Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37202H Brassica oleracea HOM05D002129 ORTHO05D002188 1.8e-82 309.3 163 100.0
BolC6t37201H Brassica oleracea HOM05D002129 ORTHO05D002188 2.8e-64 248.8 149 89.9
BcaC08g44555 Brassica carinata HOM05D002129 ORTHO05D002188 5.3e-63 244.6 149 88.6
BraA07t29778Z Brassica rapa HOM05D002129 ORTHO05D002188 9.4e-60 233.8 149 84.6
A07p20910 Brassica napus HOM05D002129 ORTHO05D002188 4.7e-59 231.5 149 83.9
BcaB02g07879 Brassica carinata HOM05D002129 ORTHO05D002188 6.7e-58 227.6 149 81.9
AT5G41780 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 6.3e-48 194.5 154 71.4
Thhalv10028203m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 1.2e-41 173.7 134 68.7
AL7G47480 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 3.2e-36 155.6 137 65.0
C06p20190 Brassica napus HOM05D001971 ORTHO05D002188 4.8e-32 141.7 93 81.7
THA.LOC104823609 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 2.4e-31 139.4 171 52.6
Carub.0007s3360 Capsella rubella HOM05D002129 ORTHO05D002188 5.9e-30 134.8 155 55.5
Sp2g00440 Schrenkiella parvula HOM05D002129 ORTHO05D002188 3.0e-26 122.5 166 50.0
Cpa.g.sc122.43 Carica papaya HOM05D002129 ORTHO05D002188 6.8e-26 121.3 151 49.7
AL2G10620 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 1.2e-25 120.6 183 45.9
Carub.0002s0049 Capsella rubella HOM05D002129 ORTHO05D002188 3.4e-25 119.0 144 49.3
CARHR212790 Cardamine hirsuta HOM05D002129 ORTHO05D002188 7.5e-25 117.9 153 52.3
AT1G64320 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 6.3e-24 114.8 183 44.3
CARHR046640 Cardamine hirsuta HOM05D002129 ORTHO05D002188 3.5e-22 109.0 185 41.6
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 8.6e-21 104.4 167 46.7
THA.LOC104809342 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 1.1e-20 104.0 155 46.5
Thhalv10024082m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 1.0e-18 97.4 183 41.0
A09p14800 Brassica napus HOM05D002129 ORTHO05D002188 2.0e-17 93.2 210 38.1
C09p17920 Brassica napus HOM05D002129 ORTHO05D002188 1.7e-16 90.1 106 51.9
BolC9t54689H Brassica oleracea HOM05D002129 ORTHO05D002188 1.7e-16 90.1 106 51.9
BcaB07g31454 Brassica carinata HOM05D002129 ORTHO05D002188 3.7e-16 89.0 106 49.1
BraA09t37126Z Brassica rapa HOM05D002129 ORTHO05D002188 3.7e-16 89.0 106 50.9
BcaC04g22558 Brassica carinata HOM05D002129 ORTHO05D002188 7.0e-15 84.7 175 39.4
Thecc.03G293100 Theobroma cacao HOM05D002129 ORTHO05D002188 4.6e-14 82.0 143 33.6
TWI15G0725 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 4.6e-14 82.0 120 45.8
Prupe.5G115200 Prunus persica HOM05D002129 ORTHO05D002188 1.0e-13 80.9 111 41.4
MD14G1121400 Malus domestica HOM05D002129 ORTHO05D002188 1.7e-13 80.1 123 38.2
Atru.chr9.2043 Acer truncatum HOM05D002129 ORTHO05D002188 6.6e-13 78.2 115 38.3
Ciclev10024006m.g Citrus clementina HOM05D002129 ORTHO05D002188 1.9e-12 76.6 95 43.2
MD06G1102200 Malus domestica HOM05D002129 ORTHO05D002188 3.3e-12 75.9 119 36.1
RcHm_v2.0_Chr7g0195441 Rosa chinensis HOM05D002129 ORTHO05D002188 3.3e-12 75.9 154 35.7
Sabra03G0098800 Salix brachista HOM05D002129 ORTHO05D002188 1.6e-11 73.6 140 33.6
COL.COLO4_21719 Corchorus olitorius HOM05D002129 ORTHO05D002188 2.1e-11 73.2 132 34.8
Potri.003G137300 Populus trichocarpa HOM05D002129 ORTHO05D002188 4.7e-11 72.0 156 32.1
FvH4_5g04071 Fragaria vesca HOM05D002129 ORTHO05D002188 6.2e-11 71.6 143 31.5
FAN04G1467 Fragaria x ananassa HOM05D002129 ORTHO05D002188 6.2e-11 71.6 143 31.5
FAN18G1710 Fragaria x ananassa HOM05D002129 ORTHO05D002188 6.2e-11 71.6 143 31.5
FAN18G4347 Fragaria x ananassa HOM05D002129 ORTHO05D002188 6.2e-11 71.6 143 31.5
FAN13G0971 Fragaria x ananassa HOM05D002129 ORTHO05D002188 8.0e-11 71.2 146 32.9
