Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37203H Brassica oleracea HOM05D002129 ORTHO05D002188 1.8e-183 647.9 1419 100.0
C06p20190 Brassica napus HOM05D001971 ORTHO05D002188 4.7e-155 553.5 1595 87.6
BcaC08g44556 Brassica carinata HOM05D002129 ORTHO05D002188 9.1e-143 512.7 505 98.8
A07p20930 Brassica napus HOM05D002129 ORTHO05D002188 2.3e-130 471.5 505 94.1
BraA04t17139Z Brassica rapa HOM05D002129 ORTHO05D002188 1.4e-114 419.1 1429 76.0
Thhalv10027620m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 5.1e-101 374.0 479 71.8
Carub.0007s3359 Capsella rubella HOM05D002129 ORTHO05D002188 8.4e-88 330.1 505 78.4
BcaB06g27672 Brassica carinata HOM05D002129 ORTHO05D002188 1.6e-86 325.9 568 69.9
AL7G47470 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 3.0e-85 321.6 1432 77.0
AT5G41790 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 1.6e-83 315.8 494 74.7
C04p49150 Brassica napus HOM05D002129 ORTHO05D002188 4.8e-83 314.3 1488 80.7
Aa31LG9G340 Aethionema arabicum HOM05D002129 ORTHO05D002188 4.4e-81 307.8 508 71.1
A04p14960 Brassica napus HOM05D002129 ORTHO05D002188 5.8e-81 307.4 1490 76.5
BcaC02g08917 Brassica carinata HOM05D002129 ORTHO05D002188 4.6e-78 297.7 1488 78.3
CARHR212780 Cardamine hirsuta HOM05D002129 ORTHO05D002188 7.9e-70 270.4 483 67.3
C08p22900 Brassica napus HOM05D002129 ORTHO05D016708 1.6e-67 262.7 235 85.1
BolC8t49926H Brassica oleracea HOM05D002129 ORTHO05D016708 1.6e-67 262.7 235 85.1
BcaC07g39281 Brassica carinata HOM05D002129 ORTHO05D016708 6.9e-66 257.3 235 70.2
BolC4t26499H Brassica oleracea HOM05D002129 ORTHO05D002188 9.0e-66 256.9 252 69.4
Sp7g00300 Schrenkiella parvula HOM05D002129 ORTHO05D002188 9.0e-66 256.9 245 72.7
Carub.0007s3367 Capsella rubella HOM05D002129 ORTHO05D021914 5.3e-58 231.1 279 60.6
C07p01920 Brassica napus HOM05D002129 ORTHO05D002188 6.9e-58 230.7 215 66.0
A07p20920 Brassica napus HOM05D002129 ORTHO05D002188 2.9e-48 198.7 159 99.4
BcaC06g36642 Brassica carinata HOM05D002129 ORTHO05D002188 3.6e-46 191.8 190 64.2
BolC7t40600H Brassica oleracea HOM05D002129 ORTHO05D002188 3.6e-46 191.8 190 64.2
AL2G10610 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 1.7e-43 183.0 311 51.1
Carub.0002s0048 Capsella rubella HOM05D002129 ORTHO05D002188 1.0e-40 173.7 166 57.8
AT1G64330 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 1.3e-40 173.3 166 59.6
CARHR046630 Cardamine hirsuta HOM05D002129 ORTHO05D002188 2.6e-36 159.1 306 48.0
Sp2g00430 Schrenkiella parvula HOM05D002129 ORTHO05D002188 3.7e-35 155.2 163 55.8
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 1.2e-33 150.2 156 51.9
A09p14790 Brassica napus HOM05D002129 ORTHO05D002188 1.2e-33 150.2 310 48.1
C09p17910 Brassica napus HOM05D002129 ORTHO05D002188 4.5e-33 148.3 310 46.5
Thhalv10023387m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 7.7e-33 147.5 221 52.0
BcaB07g31455 Brassica carinata HOM05D002129 ORTHO05D002188 1.3e-32 146.7 163 52.8
BcaC04g22559 Brassica carinata HOM05D002129 ORTHO05D002188 1.3e-32 146.7 310 46.1
