Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44803 Brassica carinata HOM05D002974 ORTHO05D002992 5.9e-80 300.8 154 100.0
BolC6t37544H Brassica oleracea HOM05D002974 ORTHO05D002992 5.9e-80 300.8 154 100.0
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 3.0e-76 288.5 154 96.8
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 3.1e-65 251.9 154 87.0
Sp5g05850 Schrenkiella parvula HOM05D002974 ORTHO05D002992 2.8e-61 238.8 155 84.5
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 1.1e-57 226.9 149 82.6
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 1.1e-57 226.9 149 81.9
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 1.1e-57 226.9 149 81.9
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 1.0e-55 220.3 149 79.2
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 1.0e-55 220.3 149 79.2
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 1.7e-55 219.5 152 78.3
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 4.7e-53 211.5 153 77.1
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 6.8e-52 207.6 153 75.2
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 2.6e-51 205.7 152 74.3
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 5.8e-51 204.5 152 75.7
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 4.9e-50 201.4 155 74.2
C04p35760 Brassica napus HOM05D002974 ORTHO05D002992 1.9e-49 199.5 142 76.1
BcaB02g08350 Brassica carinata HOM05D002974 ORTHO05D002992 5.4e-49 198.0 155 74.8
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 9.2e-49 197.2 161 72.0
BolC4t25224H Brassica oleracea HOM05D002974 ORTHO05D002992 6.0e-48 194.5 140 75.0
A04p03510 Brassica napus HOM05D002974 ORTHO05D002992 1.3e-47 193.4 153 71.9
Thhalv10006291m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 1.1e-46 190.3 158 70.3
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 1.2e-43 180.3 128 76.6
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 1.1e-41 173.7 162 63.6
Aa31LG10G11550 Aethionema arabicum HOM05D002974 ORTHO05D002992 3.6e-29 132.1 159 54.7
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.4e-26 121.3 153 53.6
CARHR136270 Cardamine hirsuta HOM05D002974 ORTHO05D002992 1.4e-25 120.2 151 54.3
Thhalv10017346m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 4.2e-25 118.6 152 52.0
BraA05t19205Z Brassica rapa HOM05D002974 ORTHO05D002992 5.4e-25 118.2 152 51.3
Sp4g23480 Schrenkiella parvula HOM05D002974 ORTHO05D002992 3.5e-24 115.5 154 54.5
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.5e-24 115.5 149 52.3
BcaB01g03488 Brassica carinata HOM05D002974 ORTHO05D002992 1.7e-23 113.2 156 51.9
C03p27500 Brassica napus HOM05D002974 ORTHO05D002992 1.5e-22 110.2 154 50.0
BolC3t15126H Brassica oleracea HOM05D002974 ORTHO05D002992 1.5e-22 110.2 154 50.0
BcaC01g05357 Brassica carinata HOM05D002974 ORTHO05D002992 2.5e-22 109.4 154 49.4
AL4G39150 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 5.6e-22 108.2 118 55.1
BcaC02g12758 Brassica carinata HOM05D002974 ORTHO05D002992 5.6e-22 108.2 154 47.4
THA.LOC104803260 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 9.6e-22 107.5 153 50.3
AT2G41180 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 3.6e-21 105.5 120 54.2
BolC4t21893H Brassica oleracea HOM05D002974 ORTHO05D002992 1.1e-20 104.0 154 47.4
Carub.0004s2349 Capsella rubella HOM05D002974 ORTHO05D002992 4.0e-20 102.1 121 51.2
A03p23100 Brassica napus HOM05D002974 ORTHO05D002992 6.9e-20 101.3 117 50.4
BraA03t11531Z Brassica rapa HOM05D002974 ORTHO05D002992 6.9e-20 101.3 117 50.4
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 3.4e-19 99.0 154 48.1
A05p02090 Brassica napus HOM05D002974 ORTHO05D002992 2.2e-18 96.3 140 48.6
BcaC02g09865 Brassica carinata HOM05D002974 ORTHO05D002992 2.1e-16 89.7 59 81.4
BolC4t25225H Brassica oleracea HOM05D002974 ORTHO05D002992 2.1e-16 89.7 59 81.4
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 4.2e-09 65.5 143 37.8
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 1.6e-08 63.5 152 37.5
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 4.6e-08 62.0 136 36.8
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 4.6e-08 62.0 68 57.4
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 6.0e-08 61.6 150 41.3
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 1.0e-07 60.8 140 36.4
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 1.3e-07 60.5 60 58.3
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 1.3e-07 60.5 67 55.2
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.3e-07 60.5 139 37.4
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 1.3e-07 60.5 74 52.7
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 2.3e-07 59.7 83 53.0
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 2.3e-07 59.7 129 35.7
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 3.9e-07 58.9 151 38.4
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 3.9e-07 58.9 64 54.7
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 5.1e-07 58.5 119 36.1
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 5.1e-07 58.5 119 36.1
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 6.7e-07 58.2 114 36.8
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 6.7e-07 58.2 90 41.1
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 8.7e-07 57.8 111 41.4
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 8.7e-07 57.8 47 70.2
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 8.7e-07 57.8 125 35.2
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 8.7e-07 57.8 123 38.2
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 8.7e-07 57.8 148 33.1
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 8.7e-07 57.8 47 63.8
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.1e-06 57.4 63 55.6
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.1e-06 57.4 63 55.6
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.1e-06 57.4 134 35.8
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.1e-06 57.4 118 36.4
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 1.5e-06 57.0 135 34.1
Lalb_Chr21g0315251 Lupinus albus HOM05D002974 ORTHO05D002992 1.5e-06 57.0 90 40.0
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 1.9e-06 56.6 104 38.5
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.9e-06 56.6 61 59.0
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 1.9e-06 56.6 43 65.1
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 1.9e-06 56.6 43 65.1
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.5e-06 56.2 146 39.0
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.5e-06 56.2 132 32.6
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 3.3e-06 55.8 133 36.8
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 4.3e-06 55.5 43 67.4
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.3e-06 55.5 132 32.6
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 4.3e-06 55.5 49 57.1
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 4.3e-06 55.5 48 68.8
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 4.3e-06 55.5 43 67.4
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 5.6e-06 55.1 45 64.4
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 5.6e-06 55.1 47 68.1
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.6e-06 55.1 131 31.3
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 5.6e-06 55.1 58 53.4
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 5.6e-06 55.1 62 53.2
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 7.4e-06 54.7 33 84.8
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 9.6e-06 54.3 66 48.5
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 9.6e-06 54.3 66 48.5
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 9.6e-06 54.3 44 61.4
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 9.6e-06 54.3 44 59.1
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 9.6e-06 54.3 49 55.1


User provided reference genes

Program Settings