Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C06p21980 Brassica napus HOM05D001678 ORTHO05D001698 7.9e-35 149.8 72 100.0
BolC6t37382H Brassica oleracea HOM05D001678 ORTHO05D001698 7.9e-35 149.8 72 100.0
BolC6t37384H Brassica oleracea HOM05D001678 ORTHO05D001698 7.9e-35 149.8 72 100.0
BolC6t37386H Brassica oleracea HOM05D001678 ORTHO05D001698 7.9e-35 149.8 72 100.0
BraA06t25821Z Brassica rapa HOM05D001678 ORTHO05D001698 6.7e-34 146.7 72 97.2
BcaB01g02681 Brassica carinata HOM05D001678 ORTHO05D001698 2.5e-28 128.3 72 83.3
BcaC07g37804 Brassica carinata HOM05D001678 ORTHO05D001698 6.0e-27 123.6 72 76.4
A01p29830 Brassica napus HOM05D001678 ORTHO05D001698 6.0e-27 123.6 72 76.4
C02p32520 Brassica napus HOM05D001678 ORTHO05D001698 6.0e-27 123.6 72 76.4
BolC8t48193H Brassica oleracea HOM05D001678 ORTHO05D001698 6.0e-27 123.6 72 76.4
BraA01t03111Z Brassica rapa HOM05D001678 ORTHO05D001698 6.0e-27 123.6 72 76.4
A02p17800 Brassica napus HOM05D001678 ORTHO05D001698 2.6e-22 108.2 64 75.0
Carub.0007s0094 Capsella rubella HOM05D001678 ORTHO05D001698 2.2e-21 105.1 72 65.3
Carub.0002s1800 Capsella rubella HOM05D001678 ORTHO05D001698 5.0e-21 104.0 72 63.9
AL4G17900 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 1.1e-17 92.8 63 63.5
Carub.0002s1509 Capsella rubella HOM05D001678 ORTHO05D001698 8.2e-16 86.7 72 54.2
Carub.0007s2622 Capsella rubella HOM05D001678 ORTHO05D001698 8.2e-16 86.7 72 54.2
MD03G1206200 Malus domestica HOM05D001678 ORTHO05D001698 2.6e-14 81.6 72 51.4
CARHR004570 Cardamine hirsuta HOM05D001678 ORTHO05D001698 4.5e-14 80.9 72 52.8
BolC5t31169H Brassica oleracea HOM05D001678 ORTHO05D001698 7.7e-14 80.1 72 55.6
BolC6t36822H Brassica oleracea HOM05D001678 ORTHO05D001698 7.7e-14 80.1 72 55.6
AL4G17660 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 5.0e-13 77.4 50 68.0
C09p07340 Brassica napus HOM05D001678 ORTHO05D001698 6.5e-13 77.0 72 54.2
Thhalv10022272m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.1e-12 76.3 71 52.1
MD05G1104000 Malus domestica HOM05D001678 ORTHO05D001698 7.2e-12 73.6 71 50.7
Prupe.7G073100 Prunus persica HOM05D001678 ORTHO05D001698 9.4e-12 73.2 76 42.1
AL1G65810 Arabidopsis lyrata HOM05D000034 ORTHO05D001698 1.2e-11 72.8 72 44.4
BraA10t43304Z Brassica rapa HOM05D001678 ORTHO05D001698 1.2e-11 72.8 70 45.7
A03p43320 Brassica napus HOM05D001678 ORTHO05D001698 1.6e-11 72.4 70 45.7
Sp7g09060 Schrenkiella parvula HOM05D001678 ORTHO05D001698 1.6e-11 72.4 72 41.7
BolC2t09582H Brassica oleracea HOM05D001678 ORTHO05D001698 2.1e-11 72.0 65 49.2
C02p49350 Brassica napus HOM05D001678 ORTHO05D001698 4.6e-11 70.9 72 48.6
BolC2t11022H Brassica oleracea HOM05D001678 ORTHO05D001698 4.6e-11 70.9 72 48.6
BolC2t09580H Brassica oleracea HOM05D001678 ORTHO05D001698 7.9e-11 70.1 65 47.7
BolC3t20376H Brassica oleracea HOM05D001678 ORTHO05D001698 7.9e-11 70.1 65 46.2
AL8G38260 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 1.4e-10 69.3 72 40.3
C02p58150 Brassica napus HOM05D001678 ORTHO05D001698 1.4e-10 69.3 72 45.8
BraA01t03239Z Brassica rapa HOM05D001678 ORTHO05D001698 1.4e-10 69.3 69 49.3