THA.LOC104809341 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 3.8e-32 145.2 400 37.0
BolC9t54688H Brassica oleracea HOM05D002129 ORTHO05D002188 6.7e-29 134.4 275 43.6
arahy.Tifrunner.gnm1.ann1.DN0YA4 Arachis hypogaea HOM05D002129 ORTHO05D002188 2.0e-28 132.9 264 39.8
arahy.Tifrunner.gnm1.ann1.Q3GPI2 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.4e-26 126.7 264 38.6
BcaC02g11041 Brassica carinata HOM05D002129 ORTHO05D016708 3.1e-26 125.6 371 33.2
Duzib205G0555 Durio zibethinus HOM05D002129 ORTHO05D002188 5.3e-26 124.8 253 39.1
Duzib068G1418 Durio zibethinus HOM05D002129 ORTHO05D002188 1.3e-24 120.2 265 34.7
Eucgr.E00844 Eucalyptus grandis HOM05D002129 ORTHO05D002188 2.2e-24 119.4 266 34.6
Potri.001G094200 Populus trichocarpa HOM05D002129 ORTHO05D002188 1.5e-23 116.7 237 40.1
Gohir.A02G102200 Gossypium hirsutum HOM05D002129 ORTHO05D002188 3.2e-23 115.5 222 39.2
Thecc.03G293200 Theobroma cacao HOM05D002129 ORTHO05D002188 1.6e-22 113.2 228 41.7
Gorai.003G081700 Gossypium raimondii HOM05D002129 ORTHO05D002188 2.1e-22 112.8 225 39.1
COL.COLO4_21718 Corchorus olitorius HOM05D002129 ORTHO05D002188 3.6e-22 112.1 232 40.1
Gohir.D03G081900 Gossypium hirsutum HOM05D002129 ORTHO05D002188 4.7e-22 111.7 217 40.1
Gorai.006G207900 Gossypium raimondii HOM05D002129 ORTHO05D002188 5.2e-21 108.2 264 40.2
Manes.01G045900 Manihot esculenta HOM05D002129 ORTHO05D002188 6.8e-21 107.8 265 37.0
Ciclev10018618m.g Citrus clementina HOM05D002129 ORTHO05D002188 2.6e-20 105.9 268 36.2
TAR374G0929 Trochodendron aralioides HOM05D002129 ORTHO05D002188 2.6e-20 105.9 266 33.1
Ca_17495_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 4.4e-20 105.1 263 33.8
TWI60G1278 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 4.4e-20 105.1 331 33.5
BcaB02g10228 Brassica carinata HOM05D002129 ORTHO05D016708 9.8e-20 104.0 93 73.1
Prupe.5G115300 Prunus persica HOM05D002129 ORTHO05D002188 9.8e-20 104.0 333 34.8
Actinidia27335 Actinidia chinensis HOM05D002129 ORTHO05D002188 2.8e-19 102.4 265 34.3
Gohir.D09G185400 Gossypium hirsutum HOM05D002129 ORTHO05D002188 2.8e-19 102.4 222 39.2
Potri.003G137400 Populus trichocarpa HOM05D002129 ORTHO05D002188 3.7e-19 102.1 223 37.7
Sabra03G0098900 Salix brachista HOM05D002129 ORTHO05D002188 2.4e-18 99.4 243 30.9
Manes.10G064266 Manihot esculenta HOM05D002129 ORTHO05D002188 3.1e-18 99.0 265 34.0
MD06G1102300 Malus domestica HOM05D002129 ORTHO05D002188 4.1e-18 98.6 268 28.7
Cpa.g.sc79.65 Carica papaya HOM05D002129 ORTHO05D002188 9.1e-18 97.4 138 45.7
Gohir.A09G190800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 9.1e-18 97.4 219 39.3
MD14G1121500 Malus domestica HOM05D002129 ORTHO05D002188 9.1e-18 97.4 202 34.7
CiPaw.12G085000 Carya illinoinensis HOM05D002129 ORTHO05D002188 1.6e-17 96.7 336 28.0
Rhsim07G0084000 Rhododendron simsii HOM05D002129 ORTHO05D002188 1.6e-17 96.7 319 27.3
Solyc08g082010.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 4.5e-17 95.1 248 36.3
Medtr8g099275 Medicago truncatula HOM05D002129 ORTHO05D002188 1.3e-16 93.6 265 32.8
QL02p031434 Quercus lobata HOM05D002129 ORTHO05D002188 1.7e-16 93.2 205 36.6
