Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t36323H Brassica oleracea HOM05D008309 ORTHO05D010308 1.9e-88 329.3 187 100.0
C06p11900 Brassica napus HOM05D008309 ORTHO05D010308 6.5e-57 224.6 132 88.6
A01p27270 Brassica napus HOM05D008309 ORTHO05D010308 3.5e-50 202.2 132 90.2
A05p38910 Brassica napus HOM05D008309 ORTHO05D010308 1.0e-49 200.7 137 86.9
A01p29020 Brassica napus HOM05D008309 ORTHO05D010308 2.3e-38 162.9 132 75.0
BraA01t02998Z Brassica rapa HOM05D008309 ORTHO05D010308 3.4e-37 159.1 132 73.5
C01p42640 Brassica napus HOM05D008309 ORTHO05D010308 1.5e-32 143.7 118 58.5
A04p20790 Brassica napus HOM05D008309 ORTHO05D010308 1.2e-26 124.0 116 55.2
BolC3t19893H Brassica oleracea HOM05D008309 ORTHO05D010308 1.2e-26 124.0 116 55.2
BolC8t50055H Brassica oleracea HOM05D008309 ORTHO05D010308 1.2e-26 124.0 116 55.2
BraA04t17652Z Brassica rapa HOM05D008309 ORTHO05D010308 1.2e-26 124.0 116 55.2
AT1G40087 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 2.0e-26 123.2 118 59.3
A03p63400 Brassica napus HOM05D008309 ORTHO05D010308 3.5e-26 122.5 133 49.6
BraA06t25453Z Brassica rapa HOM05D008309 ORTHO05D010308 3.5e-26 122.5 133 49.6
BolC2t08113H Brassica oleracea HOM05D008309 ORTHO05D010308 1.0e-25 120.9 116 54.3
BolC4t26644H Brassica oleracea HOM05D008309 ORTHO05D010308 3.9e-25 119.0 128 50.8
BolC9t56521H Brassica oleracea HOM05D008309 ORTHO05D010308 5.0e-25 118.6 133 48.1
AT3G30200 Arabidopsis thaliana HOM05D008309 ORTHO05D010308 8.6e-25 117.9 118 57.6
C04p50470 Brassica napus HOM05D008309 ORTHO05D010308 1.1e-24 117.5 128 51.6
A09p47040 Brassica napus HOM05D008309 ORTHO05D010308 2.5e-24 116.3 109 56.9
BraA09t40169Z Brassica rapa HOM05D008309 ORTHO05D010308 2.5e-24 116.3 109 56.9
BraA10t44443Z Brassica rapa HOM05D008309 ORTHO05D010308 7.3e-24 114.8 141 46.1
BolC2t10136H Brassica oleracea HOM05D008309 ORTHO05D010308 9.5e-24 114.4 109 56.0
C05p49520 Brassica napus HOM05D008309 ORTHO05D010308 6.2e-23 111.7 98 57.1
C04p48940 Brassica napus HOM05D008309 ORTHO05D010308 1.8e-22 110.2 117 52.1
A09p31580 Brassica napus HOM05D008309 ORTHO05D010308 4.0e-22 109.0 94 58.5
AL2G20190 Arabidopsis lyrata HOM05D008309 ORTHO05D010308 4.4e-21 105.5 76 76.3
A09p43080 Brassica napus HOM05D008309 ORTHO05D010308 1.9e-19 100.1 52 98.1
AL1G63190 Arabidopsis lyrata HOM05D008309 ORTHO05D010308 7.1e-19 98.2 117 42.7
AL1G66070 Arabidopsis lyrata HOM05D000107 ORTHO05D000062 4.6e-18 95.5 111 44.1
C02p41170 Brassica napus HOM05D008309 ORTHO05D010308 4.7e-15 85.5 71 57.7
BolC8t48093H Brassica oleracea HOM05D008309 ORTHO05D010308 4.0e-14 82.4 76 55.3
C09p36910 Brassica napus HOM05D008309 ORTHO05D010308 4.4e-13 79.0 66 57.6
BolSC30t60633H Brassica oleracea HOM05D008309 ORTHO05D010308 5.8e-13 78.6 66 57.6
