Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t36068H Brassica oleracea HOM05D003244 ORTHO05D003645 5.7e-181 637.5 332 100.0
BcaC08g43597 Brassica carinata HOM05D003244 ORTHO05D003645 2.0e-173 612.5 332 97.6
C06p09950 Brassica napus HOM05D003244 ORTHO05D003645 2.0e-173 612.5 332 97.6
A06p00490 Brassica napus HOM05D003244 ORTHO05D003645 1.7e-164 582.8 333 94.3
BraA06t23264Z Brassica rapa HOM05D003244 ORTHO05D003645 3.4e-141 505.4 298 93.0
Thhalv10011331m.g Eutrema salsugineum HOM05D003244 ORTHO05D003645 1.6e-127 459.9 338 78.7
Sp1g40620 Schrenkiella parvula HOM05D003244 ORTHO05D003645 9.0e-126 454.1 338 78.1
AL1G62890 Arabidopsis lyrata HOM05D003244 ORTHO05D003645 2.8e-95 352.8 338 64.8
AT1G54170 Arabidopsis thaliana HOM05D003244 ORTHO05D003645 6.7e-89 331.6 341 64.5
CARHR044520 Cardamine hirsuta HOM05D003244 ORTHO05D003645 1.1e-88 330.9 342 63.5
A05p17720 Brassica napus HOM05D003244 ORTHO05D003645 5.3e-86 322.0 330 63.6
C06p15680 Brassica napus HOM05D003244 ORTHO05D003645 1.1e-83 314.3 329 63.5
BcaC08g44167 Brassica carinata HOM05D003244 ORTHO05D003645 1.8e-73 280.4 307 60.6
Carub.0001s4341 Capsella rubella HOM05D003244 ORTHO05D003645 1.3e-68 264.2 347 53.9
BcaB02g10857 Brassica carinata HOM05D003244 ORTHO05D003645 1.7e-68 263.8 333 55.3
BcaB07g33254 Brassica carinata HOM05D003244 ORTHO05D003645 2.3e-60 236.9 260 57.3
THA.LOC104815625 Tarenaya hassleriana HOM05D003244 ORTHO05D003645 2.8e-58 229.9 363 47.9
Aa31LG8G1220 Aethionema arabicum HOM05D003244 ORTHO05D003645 5.4e-54 215.7 353 50.7
CARHR088820 Cardamine hirsuta HOM05D003244 ORTHO05D003645 2.7e-37 160.2 366 41.8
CANSAT56G4312 Cannabis sativa HOM05D003244 ORTHO05D003645 3.9e-36 156.4 370 38.1
Cpa.g.sc25.97 Carica papaya HOM05D003244 ORTHO05D003645 3.9e-36 156.4 374 38.2
RcHm_v2.0_Chr2g0144721 Rosa chinensis HOM05D003244 ORTHO05D003645 1.6e-34 151.0 377 36.6
Sed0005467 Sechium edule HOM05D003244 ORTHO05D003645 1.6e-34 151.0 361 39.1
MD17G1171000 Malus domestica HOM05D003244 ORTHO05D003645 2.1e-34 150.6 359 39.8
FvH4_6g34380 Fragaria vesca HOM05D003244 ORTHO05D003645 2.8e-34 150.2 354 39.3
Thhalv10020519m.g Eutrema salsugineum HOM05D003244 ORTHO05D003645 4.7e-34 149.4 284 48.6
FAN02G3680 Fragaria x ananassa HOM05D003244 ORTHO05D003645 6.2e-34 149.1 362 39.5
Manes.04G142700 Manihot esculenta HOM05D003244 ORTHO05D003645 8.1e-34 148.7 369 37.9
Haze_16008 Corylus avellana HOM05D003244 ORTHO05D003645 2.4e-33 147.1 377 37.4
FAN05G2950 Fragaria x ananassa HOM05D003244 ORTHO05D003645 3.1e-33 146.7 363 39.1
Gorai.010G234100 Gossypium raimondii HOM05D003244 ORTHO05D003645 4.0e-33 146.4 374 36.4
Gohir.A05G406400 Gossypium hirsutum HOM05D003244 ORTHO05D003645 5.8e-32 142.5 343 39.1
Dinv04023 Davidia involucrata HOM05D003244 ORTHO05D003645 6.4e-31 139.0 371 36.4
FAN09G4047 Fragaria x ananassa HOM05D003244 ORTHO05D003645 6.4e-31 139.0 362 37.6
Manes.11G022200 Manihot esculenta HOM05D003244 ORTHO05D003645 6.4e-31 139.0 372 37.6
AT3G14010 Arabidopsis thaliana HOM05D003244 ORTHO05D003645 2.4e-30 137.1 351 40.5
CiPaw.01G221000 Carya illinoinensis HOM05D003244 ORTHO05D003645 2.4e-30 137.1 380 35.0
BraA05t20663Z Brassica rapa HOM05D003244 ORTHO05D003645 3.2e-30 136.7 169 52.7
MELO3C025813.2 Cucumis melo HOM05D003244 ORTHO05D003645 3.2e-30 136.7 365 37.0
Thecc.06G117700 Theobroma cacao HOM05D003244 ORTHO05D003645 5.4e-30 136.0 359 36.2