CiPaw.11G123900 Carya illinoinensis HOM05D002129 ORTHO05D002188 5.0e-16 91.7 264 30.3
FAN18G3989 Fragaria x ananassa HOM05D002129 ORTHO05D002188 5.0e-16 91.7 200 38.0
Glyma.05G215100 Glycine max HOM05D002129 ORTHO05D002188 5.0e-16 91.7 265 34.3
Phvul.002G296300 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 5.0e-16 91.7 227 37.9
CANSAT21G2383 Cannabis sativa HOM05D002129 ORTHO05D002188 6.5e-16 91.3 306 39.2
Nitab4.5_0000223g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 1.1e-15 90.5 221 37.6
GSVIVG01019499001 Vitis vinifera HOM05D002129 ORTHO05D002188 1.1e-15 90.5 253 32.8
FvH4_5g04072 Fragaria vesca HOM05D002129 ORTHO05D002188 1.9e-15 89.7 200 37.5
Sopen08g030310 Solanum pennellii HOM05D002129 ORTHO05D002188 3.2e-15 89.0 220 38.6
Cc08_g15780 Coffea canephora HOM05D002129 ORTHO05D002188 5.5e-15 88.2 210 38.1
RcHm_v2.0_Chr7g0195431 Rosa chinensis HOM05D002129 ORTHO05D002188 5.5e-15 88.2 204 37.7
VMungo0251G1428 Vigna mungo HOM05D002129 ORTHO05D002188 5.5e-15 88.2 265 30.9
FAN08G2643 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.2e-14 87.0 206 38.3
Duzib084G0891 Durio zibethinus HOM05D002129 ORTHO05D002188 1.6e-14 86.7 192 35.4
CSS0045654 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 2.1e-14 86.3 189 34.9
FAN13G0971 Fragaria x ananassa HOM05D002129 ORTHO05D002188 2.1e-14 86.3 206 37.9
Dinv37550 Davidia involucrata HOM05D002129 ORTHO05D002188 3.6e-14 85.5 327 38.5
Gohir.D04G079828 Gossypium hirsutum HOM05D002129 ORTHO05D002188 4.7e-14 85.1 164 36.0
Sabra01G0070100 Salix brachista HOM05D002129 ORTHO05D002188 6.1e-14 84.7 122 42.6
Haze_08667 Corylus avellana HOM05D002129 ORTHO05D002188 1.8e-13 83.2 315 26.3
Lalb_Chr16g0390551 Lupinus albus HOM05D002129 ORTHO05D002188 1.8e-13 83.2 236 30.5
Atru.chr9.2042 Acer truncatum HOM05D002129 ORTHO05D002188 4.0e-13 82.0 265 28.7
MELO3C016308.2 Cucumis melo HOM05D002129 ORTHO05D002188 4.0e-13 82.0 325 31.7
Manes.02G012600 Manihot esculenta HOM05D002129 ORTHO05D002188 5.2e-13 81.6 186 34.4
DCAR_005027 Daucus carota HOM05D002129 ORTHO05D002188 6.8e-13 81.3 249 29.7
Glyma.08G021400 Glycine max HOM05D002129 ORTHO05D002188 6.8e-13 81.3 331 32.3
Nitab4.5_0004161g0030 Nicotiana tabacum HOM05D002129 ORTHO05D002188 6.8e-13 81.3 204 37.7
Lj4g0008940 Lotus japonicus HOM05D002129 ORTHO05D002188 4.4e-12 78.6 204 35.3
SGA_v2.0_scaffold111G31429 Striga asiatica HOM05D002129 ORTHO05D002188 4.4e-12 78.6 226 35.4
Cfa012842 Carpinus fangiana HOM05D002129 ORTHO05D002188 1.3e-11 77.0 316 25.6
FAN18G4528 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.3e-11 77.0 331 36.6
vmacro13912 Vaccinium macrocarpon HOM05D002129 ORTHO05D002188 1.3e-11 77.0 326 24.2
CAN.G532.94 Capsicum annuum HOM05D002129 ORTHO05D002188 2.8e-11 75.9 180 40.0
FAN04G1700 Fragaria x ananassa HOM05D002129 ORTHO05D002188 3.7e-11 75.5 283 30.7
FAN04G3154 Fragaria x ananassa HOM05D002129 ORTHO05D002188 3.7e-11 75.5 283 30.7
PGSC0003DMG400012303 Solanum tuberosum HOM05D002129 ORTHO05D002188 6.3e-11 74.7 174 40.8
