Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t36264H Brassica oleracea HOM05D014038 ORTHO05D015508 2.9e-58 228.4 118 100.0
BolC9t57079H Brassica oleracea HOM05D014038 ORTHO05D015508 4.9e-34 147.9 94 85.1
BolC1t02637H Brassica oleracea HOM05D014038 ORTHO05D015508 6.4e-34 147.5 96 82.3
BcaC01g00490 Brassica carinata HOM05D014038 ORTHO05D032534 9.9e-27 123.6 103 69.9
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 3.8e-26 121.7 102 68.6
BcaC04g20577 Brassica carinata HOM05D014038 ORTHO05D015508 1.4e-25 119.8 78 82.1
BolC4t25315H Brassica oleracea HOM05D014038 ORTHO05D032534 1.6e-24 116.3 127 61.4
BolC7t42064H Brassica oleracea HOM05D014038 ORTHO05D015508 3.0e-23 112.1 117 57.3
BolC4t24215H Brassica oleracea HOM05D014038 ORTHO05D015508 2.5e-22 109.0 117 55.6
BcaC07g37289 Brassica carinata HOM05D014038 ORTHO05D032534 6.4e-18 94.4 57 82.5
A08p12410 Brassica napus HOM05D000768 ORTHO05D000665 1.9e-09 66.2 82 48.8
BolC8t48336H Brassica oleracea HOM05D000768 ORTHO05D000665 1.9e-09 66.2 82 48.8
BraA08t33215Z Brassica rapa HOM05D000768 ORTHO05D000665 1.9e-09 66.2 82 48.8
BcaNung00223 Brassica carinata HOM05D000768 ORTHO05D000665 4.2e-09 65.1 79 48.1
BcaC07g37953 Brassica carinata HOM05D000768 ORTHO05D000665 5.5e-09 64.7 82 48.8
Sp7g14620 Schrenkiella parvula HOM05D000768 ORTHO05D000665 5.5e-09 64.7 82 50.0
CARHR222440 Cardamine hirsuta HOM05D000768 ORTHO05D000665 7.1e-09 64.3 82 48.8
AL7G39010 Arabidopsis lyrata HOM05D000768 ORTHO05D000665 9.3e-09 63.9 82 46.3
Thhalv10024884m.g Eutrema salsugineum HOM05D000768 ORTHO05D000665 9.3e-09 63.9 82 47.6
Prupe.1G125900 Prunus persica HOM05D000768 ORTHO05D000665 9.3e-09 63.9 77 49.4
GSVIVG01035047001 Vitis vinifera HOM05D000768 ORTHO05D000665 9.3e-09 63.9 77 49.4
BcaC06g33467 Brassica carinata HOM05D000768 ORTHO05D000665 1.2e-08 63.5 83 48.2
C07p47670 Brassica napus HOM05D000768 ORTHO05D000665 1.2e-08 63.5 83 48.2
BolC7t45290H Brassica oleracea HOM05D000768 ORTHO05D000665 1.2e-08 63.5 83 48.2
BcaC09g50305 Brassica carinata HOM05D000768 ORTHO05D000665 2.1e-08 62.8 79 49.4
A01p21470 Brassica napus HOM05D000768 ORTHO05D000665 2.1e-08 62.8 79 49.4
C01p26810 Brassica napus HOM05D000768 ORTHO05D000665 2.1e-08 62.8 79 49.4
BolC1t02625H Brassica oleracea HOM05D000768 ORTHO05D000665 2.1e-08 62.8 79 49.4
BraA01t02054Z Brassica rapa HOM05D000768 ORTHO05D000665 2.1e-08 62.8 79 49.4
ClCG06G004800 Citrullus lanatus HOM05D000768 ORTHO05D000665 2.1e-08 62.8 77 48.1
MELO3C021289.2 Cucumis melo HOM05D000768 ORTHO05D000665 2.1e-08 62.8 77 48.1