A10p11120 Brassica napus HOM05D001678 ORTHO05D001698 1.8e-10 68.9 70 44.3
BraA10t43205Z Brassica rapa HOM05D001678 ORTHO05D001698 1.8e-10 68.9 70 44.3
BolC2t11883H Brassica oleracea HOM05D001678 ORTHO05D001698 2.3e-10 68.6 72 45.8
FvH4_2g00551 Fragaria vesca HOM05D001678 ORTHO05D001698 5.1e-10 67.4 73 47.9
FAN13G1605 Fragaria x ananassa HOM05D001678 ORTHO05D001698 5.1e-10 67.4 73 47.9
Sp6g02750 Schrenkiella parvula HOM05D001678 ORTHO05D001698 5.1e-10 67.4 72 43.1
AT5G27260 Arabidopsis thaliana HOM05D001678 ORTHO05D001698 6.7e-10 67.0 73 42.5
BolC7t41455H Brassica oleracea HOM05D001678 ORTHO05D001698 8.8e-10 66.6 71 39.4
BolC9t56511H Brassica oleracea HOM05D001678 ORTHO05D001698 8.8e-10 66.6 65 41.5
Carub.0006s3595 Capsella rubella HOM05D001678 ORTHO05D001698 8.8e-10 66.6 73 42.5
Carub.0008s1510 Capsella rubella HOM05D001678 ORTHO05D001698 8.8e-10 66.6 73 42.5
C02p14410 Brassica napus HOM05D001678 ORTHO05D001698 1.1e-09 66.2 71 45.1
BraA04t16704Z Brassica rapa HOM05D001678 ORTHO05D001698 1.1e-09 66.2 65 41.5
A09p37990 Brassica napus HOM05D001678 ORTHO05D001698 2.0e-09 65.5 72 41.7
Thhalv10029423m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 2.0e-09 65.5 73 43.8
BolC3t21566H Brassica oleracea HOM05D001678 ORTHO05D001698 2.5e-09 65.1 65 41.5
AL2G16050 Arabidopsis lyrata HOM05D001678 ORTHO05D001698 3.3e-09 64.7 71 42.3
BolC4t22829H Brassica oleracea HOM05D001678 ORTHO05D001698 3.3e-09 64.7 65 41.5
BolC9t53596H Brassica oleracea HOM05D001678 ORTHO05D001698 3.3e-09 64.7 70 40.0
BraA05t21006Z Brassica rapa HOM05D001678 ORTHO05D001698 3.3e-09 64.7 65 40.0
Thhalv10029159m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 4.3e-09 64.3 57 52.6
FAN26G0826 Fragaria x ananassa HOM05D001678 ORTHO05D001698 4.3e-09 64.3 73 45.2
Prupe.4G156100 Prunus persica HOM05D001678 ORTHO05D001698 4.3e-09 64.3 78 34.6
C05p18830 Brassica napus HOM05D001678 ORTHO05D001698 5.7e-09 63.9 72 41.7
C07p02260 Brassica napus HOM05D001678 ORTHO05D001698 5.7e-09 63.9 72 41.7
PSO478G1052 Papaver somniferum HOM05D001678 ORTHO05D001698 5.7e-09 63.9 69 44.9
SGA_v2.0_scaffold27G11443 Striga asiatica HOM05D001678 ORTHO05D001698 5.7e-09 63.9 73 43.8
SGA_v2.0_scaffold612G53189 Striga asiatica HOM05D001678 ORTHO05D001698 5.7e-09 63.9 73 43.8
SGA_v2.0_scaffold68G22889 Striga asiatica HOM05D001678 ORTHO05D001698 5.7e-09 63.9 73 43.8
Prupe.6G164800 Prunus persica HOM05D001678 ORTHO05D001698 9.7e-09 63.2 74 37.8
C05p38790 Brassica napus HOM05D001678 ORTHO05D001698 1.3e-08 62.8 69 42.0
BolC5t32619H Brassica oleracea HOM05D001678 ORTHO05D001698 1.3e-08 62.8 69 42.0
BolC7t40636H Brassica oleracea HOM05D001678 ORTHO05D001698 1.3e-08 62.8 72 41.7
DCAR_028638 Daucus carota HOM05D001678 ORTHO05D001698 1.3e-08 62.8 70 42.9
Thhalv10005278m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.3e-08 62.8 62 46.8
Atru.chr7.11 Acer truncatum HOM05D000034 ORTHO05D000037 1.7e-08 62.4 76 38.2
Thhalv10023821m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 1.7e-08 62.4 73 42.5
Oeu041480.1 Olea europaea HOM05D001678 ORTHO05D001698 1.7e-08 62.4 70 38.6
Lj3C974T6 Lonicera japonica HOM05D000034 ORTHO05D001698 2.2e-08 62.0 78 43.6