arahy.Tifrunner.gnm1.ann1.N8CY10 Arachis hypogaea HOM05D009662 ORTHO05D003353 1.9e-11 73.6 96 38.5
A09p53580 Brassica napus HOM05D008309 ORTHO05D010308 9.2e-11 71.2 101 41.6
arahy.Tifrunner.gnm1.ann1.LE5ID3 Arachis hypogaea HOM05D009662 ORTHO05D003353 1.6e-10 70.5 96 38.5
BolC4t26475H Brassica oleracea HOM05D008309 ORTHO05D010308 3.5e-10 69.3 81 48.1
Nitab4.5_0000051g0340 Nicotiana tabacum HOM05D002954 ORTHO05D003353 1.3e-09 67.4 87 43.7
CiPaw.10G087600 Carya illinoinensis HOM05D001309 ORTHO05D000385 1.7e-09 67.0 111 38.7
arahy.Tifrunner.gnm1.ann1.FG1AAR Arachis hypogaea HOM05D009662 ORTHO05D003353 3.9e-09 65.9 95 37.9
Lj1g0022399 Lotus japonicus HOM05D000107 ORTHO05D000062 6.6e-09 65.1 96 40.6
TWI75G0500 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 6.6e-09 65.1 173 31.2
CiPaw.16G058400 Carya illinoinensis HOM05D001309 ORTHO05D000385 8.6e-09 64.7 113 38.9
CiPaw.16G105200 Carya illinoinensis HOM05D001309 ORTHO05D000385 8.6e-09 64.7 111 37.8
CiPaw.09G181600 Carya illinoinensis HOM05D001309 ORTHO05D000385 1.5e-08 63.9 113 38.1
TPR.G16180 Trifolium pratense HOM05D002954 ORTHO05D003353 1.9e-08 63.5 98 36.7
arahy.Tifrunner.gnm1.ann1.C14DTV Arachis hypogaea HOM05D009662 ORTHO05D003353 2.5e-08 63.2 103 35.9
arahy.Tifrunner.gnm1.ann1.R7YZCH Arachis hypogaea HOM05D002954 ORTHO05D003353 3.3e-08 62.8 92 35.9
Glyma.20G055700 Glycine max HOM05D002954 ORTHO05D003353 3.3e-08 62.8 123 39.0
Solyc11g044937.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 4.3e-08 62.4 107 36.4
arahy.Tifrunner.gnm1.ann1.0Q01G3 Arachis hypogaea HOM05D002954 ORTHO05D003353 7.3e-08 61.6 92 34.8
arahy.Tifrunner.gnm1.ann1.9YTX13 Arachis hypogaea HOM05D002954 ORTHO05D003353 9.6e-08 61.2 112 34.8
arahy.Tifrunner.gnm1.ann1.NE3TTV Arachis hypogaea HOM05D002954 ORTHO05D003353 9.6e-08 61.2 92 34.8
Nitab4.5_0000386g0150 Nicotiana tabacum HOM05D002954 ORTHO05D003353 9.6e-08 61.2 86 37.2
TWI15G0427 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 9.6e-08 61.2 110 36.4
arahy.Tifrunner.gnm1.ann1.QKP2RW Arachis hypogaea HOM05D002954 ORTHO05D003353 1.2e-07 60.8 77 40.3
CSS0007321 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.2e-07 60.8 85 44.7
CSS0017872 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.2e-07 60.8 85 44.7
TWI53G0470 Tripterygium wilfordii HOM05D001309 ORTHO05D000385 1.2e-07 60.8 110 35.5
arahy.Tifrunner.gnm1.ann1.T3L04J Arachis hypogaea HOM05D009662 ORTHO05D003353 1.6e-07 60.5 86 43.0
Psat0s4310g0080 Pisum sativum HOM05D016237 ORTHO05D010767 1.6e-07 60.5 117 28.2
arahy.Tifrunner.gnm1.ann1.ZY1J0Y Arachis hypogaea HOM05D002954 ORTHO05D003353 2.1e-07 60.1 92 34.8
Psat0s797g0080 Pisum sativum HOM05D002954 ORTHO05D010767 2.1e-07 60.1 117 28.2