Duzib205G1563 Durio zibethinus HOM05D002129 ORTHO05D002188 1.1e-10 70.9 136 32.4
Duzib084G0477 Durio zibethinus HOM05D002129 ORTHO05D002188 1.4e-10 70.5 120 35.0
Dinv38857 Davidia involucrata HOM05D002129 ORTHO05D002188 1.8e-10 70.1 111 36.9
PGSC0003DMG400004988 Solanum tuberosum HOM05D002129 ORTHO05D002188 2.3e-10 69.7 111 39.6
Duzib068G0910 Durio zibethinus HOM05D002129 ORTHO05D002188 8.9e-10 67.8 98 40.8
Sopen12g028580 Solanum pennellii HOM05D002129 ORTHO05D002188 8.9e-10 67.8 120 35.8
Solyc12g056060.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 1.2e-09 67.4 120 35.8
CSS0027740 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.5e-09 67.0 111 38.7
Lj8P210T83 Lonicera japonica HOM05D002129 ORTHO05D002188 2.6e-09 66.2 77 42.9
Lj4g0006933 Lotus japonicus HOM05D002129 ORTHO05D002188 2.6e-09 66.2 111 36.9
TPR.G3398 Trifolium pratense HOM05D002129 ORTHO05D002188 2.6e-09 66.2 104 39.4
CSS0018198 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 4.4e-09 65.5 111 38.7
Dinv37551 Davidia involucrata HOM05D002129 ORTHO05D002188 4.4e-09 65.5 113 35.4
LjContig00312_ERROPOS870357g0010036 Lotus japonicus HOM05D002129 ORTHO05D002188 4.4e-09 65.5 111 33.3
Psat0s4440g0080 Pisum sativum HOM05D002129 ORTHO05D002188 5.8e-09 65.1 129 35.7
CSS0006894 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.7e-08 63.5 138 32.6
Lalb_Chr16g0376981 Lupinus albus HOM05D002129 ORTHO05D002188 1.7e-08 63.5 121 34.7
CSS0047098 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 2.9e-08 62.8 120 33.3
Medtr8g099265 Medicago truncatula HOM05D002129 ORTHO05D002188 2.9e-08 62.8 139 33.1
arahy.Tifrunner.gnm1.ann1.X2XLI1 Arachis hypogaea HOM05D002129 ORTHO05D002188 3.7e-08 62.4 99 40.4
Migut.E01235 Erythranthe guttata HOM05D002129 ORTHO05D002188 6.4e-08 61.6 96 38.5
Psat7g027480 Pisum sativum HOM05D002129 ORTHO05D002188 6.4e-08 61.6 144 32.6
Manes.01G046000 Manihot esculenta HOM05D002129 ORTHO05D002188 8.3e-08 61.2 135 34.8
Lalb_Chr05g0224251 Lupinus albus HOM05D002129 ORTHO05D002188 1.1e-07 60.8 135 33.3
Cc08_g15770 Coffea canephora HOM05D002129 ORTHO05D002188 2.4e-07 59.7 135 33.3
TPR.G6696 Trifolium pratense HOM05D002129 ORTHO05D002188 2.4e-07 59.7 116 34.5
AUR62010808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 4.1e-07 58.9 93 40.9
Gohir.D03G081800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 4.1e-07 58.9 147 32.0
Gorai.003G081800 Gossypium raimondii HOM05D002129 ORTHO05D002188 4.1e-07 58.9 147 32.0
Peaxi162Scf00102g00176 Petunia axillaris HOM05D002129 ORTHO05D002188 4.1e-07 58.9 118 33.1
Rhsim02G0241100 Rhododendron simsii HOM05D002129 ORTHO05D002188 5.4e-07 58.5 114 36.0
CAN.G26.3 Capsicum annuum HOM05D002129 ORTHO05D002188 7.1e-07 58.2 80 41.2
Oeu061086.1 Olea europaea HOM05D002129 ORTHO05D002188 7.1e-07 58.2 83 38.6
arahy.Tifrunner.gnm1.ann1.CM611Z Arachis hypogaea HOM05D002129 ORTHO05D002188 9.2e-07 57.8 93 40.9
Gohir.A02G102300 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.2e-06 57.4 147 31.3
PGSC0003DMG400005787 Solanum tuberosum HOM05D002129 ORTHO05D002188 1.6e-06 57.0 96 35.4
MELO3C016309.2 Cucumis melo HOM05D002129 ORTHO05D002188 2.1e-06 56.6 108 36.1
Glyma.08G021300 Glycine max HOM05D002129 ORTHO05D002188 2.7e-06 56.2 65 47.7
Oeu042385.1 Olea europaea HOM05D002129 ORTHO05D002188 2.7e-06 56.2 99 36.4
Solyc08g008260.2 Solanum lycopersicum HOM05D002129 ORTHO05D002188 2.7e-06 56.2 76 42.1
Sopen08g004110 Solanum pennellii HOM05D002129 ORTHO05D002188 2.7e-06 56.2 76 42.1
ClCG07G014890 Citrullus lanatus HOM05D002129 ORTHO05D002188 3.5e-06 55.8 129 32.6
QL02p031447 Quercus lobata HOM05D002129 ORTHO05D002188 3.5e-06 55.8 126 30.2
AUR62019807 Chenopodium quinoa HOM05D002129 ORTHO05D002188 4.6e-06 55.5 93 38.7


User provided reference genes

Program Settings