Actinidia04211 Actinidia chinensis HOM05D002129 ORTHO05D002188 8.3e-11 74.3 176 31.2
Duzib084G0477 Durio zibethinus HOM05D002129 ORTHO05D002188 8.3e-11 74.3 201 33.3
Rhsim02G0241100 Rhododendron simsii HOM05D002129 ORTHO05D002188 8.3e-11 74.3 174 31.0
A07p07550 Brassica napus HOM05D002129 ORTHO05D002188 1.1e-10 73.9 46 87.0
Gohir.A05G349350 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.4e-10 73.6 160 33.8
Medtr8g099280 Medicago truncatula HOM05D002129 ORTHO05D002188 1.4e-10 73.6 310 32.6
Actinidia01396 Actinidia chinensis HOM05D002129 ORTHO05D002188 1.8e-10 73.2 135 35.6
Dinv38857 Davidia involucrata HOM05D002129 ORTHO05D002188 1.8e-10 73.2 174 32.8
Oeu042387.1 Olea europaea HOM05D002129 ORTHO05D002188 2.4e-10 72.8 189 38.6
AUR62019808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 5.4e-10 71.6 179 30.7
TPR.G3412 Trifolium pratense HOM05D002129 ORTHO05D002188 5.4e-10 71.6 215 34.4
TAR374G1003 Trochodendron aralioides HOM05D002129 ORTHO05D002188 5.4e-10 71.6 185 30.3
vmacro11445 Vaccinium macrocarpon HOM05D001971 ORTHO05D003057 7.0e-10 71.2 176 30.7
CSS0047098 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.2e-09 70.5 174 30.5
ClCG07G014890 Citrullus lanatus HOM05D002129 ORTHO05D002188 1.2e-09 70.5 199 29.1
Lalb_Chr05g0224241 Lupinus albus HOM05D002129 ORTHO05D002188 1.2e-09 70.5 332 33.1
CSS0006894 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.6e-09 70.1 174 30.5
CSS0018198 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.6e-09 70.1 174 30.5
CSS0027740 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.6e-09 70.1 174 30.5
Dinv37551 Davidia involucrata HOM05D002129 ORTHO05D002188 1.6e-09 70.1 169 31.4
Peaxi162Scf00074g01134 Petunia axillaris HOM05D002129 ORTHO05D002188 1.6e-09 70.1 215 30.2
Sed0022097 Sechium edule HOM05D002129 ORTHO05D002188 1.6e-09 70.1 320 25.3
AUR62010809 Chenopodium quinoa HOM05D002129 ORTHO05D002188 3.5e-09 68.9 178 29.2
CsaV3_4G006420 Cucumis sativus L. HOM05D002129 ORTHO05D002188 3.5e-09 68.9 327 29.4
MSTRG.25657 Avicennia marina HOM05D002129 ORTHO05D002188 1.0e-08 67.4 280 32.5
Gohir.A09G007350 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.0e-08 67.4 38 76.3
Oeu009945.1 Olea europaea HOM05D002129 ORTHO05D002188 1.0e-08 67.4 259 31.7
Psat7g027680 Pisum sativum HOM05D002129 ORTHO05D002188 1.7e-08 66.6 326 31.0
SalBow8G2059 Salvia bowleyana HOM05D002129 ORTHO05D002188 1.7e-08 66.6 200 40.5
unitig_62.g23616 Utricularia gibba HOM05D002129 ORTHO05D002188 1.7e-08 66.6 191 31.4
SGA_v2.0_scaffold144G35850 Striga asiatica HOM05D002129 ORTHO05D002188 2.9e-08 65.9 255 32.2
SGA_v2.0_scaffold173G39089 Striga asiatica HOM05D002129 ORTHO05D002188 3.8e-08 65.5 164 32.9
TWI15G0725 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 5.0e-08 65.1 185 28.1
Lalb_Chr09g0332631 Lupinus albus HOM05D002129 ORTHO05D002188 6.6e-08 64.7 195 29.7
Lsat_1_v5_gn_6_12040 Lactuca sativa HOM05D002129 ORTHO05D002188 8.6e-08 64.3 221 35.3
Ca_17494_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 1.1e-07 63.9 171 31.6