Lj4C317T2 Lonicera japonica HOM05D000034 ORTHO05D001698 2.2e-08 62.0 78 43.6
C07p02270 Brassica napus HOM05D001678 ORTHO05D001698 2.8e-08 61.6 72 40.3
FAN09G4289 Fragaria x ananassa HOM05D001678 ORTHO05D001698 2.8e-08 61.6 72 36.1
SGA_v2.0_scaffold3280G54305 Striga asiatica HOM05D001678 ORTHO05D001698 2.8e-08 61.6 73 39.7
A01p29330 Brassica napus HOM05D001678 ORTHO05D001698 4.8e-08 60.8 65 40.0
A01p29340 Brassica napus HOM05D001678 ORTHO05D001698 4.8e-08 60.8 65 41.5
BraA01t03065Z Brassica rapa HOM05D001678 ORTHO05D001698 4.8e-08 60.8 65 40.0
Prupe.7G010100 Prunus persica HOM05D001678 ORTHO05D001698 4.8e-08 60.8 78 43.6
SGA_v2.0_scaffold177G39408 Striga asiatica HOM05D001678 ORTHO05D001698 4.8e-08 60.8 73 42.5
BolC7t40637H Brassica oleracea HOM05D001678 ORTHO05D001698 6.3e-08 60.5 72 40.3
Oeu027419.1 Olea europaea HOM05D000034 ORTHO05D000037 6.3e-08 60.5 70 38.6
Atru.chr11.726 Acer truncatum HOM05D001678 ORTHO05D001698 8.2e-08 60.1 78 38.5
Thhalv10015362m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 8.2e-08 60.1 71 43.7
Medtr1g106608 Medicago truncatula HOM05D001678 ORTHO05D001698 8.2e-08 60.1 75 45.3
C01p37120 Brassica napus HOM05D001678 ORTHO05D001698 1.1e-07 59.7 65 40.0
BolC1t03676H Brassica oleracea HOM05D001678 ORTHO05D001698 1.1e-07 59.7 65 40.0
BraA01t03066Z Brassica rapa HOM05D001678 ORTHO05D001698 1.1e-07 59.7 65 40.0
BraA05t20441Z Brassica rapa HOM05D001678 ORTHO05D001698 1.1e-07 59.7 70 38.6
Carub.0006s2633 Capsella rubella HOM05D001678 ORTHO05D001698 1.1e-07 59.7 50 56.0
Oeu015820.2 Olea europaea HOM05D001678 ORTHO05D001698 1.1e-07 59.7 70 38.6
RcHm_v2.0_Chr5g0052631 Rosa chinensis HOM05D001678 ORTHO05D001698 1.1e-07 59.7 72 36.1
Medtr1g106600 Medicago truncatula HOM05D001678 ORTHO05D001698 1.4e-07 59.3 78 43.6
Medtr6g018520 Medicago truncatula HOM05D001678 ORTHO05D001698 1.4e-07 59.3 78 43.6
Medtr6g025650 Medicago truncatula HOM05D001678 ORTHO05D001698 1.4e-07 59.3 78 43.6
Prupe.1G177900 Prunus persica HOM05D001678 ORTHO05D001698 1.8e-07 58.9 78 42.3
CARHR052440 Cardamine hirsuta HOM05D001678 ORTHO05D001698 2.4e-07 58.5 72 38.9
Glyma.10G293700 Glycine max HOM05D001678 ORTHO05D001698 2.4e-07 58.5 77 40.3
Glyma.18G292500 Glycine max HOM05D001678 ORTHO05D001698 3.1e-07 58.2 77 40.3
RcHm_v2.0_Chr3g0476481 Rosa chinensis HOM05D001678 ORTHO05D001698 3.1e-07 58.2 75 48.0
SGA_v2.0_scaffold27G11713 Striga asiatica HOM05D001678 ORTHO05D001698 3.1e-07 58.2 73 41.1
C09p41880 Brassica napus HOM05D001678 ORTHO05D001698 4.1e-07 57.8 71 39.4
BolC9t57074H Brassica oleracea HOM05D001678 ORTHO05D001698 4.1e-07 57.8 71 39.4
FAN08G2072 Fragaria x ananassa HOM05D001678 ORTHO05D001698 4.1e-07 57.8 72 34.7
AT2G29880 Arabidopsis thaliana HOM05D001678 ORTHO05D001698 5.3e-07 57.4 71 39.4
Glyma.09G071200 Glycine max HOM05D001678 ORTHO05D001698 5.3e-07 57.4 77 39.0
Medtr7g111990 Medicago truncatula HOM05D001678 ORTHO05D001698 5.3e-07 57.4 78 42.3
FAN10G0526 Fragaria x ananassa HOM05D001678 ORTHO05D001698 6.9e-07 57.0 73 35.6
Glyma.12G113000 Glycine max HOM05D001678 ORTHO05D001698 6.9e-07 57.0 77 39.0