CsaV3_6G022590 Cucumis sativus L. HOM05D000768 ORTHO05D000665 2.1e-08 62.8 77 48.1
BcaC06g32987 Brassica carinata HOM05D000768 ORTHO05D000665 2.7e-08 62.4 83 47.0
A03p49610 Brassica napus HOM05D000768 ORTHO05D000665 3.5e-08 62.0 88 47.7
THA.LOC104827087 Tarenaya hassleriana HOM05D000768 ORTHO05D000665 3.5e-08 62.0 124 37.9
AT4G16143 Arabidopsis thaliana HOM05D000768 ORTHO05D000665 4.6e-08 61.6 82 45.1
BraA03t14058Z Brassica rapa HOM05D000768 ORTHO05D000665 4.6e-08 61.6 88 45.5
Sed0015733 Sechium edule HOM05D000768 ORTHO05D000665 6.0e-08 61.2 99 43.4
Aa31LG10G6010 Aethionema arabicum HOM05D000768 ORTHO05D000665 7.9e-08 60.8 77 45.5
Sabra08G0149700 Salix brachista HOM05D000768 ORTHO05D000665 7.9e-08 60.8 78 46.2
Thecc.04G294700 Theobroma cacao HOM05D000768 ORTHO05D000665 7.9e-08 60.8 77 48.1
Cpa.g.sc9.100 Carica papaya HOM05D000768 ORTHO05D000665 1.3e-07 60.1 78 47.4
CSS0032699 Camellia sinensis var. sinensis HOM05D000768 ORTHO05D000665 1.8e-07 59.7 77 48.1
Dinv44321 Davidia involucrata HOM05D000768 ORTHO05D000665 1.8e-07 59.7 77 46.8
Lj3C827T16 Lonicera japonica HOM05D000768 ORTHO05D000665 1.8e-07 59.7 77 46.8
MD13G1158900 Malus domestica HOM05D000768 ORTHO05D000665 1.8e-07 59.7 77 45.5
Peaxi162Scf00071g00429 Petunia axillaris HOM05D000768 ORTHO05D000665 1.8e-07 59.7 77 44.2
Sed0012334 Sechium edule HOM05D000768 ORTHO05D000665 1.8e-07 59.7 99 41.4
AT3G06720 Arabidopsis thaliana HOM05D000768 ORTHO05D000665 2.3e-07 59.3 124 35.5
MSTRG.10132 Avicennia marina HOM05D000768 ORTHO05D000665 2.3e-07 59.3 77 46.8
CAN.G197.20 Capsicum annuum HOM05D000768 ORTHO05D000665 2.3e-07 59.3 79 46.8
Solyc08g041890.4 Solanum lycopersicum HOM05D000768 ORTHO05D000665 2.3e-07 59.3 77 44.2
CiPaw.02G077200 Carya illinoinensis HOM05D000768 ORTHO05D000665 3.0e-07 58.9 78 46.2
Duzib052G0350 Durio zibethinus HOM05D000768 ORTHO05D000665 3.0e-07 58.9 77 45.5
Gohir.A01G034100 Gossypium hirsutum HOM05D000768 ORTHO05D000665 3.0e-07 58.9 124 37.9
TAR365G0737 Trochodendron aralioides HOM05D000768 ORTHO05D000665 3.0e-07 58.9 77 46.8
vmacro02419 Vaccinium macrocarpon HOM05D000768 ORTHO05D000665 3.0e-07 58.9 77 45.5
CSS0004453 Camellia sinensis var. sinensis HOM05D000768 ORTHO05D000665 3.9e-07 58.5 77 45.5
CSS0015816 Camellia sinensis var. sinensis HOM05D000768 ORTHO05D000665 3.9e-07 58.5 77 45.5
Cfa015477 Carpinus fangiana HOM05D000768 ORTHO05D000665 3.9e-07 58.5 78 46.2
Haze_01090 Corylus avellana HOM05D000768 ORTHO05D000665 3.9e-07 58.5 78 46.2
