Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37679H Brassica oleracea HOM05D004132 ORTHO05D006273 3.7e-100 368.2 188 100.0
BcaB02g07547 Brassica carinata HOM05D004132 ORTHO05D006273 9.5e-56 220.7 191 67.5
C06p25160 Brassica napus HOM05D004132 ORTHO05D006273 1.2e-55 220.3 191 67.0
BcaC08g44901 Brassica carinata HOM05D004132 ORTHO05D006273 3.6e-55 218.8 191 66.5
BolC6t37674H Brassica oleracea HOM05D004132 ORTHO05D006273 4.7e-55 218.4 191 66.5
A07p23930 Brassica napus HOM05D004132 ORTHO05D006273 1.0e-54 217.2 191 66.5
BraA07t30044Z Brassica rapa HOM05D004132 ORTHO05D006273 1.4e-54 216.9 191 66.0
A09p50920 Brassica napus HOM05D004132 ORTHO05D006273 1.3e-52 210.3 190 64.7
BraA09t40538Z Brassica rapa HOM05D004132 ORTHO05D006273 1.3e-52 210.3 190 64.7
Sp5g04580 Schrenkiella parvula HOM05D004132 ORTHO05D006273 1.7e-52 209.9 191 64.4
AL5G39830 Arabidopsis lyrata HOM05D004132 ORTHO05D006273 1.1e-51 207.2 191 62.8
BcaC07g40186 Brassica carinata HOM05D004132 ORTHO05D006273 7.0e-51 204.5 192 62.5
Carub.0005s2499 Capsella rubella HOM05D004132 ORTHO05D006273 7.0e-51 204.5 191 62.3
CARHR168500 Cardamine hirsuta HOM05D004132 ORTHO05D006273 1.6e-50 203.4 191 61.8
Thhalv10005992m.g Eutrema salsugineum HOM05D004132 ORTHO05D006273 1.6e-50 203.4 191 62.3
BolC8t50964H Brassica oleracea HOM05D004132 ORTHO05D006273 2.3e-49 199.5 191 62.8
BcaC07g40275 Brassica carinata HOM05D004132 ORTHO05D006273 3.0e-49 199.1 191 62.3
C08p33670 Brassica napus HOM05D004132 ORTHO05D006273 3.0e-49 199.1 191 62.3
AT3G58140 Arabidopsis thaliana HOM05D004132 ORTHO05D006273 9.5e-48 194.1 191 60.7
Aa31LG10G12860 Aethionema arabicum HOM05D004132 ORTHO05D006273 6.8e-46 188.0 191 57.6
THA.LOC104826464 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 2.3e-41 172.9 189 52.9
THA.LOC104800472 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 1.6e-39 166.8 188 51.6
A07p23940 Brassica napus HOM05D000122 ORTHO05D000139 7.5e-37 157.9 102 81.4
C06p25210 Brassica napus HOM05D000122 ORTHO05D000139 8.3e-36 154.5 83 92.8
Potri.013G105200 Populus trichocarpa HOM05D004132 ORTHO05D006273 1.3e-28 130.6 191 43.5
Sabra13G0090900 Salix brachista HOM05D004132 ORTHO05D006273 1.3e-28 130.6 191 43.5
BraA07t30045Z Brassica rapa HOM05D000122 ORTHO05D000139 1.7e-28 130.2 79 87.3
FvH4_3g12680 Fragaria vesca HOM05D004132 ORTHO05D006273 3.8e-28 129.0 189 40.2
VMungo1383G0131 Vigna mungo HOM05D004132 ORTHO05D006273 4.9e-28 128.6 190 43.2
CiPaw.09G074000 Carya illinoinensis HOM05D004132 ORTHO05D006273 1.1e-27 127.5 197 43.7
Lalb_Chr17g0336121 Lupinus albus HOM05D004132 ORTHO05D006273 1.1e-27 127.5 194 43.8
FAN16G0015 Fragaria x ananassa HOM05D004132 ORTHO05D006273 1.9e-27 126.7 189 40.2
Cpa.g.sc84.15 Carica papaya HOM05D004132 ORTHO05D006273 3.2e-27 125.9 189 42.3
FAN21G3660 Fragaria x ananassa HOM05D004132 ORTHO05D035098 3.2e-27 125.9 189 40.2
GSVIVG01010923001 Vitis vinifera HOM05D004132 ORTHO05D006273 3.2e-27 125.9 189 41.8