Oeu059447.1 Olea europaea HOM05D001678 ORTHO05D001698 6.9e-07 57.0 70 37.1
Sp2g04200 Schrenkiella parvula HOM05D001678 ORTHO05D001698 6.9e-07 57.0 65 38.5
Carub.0008s0702 Capsella rubella HOM05D001678 ORTHO05D001698 9.1e-07 56.6 69 39.1
Glyma.01G110000 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
Glyma.01G111800 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
Glyma.06G095100 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
Glyma.08G218300 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
Glyma.08G239700 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
Glyma.10G128600 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
Glyma.10G131100 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
Glyma.10G200900 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
Glyma.10G211500 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
Glyma.11G167500 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
Glyma.13G184400 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
Glyma.14G095600 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
Glyma.14G219200 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
Glyma.15G150600 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
Glyma.15G233800 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
Glyma.17G148300 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
Glyma.18G175000 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
Glyma.19G032300 Glycine max HOM05D001678 ORTHO05D001698 9.1e-07 56.6 77 39.0
A06p22390 Brassica napus HOM05D001678 ORTHO05D001698 1.2e-06 56.2 65 36.9
Glyma.04G175200 Glycine max HOM05D001678 ORTHO05D001698 1.2e-06 56.2 77 39.0
A09p34470 Brassica napus HOM05D001678 ORTHO05D020164 1.5e-06 55.8 59 40.7
SGA_v2.0_scaffold1090G53835 Striga asiatica HOM05D001678 ORTHO05D001698 1.5e-06 55.8 53 45.3
Atru.chr12.2214 Acer truncatum HOM05D001678 ORTHO05D001698 2.0e-06 55.5 65 38.5
Glyma.14G191800 Glycine max HOM05D001678 ORTHO05D001698 2.0e-06 55.5 74 39.2
Glyma.09G168100 Glycine max HOM05D001678 ORTHO05D001698 2.6e-06 55.1 77 37.7
C05p34590 Brassica napus HOM05D001678 ORTHO05D001698 4.5e-06 54.3 48 47.9
BolC5t32191H Brassica oleracea HOM05D001678 ORTHO05D001698 4.5e-06 54.3 48 47.9
Thhalv10029209m.g Eutrema salsugineum HOM05D001678 ORTHO05D001698 4.5e-06 54.3 73 37.0
FAN23G0320 Fragaria x ananassa HOM05D001678 ORTHO05D001698 4.5e-06 54.3 68 36.8
Prupe.7G052500 Prunus persica HOM05D001678 ORTHO05D001698 5.9e-06 53.9 78 41.0
Atru.chr3.1756 Acer truncatum HOM05D001678 ORTHO05D001698 7.7e-06 53.5 65 38.5
BolC4t24027H Brassica oleracea HOM05D001678 ORTHO05D001698 7.7e-06 53.5 45 53.3
Glyma.01G126100 Glycine max HOM05D001678 ORTHO05D001698 7.7e-06 53.5 77 37.7
Glyma.05G193100 Glycine max HOM05D001678 ORTHO05D001698 7.7e-06 53.5 77 37.7
Prupe.1G170700 Prunus persica HOM05D001678 ORTHO05D001698 7.7e-06 53.5 70 34.3
Prupe.4G168300 Prunus persica HOM05D001678 ORTHO05D001698 7.7e-06 53.5 70 34.3
SGA_v2.0_scaffold230G43377 Striga asiatica HOM05D001678 ORTHO05D001698 7.7e-06 53.5 73 38.4


User provided reference genes

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