Gohir.D01G023529 Gossypium hirsutum HOM05D000768 ORTHO05D000665 3.9e-07 58.5 124 37.9
Gorai.002G029800 Gossypium raimondii HOM05D000768 ORTHO05D000665 3.9e-07 58.5 124 37.9
Potri.010G001400 Populus trichocarpa HOM05D000768 ORTHO05D000665 3.9e-07 58.5 78 44.9
VMungo1215G1519 Vigna mungo HOM05D000768 ORTHO05D000665 3.9e-07 58.5 78 43.6
GSVIVG01028079001 Vitis vinifera HOM05D000768 ORTHO05D000665 3.9e-07 58.5 77 45.5
Hma1.2p1_0013F.1_g008940 Hydrangea macrophylla HOM05D000768 ORTHO05D000665 5.1e-07 58.2 78 47.4
Hma1.2p1_1302F.1_g274380 Hydrangea macrophylla HOM05D000768 ORTHO05D000665 5.1e-07 58.2 77 44.2
Lj6A684G53 Lonicera japonica HOM05D000768 ORTHO05D000665 5.1e-07 58.2 77 44.2
Nn4g25671 Nelumbo nucifera HOM05D000768 ORTHO05D000665 5.1e-07 58.2 77 44.2
Nitab4.5_0002142g0050 Nicotiana tabacum HOM05D000768 ORTHO05D000665 5.1e-07 58.2 77 42.9
Peaxi162Scf00065g00326 Petunia axillaris HOM05D000768 ORTHO05D000665 5.1e-07 58.2 78 46.2
Rhsim04G0232100 Rhododendron simsii HOM05D000768 ORTHO05D000665 5.1e-07 58.2 80 47.5
Rhsim13G0006800 Rhododendron simsii HOM05D000768 ORTHO05D000665 5.1e-07 58.2 77 44.2
Sopen08g012120 Solanum pennellii HOM05D000768 ORTHO05D000665 5.1e-07 58.2 77 42.9
TWI56G0035 Tripterygium wilfordii HOM05D000768 ORTHO05D000665 5.1e-07 58.2 77 42.9
Aa31LG5G17310 Aethionema arabicum HOM05D000768 ORTHO05D000665 6.7e-07 57.8 128 38.3
Cfa005848 Carpinus fangiana HOM05D000768 ORTHO05D000665 6.7e-07 57.8 78 46.2
Gohir.A02G053100 Gossypium hirsutum HOM05D000768 ORTHO05D000665 6.7e-07 57.8 99 41.4
Gohir.D02G057900 Gossypium hirsutum HOM05D000768 ORTHO05D000665 6.7e-07 57.8 99 41.4
Gorai.005G065400 Gossypium raimondii HOM05D000768 ORTHO05D000665 6.7e-07 57.8 99 41.4
Manes.03G201400 Manihot esculenta HOM05D000768 ORTHO05D000665 6.7e-07 57.8 77 45.5
Medtr2g034900 Medicago truncatula HOM05D000768 ORTHO05D000665 6.7e-07 57.8 78 43.6
HPP92_011865 Vanilla planifolia HOM05D000768 ORTHO05D000665 6.7e-07 57.8 77 48.1
CiPaw.01G142500 Carya illinoinensis HOM05D000768 ORTHO05D000665 8.7e-07 57.4 78 44.9
CiPaw.07G027000 Carya illinoinensis HOM05D000768 ORTHO05D000665 8.7e-07 57.4 77 45.5
Cc02_g34650 Coffea canephora HOM05D000768 ORTHO05D000665 8.7e-07 57.4 76 44.7
Duzib151G0045 Durio zibethinus HOM05D000768 ORTHO05D000665 8.7e-07 57.4 77 45.5
Manes.05G001300 Manihot esculenta HOM05D000768 ORTHO05D000665 8.7e-07 57.4 79 43.0
CSS0004462 Camellia sinensis var. sinensis HOM05D000768 ORTHO05D000665 1.1e-06 57.0 79 44.3
FvH4_4g19270 Fragaria vesca HOM05D000768 ORTHO05D000665 1.1e-06 57.0 77 44.2