CANSAT78G2113 Cannabis sativa HOM05D004132 ORTHO05D006273 4.1e-27 125.6 172 45.9
Atru.chr3.3175 Acer truncatum HOM05D004132 ORTHO05D006273 9.2e-27 124.4 197 42.6
Cc09_g05560 Coffea canephora HOM05D004132 ORTHO05D006273 9.2e-27 124.4 197 38.6
Phvul.008G010100 Phaseolus vulgaris HOM05D004132 ORTHO05D006273 9.2e-27 124.4 190 42.6
Ciclev10011787m.g Citrus clementina HOM05D004132 ORTHO05D006273 2.1e-26 123.2 183 41.5
Glyma.18G291800 Glycine max HOM05D004132 ORTHO05D006273 2.1e-26 123.2 190 41.6
GSVIVG01020335001 Vitis vinifera HOM05D004132 ORTHO05D006273 2.1e-26 123.2 184 41.8
FAN25G0118 Fragaria x ananassa HOM05D004132 ORTHO05D006273 3.5e-26 122.5 189 40.2
Lj6g0002780 Lotus japonicus HOM05D004132 ORTHO05D006273 3.5e-26 122.5 194 42.8
Nn6g34644 Nelumbo nucifera HOM05D004132 ORTHO05D006273 4.6e-26 122.1 164 43.9
RcHm_v2.0_Chr5g0020641 Rosa chinensis HOM05D004132 ORTHO05D006273 4.6e-26 122.1 190 40.0
TAR626G0350 Trochodendron aralioides HOM05D004132 ORTHO05D006273 4.6e-26 122.1 164 45.7
AUR62013238 Chenopodium quinoa HOM05D004132 ORTHO05D006273 6.0e-26 121.7 187 43.9
Glyma.02G091300 Glycine max HOM05D004132 ORTHO05D006273 7.8e-26 121.3 190 41.1
GSVIVG01020339001 Vitis vinifera HOM05D004132 ORTHO05D006273 7.8e-26 121.3 184 41.3
Prupe.4G115500 Prunus persica HOM05D004132 ORTHO05D006273 1.0e-25 120.9 197 39.6
GSVIVG01020319001 Vitis vinifera HOM05D004132 ORTHO05D035098 1.0e-25 120.9 169 42.6
Cfa000667 Carpinus fangiana HOM05D004132 ORTHO05D006273 1.3e-25 120.6 194 40.7
Psat3g096280 Pisum sativum HOM05D004132 ORTHO05D006273 1.3e-25 120.6 190 41.1
MELO3C007024.2 Cucumis melo HOM05D004132 ORTHO05D006273 1.7e-25 120.2 189 40.7
Dinv25393 Davidia involucrata HOM05D004132 ORTHO05D006273 1.7e-25 120.2 193 41.5
PSO063G4358 Papaver somniferum HOM05D004132 ORTHO05D006273 1.7e-25 120.2 173 43.4
ClCG01G025610 Citrullus lanatus HOM05D004132 ORTHO05D006273 2.3e-25 119.8 189 40.7
Medtr7g083030 Medicago truncatula HOM05D004132 ORTHO05D006273 3.0e-25 119.4 192 42.2
Sc08g0001660 Simmondsia chinensis HOM05D004132 ORTHO05D006273 5.1e-25 118.6 183 41.5
PSO421G0604 Papaver somniferum HOM05D004132 ORTHO05D006273 6.6e-25 118.2 173 42.8
SGA_v2.0_scaffold298G47699 Striga asiatica HOM05D004132 ORTHO05D006273 8.6e-25 117.9 191 41.4
CSS0017532 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D006273 1.1e-24 117.5 193 40.4
RcHm_v2.0_Chr3g0486261 Rosa chinensis HOM05D004132 ORTHO05D006273 1.1e-24 117.5 191 39.8
Manes.12G056400 Manihot esculenta HOM05D004132 ORTHO05D006273 1.5e-24 117.1 166 42.8
Ah.06g194990 Amaranthus hybridus HOM05D004132 ORTHO05D006273 1.9e-24 116.7 187 43.9
AUR62010256 Chenopodium quinoa HOM05D004132 ORTHO05D006273 1.9e-24 116.7 185 42.7
CsaV3_6G052840 Cucumis sativus L. HOM05D004132 ORTHO05D006273 1.9e-24 116.7 189 40.7
Eucgr.C02393 Eucalyptus grandis HOM05D004132 ORTHO05D006273 2.5e-24 116.3 193 39.4
QL04p095526 Quercus lobata HOM05D004132 ORTHO05D006273 2.5e-24 116.3 197 40.1
MBI07_g09898_MAGBIO Magnolia biondii HOM05D004132 ORTHO05D006273 3.3e-24 115.9 186 43.5