SalBow1G3214 Salvia bowleyana HOM05D002129 ORTHO05D002188 1.1e-07 63.9 193 28.5
unitig_52.g17439 Utricularia gibba HOM05D002129 ORTHO05D002188 1.1e-07 63.9 317 23.7
MSTRG.1816 Avicennia marina HOM05D002129 ORTHO05D002188 2.5e-07 62.8 260 23.5
Migut.A00678 Erythranthe guttata HOM05D002129 ORTHO05D002188 2.5e-07 62.8 187 31.6
Cpa.g.sc122.43 Carica papaya HOM05D002129 ORTHO05D002188 3.3e-07 62.4 181 30.9
Migut.E01236 Erythranthe guttata HOM05D002129 ORTHO05D002188 3.3e-07 62.4 177 35.6
ECA246G1519 Erigeron canadensis HOM05D002129 ORTHO05D002188 4.3e-07 62.0 145 34.5
Migut.E01235 Erythranthe guttata HOM05D002129 ORTHO05D002188 4.3e-07 62.0 169 30.2
Manes.01G046000 Manihot esculenta HOM05D002129 ORTHO05D002188 4.3e-07 62.0 171 32.2
MD14G1121400 Malus domestica HOM05D002129 ORTHO05D002188 5.6e-07 61.6 182 30.2
PGR042G1587 Punica granatum HOM05D002129 ORTHO05D002188 5.6e-07 61.6 197 29.4
Nitab4.5_0006656g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 7.3e-07 61.2 155 31.0
ECA240G2507 Erigeron canadensis HOM05D002129 ORTHO05D002188 9.5e-07 60.8 169 29.6
Lsat_1_v5_gn_6_85821 Lactuca sativa HOM05D002129 ORTHO05D002188 9.5e-07 60.8 194 35.1
Nitab4.5_0002944g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 1.2e-06 60.5 155 31.0
Ah.12g052310 Amaranthus hybridus HOM05D002129 ORTHO05D002188 1.6e-06 60.1 193 27.5
Gorai.008G186100 Gossypium raimondii HOM05D002129 ORTHO05D002188 2.1e-06 59.7 169 30.8
Lj8P210T83 Lonicera japonica HOM05D002129 ORTHO05D002188 2.1e-06 59.7 162 30.9
Ah.07g197190 Amaranthus hybridus HOM05D002129 ORTHO05D002188 2.8e-06 59.3 307 29.6
MSTRG.11936 Avicennia marina HOM05D002129 ORTHO05D002188 2.8e-06 59.3 164 32.3
BraA03t09871Z Brassica rapa HOM05D002129 ORTHO05D016708 2.8e-06 59.3 39 84.6
unitig_748.g7418 Utricularia gibba HOM05D002129 ORTHO05D002188 2.8e-06 59.3 166 31.3
CAN.G26.3 Capsicum annuum HOM05D002129 ORTHO05D002188 3.6e-06 58.9 136 31.6
ECA233G6022 Erigeron canadensis HOM05D002129 ORTHO05D002188 3.6e-06 58.9 228 33.3
BcaC06g36641 Brassica carinata HOM05D039401 ORTHO05D032017 4.7e-06 58.5 32 87.5
C07p01930 Brassica napus HOM05D039401 ORTHO05D032017 4.7e-06 58.5 32 87.5
BolC7t40601H Brassica oleracea HOM05D039401 ORTHO05D032017 4.7e-06 58.5 32 87.5
Solyc12g056060.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 4.7e-06 58.5 136 32.4
Sopen08g004110 Solanum pennellii HOM05D002129 ORTHO05D002188 4.7e-06 58.5 164 30.5
Cc08_g15770 Coffea canephora HOM05D002129 ORTHO05D002188 6.1e-06 58.2 172 29.1
Medtr8g099290 Medicago truncatula HOM05D002129 ORTHO05D002188 6.1e-06 58.2 324 22.8
Sc07g0009960 Simmondsia chinensis HOM05D002129 ORTHO05D002188 6.1e-06 58.2 174 27.0
Sopen12g028580 Solanum pennellii HOM05D002129 ORTHO05D002188 6.1e-06 58.2 164 31.1
PGSC0003DMG400005787 Solanum tuberosum HOM05D002129 ORTHO05D002188 6.1e-06 58.2 135 33.3
Migut.A00679 Erythranthe guttata HOM05D002129 ORTHO05D002188 8.0e-06 57.8 136 33.8
Peaxi162Scf00117g00131 Petunia axillaris HOM05D002129 ORTHO05D002188 8.0e-06 57.8 137 31.4


User provided reference genes

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