CSS0011055 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.8e-07 59.7 78 47.4
CSS0011333 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.8e-07 59.7 78 47.4
CSS0024690 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.8e-07 59.7 78 47.4
CSS0042181 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.8e-07 59.7 78 47.4
Solyc01g010405.1 Solanum lycopersicum HOM05D002954 ORTHO05D003353 2.8e-07 59.7 104 36.5
CSS0004946 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.6e-07 59.3 78 47.4
ClCG06G005780 Citrullus lanatus HOM05D001309 ORTHO05D000385 3.6e-07 59.3 90 35.6
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 6.2e-07 58.5 96 34.4
Lsat_1_v5_gn_4_141161 Lactuca sativa HOM05D001309 ORTHO05D000385 6.2e-07 58.5 97 33.0
CSS0000023 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 8.1e-07 58.2 78 46.2
CSS0036507 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 8.1e-07 58.2 84 42.9
Lsat_1_v5_gn_7_21840 Lactuca sativa HOM05D008309 ORTHO05D012513 8.1e-07 58.2 97 33.0
Psat5g178080 Pisum sativum HOM05D002954 ORTHO05D003353 8.1e-07 58.2 80 38.8
TPR.G24473 Trifolium pratense HOM05D024240 ORTHO05D000385 8.1e-07 58.2 102 37.3
Ca_23710_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 1.4e-06 57.4 101 38.6
Nn1g02510 Nelumbo nucifera HOM05D001309 ORTHO05D000385 1.4e-06 57.4 106 35.8
Lsat_1_v5_gn_7_106640 Lactuca sativa HOM05D011604 ORTHO05D012513 1.8e-06 57.0 98 34.7
MBI11_g30647_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.4e-06 56.6 97 35.1
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 2.4e-06 56.6 79 36.7
BcaC06g31080 Brassica carinata HOM05D008309 ORTHO05D010308 3.1e-06 56.2 60 46.7
Peaxi162Scf01294g00128 Petunia axillaris HOM05D009128 ORTHO05D011389 3.1e-06 56.2 91 36.3
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 4.0e-06 55.8 125 36.0
Lj5g0025673 Lotus japonicus HOM05D001309 ORTHO05D000385 4.0e-06 55.8 97 43.3
BolC9t56420H Brassica oleracea HOM05D010920 ORTHO05D010308 5.2e-06 55.5 26 100.0
ClCG09G013760 Citrullus lanatus HOM05D001309 ORTHO05D000385 5.2e-06 55.5 120 29.2
Lsat_1_v5_gn_7_106561 Lactuca sativa HOM05D001309 ORTHO05D000385 5.2e-06 55.5 84 36.9
TPR.G32610 Trifolium pratense HOM05D002954 ORTHO05D003353 5.2e-06 55.5 74 40.5
Lj4g0009760 Lotus japonicus HOM05D002954 ORTHO05D003353 6.8e-06 55.1 114 33.3
Lj5g0000508 Lotus japonicus HOM05D002954 ORTHO05D003353 6.8e-06 55.1 96 36.5
Lj6g0018229 Lotus japonicus HOM05D002954 ORTHO05D003353 6.8e-06 55.1 125 33.6
Ca_12697_v3 Cicer arietinum L. HOM05D009128 ORTHO05D011389 8.9e-06 54.7 138 31.9
TPR.G34719 Trifolium pratense HOM05D002954 ORTHO05D000385 8.9e-06 54.7 124 33.1


User provided reference genes

Program Settings