9
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 2.1e-162 575.9 327 88.1
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 2.8e-162 575.5 346 83.2
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 1.1e-161 573.5 346 83.8
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 1.1e-161 573.5 328 86.0
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 2.4e-161 572.4 339 85.0
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 2.4e-161 572.4 346 82.9
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 4.1e-161 571.6 346 83.2
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 4.1e-161 571.6 331 86.1
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 5.3e-161 571.2 348 82.2
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 6.9e-161 570.9 327 86.5
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 1.2e-160 570.1 323 87.3
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 1.2e-160 570.1 349 82.8
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 1.5e-160 569.7 325 87.1
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 3.4e-160 568.5 325 86.8
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 4.5e-160 568.2 326 85.6
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 4.5e-160 568.2 345 82.9
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 7.6e-160 567.4 346 82.1
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 7.6e-160 567.4 327 85.6
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 1.0e-159 567.0 327 85.9
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 1.7e-159 566.2 327 84.1
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.8e-159 565.1 328 85.4
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 8.4e-159 563.9 343 83.1
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 8.4e-159 563.9 328 85.4
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.1e-158 563.5 343 83.1
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 1.4e-158 563.1 325 85.2
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.9e-158 562.8 328 84.5
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 1.9e-158 562.8 327 83.5
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 2.5e-158 562.4 349 80.8
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 2.5e-158 562.4 327 85.0
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 3.2e-158 562.0 328 84.5
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 4.2e-158 561.6 330 85.2
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 7.2e-158 560.8 326 85.0
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.2e-158 560.8 343 82.8
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.2e-158 560.8 343 82.8
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 1.6e-157 559.7 327 85.3
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 1.6e-157 559.7 326 83.7
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 3.5e-157 558.5 329 84.8
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 4.6e-157 558.1 363 78.5
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 7.9e-157 557.4 322 86.3
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 3.0e-156 555.4 324 84.3
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.1e-156 554.7 360 79.4
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.7e-156 554.3 343 81.6
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.9e-155 552.7 331 82.2
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.9e-155 552.7 331 82.2
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.4e-153 546.6 325 83.4
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 3.1e-153 545.4 327 83.2
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 4.1e-153 545.0 340 80.0
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 5.3e-153 544.7 327 82.0
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 1.2e-152 543.5 324 82.1
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 2.6e-152 542.3 327 81.7
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 3.4e-152 542.0 341 80.1
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 5.9e-152 541.2 323 82.4
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 7.7e-152 540.8 346 82.4
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 1.7e-151 539.7 326 82.5
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 2.2e-151 539.3 357 76.5
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 5.0e-151 538.1 344 80.5
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 1.4e-150 536.6 338 79.3
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 1.4e-150 536.6 329 81.2
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 5.5e-150 534.6 325 82.2
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 1.6e-149 533.1 327 80.4
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 2.1e-149 532.7 324 80.6
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 1.4e-148 530.0 352 76.4
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 3.0e-148 528.9 328 79.3
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 1.5e-147 526.6 346 77.2
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 1.5e-147 526.6 370 73.2
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 2.5e-147 525.8 327 78.9
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.5e-147 525.8 301 85.4
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.5e-147 525.8 327 81.3
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 9.7e-147 523.9 325 80.0
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.1e-145 520.4 322 79.5
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.5e-144 516.5 354 75.1
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 1.5e-144 516.5 297 86.9
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 6.5e-143 511.1 388 68.8
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 3.9e-140 501.9 380 69.7
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 2.6e-139 499.2 351 74.6
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 2.8e-138 495.7 353 71.7
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 2.4e-137 492.7 329 75.4
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 2.0e-136 489.6 337 74.8
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 2.0e-136 489.6 324 71.9
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 2.9e-135 485.7 287 83.3
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 5.2e-132 474.9 347 75.2
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 1.7e-127 459.9 347 70.9
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 3.8e-127 458.8 259 89.2
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 1.1e-126 457.2 349 66.2
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 1.2e-125 453.8 341 66.0
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 4.0e-124 448.7 324 67.0
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 1.5e-123 446.8 306 73.5
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 5.7e-123 444.9 326 67.8
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.3e-122 443.7 367 65.4
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.7e-122 443.4 326 67.5
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 5.4e-121 438.3 301 72.1
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 2.7e-120 436.0 315 68.9
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 3.8e-119 432.2 287 78.0
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.5e-118 429.5 259 82.6
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 4.7e-117 425.2 326 64.1
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 2.6e-115 419.5 342 60.8
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 6.3e-114 414.8 248 83.5
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.5e-110 403.7 353 63.2
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 2.3e-108 396.4 246 82.1
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.8e-108 394.8 362 59.4
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 6.8e-108 394.8 241 81.7
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 4.9e-106 388.7 267 74.5
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.1e-105 387.5 275 71.6
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 2.0e-104 383.3 306 63.4
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 3.0e-103 379.4 274 66.8
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 7.3e-102 374.8 245 74.7
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.0e-100 370.9 350 60.0
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 2.6e-99 366.3 240 78.3
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 3.7e-98 362.5 233 76.8
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 1.3e-95 354.0 338 54.7
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.1e-92 344.4 197 87.8
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.9e-73 280.4 285 57.9
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.2e-72 277.7 203 72.4
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 1.3e-61 241.1 338 43.2
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 9.0e-60 235.0 160 69.4
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 1.3e-58 231.1 140 77.1
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.5e-54 216.9 137 78.8
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 8.1e-53 211.8 336 44.6
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 8.1e-53 211.8 129 79.8
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 9.0e-52 208.4 251 51.4
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 1.1e-49 201.4 113 85.0
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 6.3e-45 185.7 236 41.5
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 2.5e-41 173.7 217 45.6
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 8.7e-39 165.2 104 76.0
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 6.9e-36 155.6 88 81.8
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.4e-35 153.3 92 79.3
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 5.9e-35 152.5 97 71.1
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 3.8e-34 149.8 96 81.2
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 2.5e-33 147.1 110 71.8
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 1.2e-32 144.8 96 70.8
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 4.8e-29 132.9 189 49.7
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 4.8e-29 132.9 76 82.9
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 2.5e-25 120.6 77 77.9
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 2.5e-25 120.6 84 65.5
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 2.0e-22 110.9 73 65.8
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 4.1e-20 103.2 90 62.2
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 7.0e-20 102.4 72 66.7
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 4.5e-19 99.8 63 82.5
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 1.3e-18 98.2 62 79.0
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.9e-17 94.4 75 58.7
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 2.1e-16 90.9 78 67.9
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 8.0e-08 62.4 81 49.4


User provided reference genes

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