Gohir.A10G126900 Gossypium hirsutum HOM05D004132 ORTHO05D006273 4.3e-24 115.5 191 41.4
arahy.Tifrunner.gnm1.ann1.KJS3LB Arachis hypogaea HOM05D004132 ORTHO05D006273 5.6e-24 115.2 188 41.5
arahy.Tifrunner.gnm1.ann1.L32XPY Arachis hypogaea HOM05D004132 ORTHO05D006273 5.6e-24 115.2 188 41.5
Hund06337 Selenicereus undatus HOM05D004132 ORTHO05D006273 7.3e-24 114.8 190 41.1
Gohir.D10G139300 Gossypium hirsutum HOM05D004132 ORTHO05D006273 9.6e-24 114.4 191 40.8
Gorai.011G155000 Gossypium raimondii HOM05D004132 ORTHO05D006273 9.6e-24 114.4 191 40.8
TWI59G0283 Tripterygium wilfordii HOM05D004132 ORTHO05D006273 9.6e-24 114.4 160 44.4
SGA_v2.0_scaffold175G39350 Striga asiatica HOM05D004132 ORTHO05D006273 1.2e-23 114.0 190 41.6
COL.COLO4_20206 Corchorus olitorius HOM05D004132 ORTHO05D006273 1.6e-23 113.6 191 41.9
Sed0002662 Sechium edule HOM05D004132 ORTHO05D006273 2.1e-23 113.2 187 40.1
CDE05G2281 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 2.8e-23 112.8 178 40.4
Haze_06152 Corylus avellana HOM05D004132 ORTHO05D006273 2.8e-23 112.8 224 37.1
MD05G1248600 Malus domestica HOM05D004132 ORTHO05D006273 4.7e-23 112.1 197 38.6
Hund00133 Selenicereus undatus HOM05D004132 ORTHO05D006273 4.7e-23 112.1 185 42.2
Zm00001eb371320 Zea mays HOM05D004132 ORTHO05D006273 4.7e-23 112.1 139 44.6
Ca_06096_v3 Cicer arietinum L. HOM05D004132 ORTHO05D006273 6.2e-23 111.7 189 39.2
MD10G1229100 Malus domestica HOM05D004132 ORTHO05D006273 6.2e-23 111.7 191 37.7
HanXRQChr12g0367151 Helianthus annuus HOM05D004132 ORTHO05D006273 8.1e-23 111.3 172 41.3
Rhsim04G0004400 Rhododendron simsii HOM05D004132 ORTHO05D006273 8.1e-23 111.3 201 39.3
DCAR_001290 Daucus carota HOM05D004132 ORTHO05D006273 1.1e-22 110.9 184 39.1
Eucgr.C02274 Eucalyptus grandis HOM05D004132 ORTHO05D006273 1.1e-22 110.9 162 42.0
Zm00001eb153980 Zea mays HOM05D004132 ORTHO05D006273 1.1e-22 110.9 187 38.0
Aqoxy7G00307 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 1.4e-22 110.5 144 44.4
CAN.G1921.3 Capsicum annuum HOM05D004132 ORTHO05D006273 1.4e-22 110.5 187 38.0
Hma1.2p1_0325F.1_g126090 Hydrangea macrophylla HOM05D004132 ORTHO05D006273 1.4e-22 110.5 195 39.0
Nitab4.5_0000582g0060 Nicotiana tabacum HOM05D004132 ORTHO05D006273 1.4e-22 110.5 189 37.6
Thecc.04G197300 Theobroma cacao HOM05D004132 ORTHO05D006273 1.4e-22 110.5 191 41.4
CDE05G2803 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 1.8e-22 110.2 177 40.7
Nitab4.5_0004719g0050 Nicotiana tabacum HOM05D004132 ORTHO05D006273 1.8e-22 110.2 189 37.6
EL10Ac9g22320 Beta vulgaris HOM05D004132 ORTHO05D006273 3.1e-22 109.4 184 40.8
Os12g0533700 Oryza sativa ssp. japonica HOM05D004132 ORTHO05D006273 3.1e-22 109.4 186 40.3
ECA232G2283 Erigeron canadensis HOM05D004132 ORTHO05D006273 4.0e-22 109.0 169 39.1
Solyc05g056260.2 Solanum lycopersicum HOM05D004132 ORTHO05D006273 4.0e-22 109.0 144 41.0
Sopen05g034650 Solanum pennellii HOM05D004132 ORTHO05D006273 4.0e-22 109.0 192 37.5