FAN07G2224 Fragaria x ananassa HOM05D000768 ORTHO05D000665 1.1e-06 57.0 77 44.2
FAN12G1060 Fragaria x ananassa HOM05D000768 ORTHO05D000665 1.1e-06 57.0 77 44.2
Nitab4.5_0000169g0010 Nicotiana tabacum HOM05D000768 ORTHO05D000665 1.1e-06 57.0 79 45.6
Nitab4.5_0000176g0110 Nicotiana tabacum HOM05D000768 ORTHO05D000665 1.1e-06 57.0 77 41.6
Potri.008G214100 Populus trichocarpa HOM05D000768 ORTHO05D000665 1.1e-06 57.0 78 44.9
SalBow8G0469 Salvia bowleyana HOM05D000768 ORTHO05D000665 1.1e-06 57.0 77 41.6
SalBow8G4145 Salvia bowleyana HOM05D000768 ORTHO05D000665 1.1e-06 57.0 77 41.6
PGSC0003DMG400029895 Solanum tuberosum HOM05D000768 ORTHO05D000665 1.1e-06 57.0 77 41.6
TAR636G0125 Trochodendron aralioides HOM05D000768 ORTHO05D000665 1.1e-06 57.0 77 45.5
vmacro08078 Vaccinium macrocarpon HOM05D000768 ORTHO05D000665 1.1e-06 57.0 79 46.8
Dinv02071 Davidia involucrata HOM05D000768 ORTHO05D000665 1.5e-06 56.6 77 45.5
Glyma.17G031000 Glycine max HOM05D000768 ORTHO05D000665 1.5e-06 56.6 78 41.0
MBI18_g04584_MAGBIO Magnolia biondii HOM05D000768 ORTHO05D000665 1.5e-06 56.6 99 38.4
RcHm_v2.0_Chr4g0424261 Rosa chinensis HOM05D000768 ORTHO05D000665 1.5e-06 56.6 77 45.5
Solyc06g009750.4 Solanum lycopersicum HOM05D000768 ORTHO05D000665 1.5e-06 56.6 78 42.3
Sopen06g004370 Solanum pennellii HOM05D000768 ORTHO05D000665 1.5e-06 56.6 78 42.3
PGSC0003DMG400007289 Solanum tuberosum HOM05D000768 ORTHO05D000665 1.5e-06 56.6 78 42.3
TAR633G2566 Trochodendron aralioides HOM05D000768 ORTHO05D000665 1.5e-06 56.6 77 42.9
Actinidia40350 Actinidia chinensis HOM05D000768 ORTHO05D000665 1.9e-06 56.2 77 45.5
CSS0043260 Camellia sinensis var. sinensis HOM05D000768 ORTHO05D000665 1.9e-06 56.2 77 45.5
CiPaw.08G157300 Carya illinoinensis HOM05D000768 ORTHO05D000665 1.9e-06 56.2 77 44.2
Phvul.009G253500 Phaseolus vulgaris HOM05D000768 ORTHO05D000665 1.9e-06 56.2 78 43.6
THA.LOC104821791 Tarenaya hassleriana HOM05D000768 ORTHO05D000665 1.9e-06 56.2 82 43.9
Actinidia15582 Actinidia chinensis HOM05D000768 ORTHO05D000665 2.5e-06 55.8 77 44.2
Actinidia21014 Actinidia chinensis HOM05D000768 ORTHO05D000665 2.5e-06 55.8 77 44.2
CSS0021347 Camellia sinensis var. sinensis HOM05D000768 ORTHO05D000665 2.5e-06 55.8 79 44.3
CANSAT78G0515 Cannabis sativa HOM05D000768 ORTHO05D000665 2.5e-06 55.8 78 47.4
Cc03_g01180 Coffea canephora HOM05D000768 ORTHO05D000665 2.5e-06 55.8 76 44.7
FAN12G4348 Fragaria x ananassa HOM05D000768 ORTHO05D000665 2.5e-06 55.8 77 42.9
