Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.2e-189 666.4 346 100.0
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.2e-189 666.4 346 100.0
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.2e-189 666.4 346 100.0
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 9.9e-184 646.7 346 97.1
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 9.9e-184 646.7 346 97.1
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 3.6e-162 575.1 350 87.7
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 2.5e-62 243.4 508 37.4
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 5.6e-62 242.3 414 41.3
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.1e-57 228.0 460 38.0
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 2.1e-56 223.8 478 36.0
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.3e-55 221.1 506 36.6
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 1.7e-55 220.7 484 35.1
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 1.7e-55 220.7 484 35.1
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 1.7e-55 220.7 484 35.1
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 3.0e-55 219.9 482 35.1
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 3.9e-55 219.5 483 34.8
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 1.6e-53 214.2 480 36.0
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 9.0e-52 208.4 478 35.8
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 9.9e-51 204.9 497 34.2
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 8.7e-47 191.8 493 31.8
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.7e-42 177.6 461 33.8
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 3.8e-42 176.4 478 32.8
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 1.1e-38 164.9 495 29.7
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.3e-23 114.8 513 25.1
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 5.7e-22 109.4 486 25.9
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 1.3e-21 108.2 264 29.9
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 2.2e-21 107.5 478 24.7
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 2.2e-21 107.5 494 24.7
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 2.8e-21 107.1 485 25.2
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 2.8e-21 107.1 485 25.2
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 2.8e-21 107.1 260 28.8
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 4.8e-21 106.3 492 24.8
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 6.3e-21 105.9 500 25.2
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 8.2e-21 105.5 304 29.6
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 8.2e-21 105.5 514 24.1
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 2.4e-20 104.0 448 25.2
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 5.3e-20 102.8 256 30.5
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 5.3e-20 102.8 263 30.0
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 6.9e-20 102.4 469 24.9
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 6.9e-20 102.4 475 25.3
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.2e-19 101.7 468 24.8
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 4.5e-19 99.8 486 24.3
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 5.9e-19 99.4 498 24.7
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 1.0e-18 98.6 493 24.1
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.3e-18 98.2 507 24.1
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.9e-18 97.1 162 35.2
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.0e-18 96.3 239 29.3
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 5.0e-18 96.3 254 29.5
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 5.0e-18 96.3 258 30.2
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 6.5e-18 95.9 315 27.6
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 8.5e-18 95.5 155 35.5
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 1.4e-17 94.7 496 24.0
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 1.4e-17 94.7 451 23.3
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.9e-17 94.4 262 27.1
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 2.5e-17 94.0 254 29.1
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.2e-17 93.6 162 34.0
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 3.2e-17 93.6 244 27.0
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 5.5e-17 92.8 509 23.0
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 5.5e-17 92.8 504 24.6
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 7.2e-17 92.4 502 22.9
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 7.2e-17 92.4 262 27.1
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.2e-17 92.4 262 27.1
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 7.2e-17 92.4 454 22.9
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 9.4e-17 92.0 313 28.1
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 9.4e-17 92.0 266 28.6
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 2.1e-16 90.9 160 33.1
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 2.1e-16 90.9 165 32.7
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 2.1e-16 90.9 146 33.6
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 2.7e-16 90.5 261 28.7
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.7e-16 90.5 503 23.3
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 3.6e-16 90.1 264 27.3
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 4.6e-16 89.7 253 26.9
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 4.6e-16 89.7 263 27.4
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 6.1e-16 89.4 312 25.3
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 6.1e-16 89.4 262 26.7
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 7.9e-16 89.0 253 26.5
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 7.9e-16 89.0 264 27.3
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 1.0e-15 88.6 265 28.3
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 1.0e-15 88.6 474 24.3
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 1.0e-15 88.6 250 28.0
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 1.8e-15 87.8 249 29.7
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 2.3e-15 87.4 304 25.7
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 3.0e-15 87.0 254 25.2
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 3.0e-15 87.0 165 30.9
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 3.9e-15 86.7 258 24.8
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 3.9e-15 86.7 300 26.3
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 3.9e-15 86.7 152 32.2
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 5.1e-15 86.3 265 26.8
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 5.1e-15 86.3 480 23.1
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 6.7e-15 85.9 508 22.6
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 1.1e-14 85.1 306 26.1
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.1e-14 85.1 249 28.1
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 1.1e-14 85.1 185 29.2
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 1.5e-14 84.7 517 22.4
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.0e-14 84.3 265 26.0
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 2.5e-14 84.0 270 24.4
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 4.3e-14 83.2 250 26.0
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 4.3e-14 83.2 435 24.8
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 5.7e-14 82.8 160 32.5
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 5.7e-14 82.8 249 24.1
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 5.7e-14 82.8 150 32.0
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 7.4e-14 82.4 311 26.4
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 9.7e-14 82.0 145 32.4
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 1.7e-13 81.3 147 32.0
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 1.7e-13 81.3 147 33.3
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 2.2e-13 80.9 248 25.4
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 6.3e-13 79.3 489 22.5
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 1.4e-12 78.2 248 25.0
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.4e-12 78.2 242 27.7
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 1.8e-12 77.8 270 26.7
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 1.8e-12 77.8 251 26.7
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 3.1e-12 77.0 312 22.4
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 4.1e-12 76.6 175 29.7
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 1.5e-11 74.7 442 22.4
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 1.7e-10 71.2 482 20.7
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 5.0e-10 69.7 520 21.5
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 6.5e-10 69.3 115 40.0
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 7.2e-09 65.9 116 38.8
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 3.6e-08 63.5 111 41.4
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 4.7e-08 63.2 84 46.4
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.0e-07 62.0 98 34.7
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.0e-07 62.0 98 34.7
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.3e-07 60.8 103 44.7
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 3.3e-06 57.0 128 35.9


User provided reference genes

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