PGSC0003DMG400023334 Solanum tuberosum HOM05D004132 ORTHO05D006273 4.0e-22 109.0 192 37.5
PGR102G2051 Punica granatum HOM05D004132 ORTHO05D006273 5.2e-22 108.6 196 37.2
Aqoxy2G02279 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 6.9e-22 108.2 139 44.6
SalBow7G0375 Salvia bowleyana HOM05D004132 ORTHO05D006273 6.9e-22 108.2 187 40.1
Duzib151G0861 Durio zibethinus HOM05D004132 ORTHO05D006273 9.0e-22 107.8 191 40.3
Migut.D01293 Erythranthe guttata HOM05D004132 ORTHO05D006273 2.0e-21 106.7 168 43.5
AagrBONN_evm.TU.Sc2ySwM_344.2605 Anthoceros agrestis HOM05D004132 ORTHO05D006273 3.4e-21 105.9 137 43.8
SEGI_05248 Sequoiadendron giganteum HOM05D004132 ORTHO05D006273 4.4e-21 105.5 182 37.9
MSTRG.16365 Avicennia marina HOM05D004132 ORTHO05D006273 7.6e-21 104.8 164 40.9
SMO361G0681 Selaginella moellendorffii HOM05D004132 ORTHO05D006273 7.6e-21 104.8 139 42.4
Mapoly0072s0003 Marchantia polymorpha HOM05D004132 ORTHO05D006273 9.9e-21 104.4 137 41.6
Oeu056055.1 Olea europaea HOM05D004132 ORTHO05D006273 9.9e-21 104.4 138 42.8
Lsat_1_v5_gn_8_118000 Lactuca sativa HOM05D004132 ORTHO05D006273 1.3e-20 104.0 185 37.8
ATR0215G010 Amborella trichopoda HOM05D004132 ORTHO05D006273 1.7e-20 103.6 179 39.1
HPP92_026254 Vanilla planifolia HOM05D004132 ORTHO05D006273 1.7e-20 103.6 140 43.6
Pp3c5_15740 Physcomitrium patens HOM05D004132 ORTHO05D006273 2.2e-20 103.2 137 44.5
Ah.04g159510 Amaranthus hybridus HOM05D004132 ORTHO05D006273 3.8e-20 102.4 190 40.0
TPR.G28546 Trifolium pratense HOM05D004132 ORTHO05D006273 7.1e-19 98.2 119 46.2
Peaxi162Scf00858g00012 Petunia axillaris HOM05D004132 ORTHO05D006273 9.3e-19 97.8 119 44.5
unitig_37.g12049 Utricularia gibba HOM05D004132 ORTHO05D006273 2.7e-18 96.3 119 46.2
GSVIVG01020347001 Vitis vinifera HOM05D004132 ORTHO05D006273 4.6e-18 95.5 120 45.8
Oeu056054.1 Olea europaea HOM05D004132 ORTHO05D006273 2.3e-17 93.2 119 44.5
PRCOL_00002437 Prasinoderma coloniale HOM05D004132 ORTHO05D006273 2.1e-15 86.7 133 37.6
TAR627G1059 Trochodendron aralioides HOM05D004132 ORTHO05D006273 2.1e-15 86.7 102 50.0
CBR_g19753 Chara braunii HOM05D004132 ORTHO05D006273 2.8e-15 86.3 119 41.2
MCO13G295 Micromonas commoda HOM05D004132 ORTHO05D006273 2.6e-13 79.7 129 38.8
Cre02.g079600 Chlamydomonas reinhardtii HOM05D004132 ORTHO05D006273 1.4e-11 73.9 115 39.1
Lj5g0016492 Lotus japonicus HOM05D004132 ORTHO05D006273 4.6e-10 68.9 102 39.2
CSS0033836 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D018840 1.3e-09 67.4 103 39.8
Duzib212G0380 Durio zibethinus HOM05D004132 ORTHO05D035098 2.5e-08 63.2 82 46.3
Dinv31163 Davidia involucrata HOM05D004132 ORTHO05D006273 1.6e-07 60.5 34 79.4
Duzib212G0992 Durio zibethinus HOM05D004132 ORTHO05D006273 4.8e-07 58.9 57 52.6
HanXRQChr09g0260421 Helianthus annuus HOM05D004132 ORTHO05D006273 1.1e-06 57.8 34 67.6
QL04p095492 Quercus lobata HOM05D004132 ORTHO05D018840 5.3e-06 55.5 30 80.0


User provided reference genes

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