Phvul.003G110500 Phaseolus vulgaris HOM05D000768 ORTHO05D000665 2.5e-06 55.8 78 42.3
Hund03097 Selenicereus undatus HOM05D000768 ORTHO05D000665 2.5e-06 55.8 77 44.2
CAN.G368.3 Capsicum annuum HOM05D000768 ORTHO05D000665 3.3e-06 55.5 77 40.3
CARHR081320 Cardamine hirsuta HOM05D000768 ORTHO05D000665 3.3e-06 55.5 81 44.4
Migut.G00104 Erythranthe guttata HOM05D000768 ORTHO05D000665 3.3e-06 55.5 78 43.6
Nn3g21613 Nelumbo nucifera HOM05D000768 ORTHO05D000665 3.3e-06 55.5 77 42.9
PGR004G0384 Punica granatum HOM05D000768 ORTHO05D000665 3.3e-06 55.5 79 45.6
QL06p011292 Quercus lobata HOM05D000768 ORTHO05D000665 3.3e-06 55.5 83 43.4
Sopen01g026610 Solanum pennellii HOM05D000768 ORTHO05D000665 3.3e-06 55.5 79 41.8
PGSC0003DMG400014989 Solanum tuberosum HOM05D000768 ORTHO05D000665 3.3e-06 55.5 79 41.8
Carub.0007s2545 Capsella rubella HOM05D000768 ORTHO05D000665 4.3e-06 55.1 82 41.5
Dinv30863 Davidia involucrata HOM05D000768 ORTHO05D000665 4.3e-06 55.1 79 41.8
Dinv33095 Davidia involucrata HOM05D000768 ORTHO05D000665 4.3e-06 55.1 77 42.9
Lalb_Chr18g0058931 Lupinus albus HOM05D000768 ORTHO05D000665 4.3e-06 55.1 79 41.8
Solyc01g060470.3 Solanum lycopersicum HOM05D000768 ORTHO05D000665 4.3e-06 55.1 80 41.2
TPR.G27712 Trifolium pratense HOM05D000768 ORTHO05D000665 4.3e-06 55.1 78 44.9
Actinidia21513 Actinidia chinensis HOM05D000768 ORTHO05D000665 5.6e-06 54.7 101 39.6
Haze_05000 Corylus avellana HOM05D000768 ORTHO05D000665 5.6e-06 54.7 81 40.7
Migut.D00107 Erythranthe guttata HOM05D000768 ORTHO05D000665 5.6e-06 54.7 77 41.6
Thhalv10020480m.g Eutrema salsugineum HOM05D000768 ORTHO05D000665 5.6e-06 54.7 128 37.5
BcaB04g18363 Brassica carinata HOM05D000768 ORTHO05D000665 7.4e-06 54.3 84 42.9
Lj6g0018721 Lotus japonicus HOM05D000768 ORTHO05D000665 7.4e-06 54.3 79 43.0
Prupe.6G315900 Prunus persica HOM05D000768 ORTHO05D000665 7.4e-06 54.3 77 42.9
SEGI_31727 Sequoiadendron giganteum HOM05D000768 ORTHO05D000665 7.4e-06 54.3 77 40.3
Zm00001eb127630 Zea mays HOM05D000768 ORTHO05D000665 7.4e-06 54.3 74 44.6
Actinidia25832 Actinidia chinensis HOM05D000768 ORTHO05D000665 9.6e-06 53.9 77 42.9
CDE08G1438 Ceratophyllum demersum HOM05D000768 ORTHO05D000665 9.6e-06 53.9 99 39.4
ECA234G0890 Erigeron canadensis HOM05D000768 ORTHO05D000665 9.6e-06 53.9 78 42.3
Sabra10G0001100 Salix brachista HOM05D000768 ORTHO05D000665 9.6e-06 53.9 78 44.9
VMungo1309G0839 Vigna mungo HOM05D000768 ORTHO05D000665 9.6e-06 53.9 78 42.3


User provided reference genes

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