AL3G26210 Arabidopsis lyrata HOM05D003244 ORTHO05D003645 2.1e-29 134.0 350 40.9
Duzib235G0409 Durio zibethinus HOM05D003244 ORTHO05D003645 3.5e-29 133.3 374 35.8
Potri.003G063000 Populus trichocarpa HOM05D003244 ORTHO05D003645 3.5e-29 133.3 369 35.5
Aqoxy7G01099 Aquilegia oxysepala HOM05D003244 ORTHO05D003645 4.6e-29 132.9 368 34.2
BcaNung04893 Brassica carinata HOM05D003244 ORTHO05D003645 6.0e-29 132.5 345 40.3
Lj3g0018176 Lotus japonicus HOM05D003244 ORTHO05D003645 1.0e-28 131.7 363 34.2
Sed0027854 Sechium edule HOM05D003244 ORTHO05D003645 1.3e-28 131.3 359 37.6
THA.LOC104810365 Tarenaya hassleriana HOM05D003244 ORTHO05D003645 1.7e-28 131.0 331 40.8
Atru.chr1.3900 Acer truncatum HOM05D003244 ORTHO05D003645 3.9e-28 129.8 358 36.3
TPR.G6601 Trifolium pratense HOM05D003244 ORTHO05D003645 3.9e-28 129.8 375 37.6
Nn8g38728 Nelumbo nucifera HOM05D003244 ORTHO05D003645 5.1e-28 129.4 373 35.9
TAR626G1385 Trochodendron aralioides HOM05D003244 ORTHO05D003645 8.7e-28 128.6 368 34.5
Cfa003546 Carpinus fangiana HOM05D003244 ORTHO05D003645 1.1e-27 128.3 372 33.9
Hma1.2p1_0291F.1_g115240 Hydrangea macrophylla HOM05D003244 ORTHO05D003645 3.3e-27 126.7 367 33.8
Phvul.010G133101 Phaseolus vulgaris HOM05D003244 ORTHO05D003645 1.2e-26 124.8 350 35.1
Sp3g12260 Schrenkiella parvula HOM05D003244 ORTHO05D003645 1.6e-26 124.4 344 39.8
CsaV3_3G043570 Cucumis sativus L. HOM05D003244 ORTHO05D003645 2.1e-26 124.0 369 36.0
TWI31G0664 Tripterygium wilfordii HOM05D003244 ORTHO05D003645 2.8e-26 123.6 388 35.1
BcaB04g18816 Brassica carinata HOM05D003244 ORTHO05D003645 3.6e-26 123.2 343 38.8
ClCG07G013970 Citrullus lanatus HOM05D003244 ORTHO05D003645 3.6e-26 123.2 366 33.6
Sabra01G0140200 Salix brachista HOM05D003244 ORTHO05D003645 6.2e-26 122.5 371 33.7
Gohir.A06G192700 Gossypium hirsutum HOM05D003244 ORTHO05D003645 1.4e-25 121.3 374 33.4
Lj5C39G2 Lonicera japonica HOM05D003244 ORTHO05D003645 1.4e-25 121.3 356 34.3
Lalb_Chr24g0396621 Lupinus albus HOM05D003244 ORTHO05D003645 1.4e-25 121.3 365 35.1
TAR383G0203 Trochodendron aralioides HOM05D003244 ORTHO05D003645 1.8e-25 120.9 373 36.7
Lj9A522G71 Lonicera japonica HOM05D003244 ORTHO05D003645 3.1e-25 120.2 378 35.2
AUR62016380 Chenopodium quinoa HOM05D003244 ORTHO05D003645 6.9e-25 119.0 353 33.7
TPR.G16437 Trifolium pratense HOM05D003244 ORTHO05D003645 9.0e-25 118.6 367 33.2
Gohir.D04G009200 Gossypium hirsutum HOM05D003244 ORTHO05D003645 2.0e-24 117.5 368 35.6
Gorai.012G011100 Gossypium raimondii HOM05D003244 ORTHO05D003645 2.0e-24 117.5 368 35.6
Prupe.7G067500 Prunus persica HOM05D003244 ORTHO05D003645 2.0e-24 117.5 365 34.5
Ca_05015_v3 Cicer arietinum L. HOM05D003244 ORTHO05D003645 3.4e-24 116.7 364 34.6
Carub.0003s1359 Capsella rubella HOM05D003244 ORTHO05D003645 5.8e-24 115.9 308 35.1
Actinidia39089 Actinidia chinensis HOM05D003244 ORTHO05D003645 9.9e-24 115.2 381 34.9
BcaC01g03960 Brassica carinata HOM05D003244 ORTHO05D003645 1.7e-23 114.4 339 35.1
BolC3t16936H Brassica oleracea HOM05D003244 ORTHO05D003645 1.7e-23 114.4 339 35.1
Ca_01233_v3 Cicer arietinum L. HOM05D003244 ORTHO05D003645 1.7e-23 114.4 370 35.7
Eucgr.F03170 Eucalyptus grandis HOM05D003244 ORTHO05D003645 1.7e-23 114.4 369 33.1
Gohir.A10G052600 Gossypium hirsutum HOM05D003244 ORTHO05D003645 1.7e-23 114.4 338 34.0
BolC1t05006H Brassica oleracea HOM05D003244 ORTHO05D003645 2.2e-23 114.0 342 38.0
Gohir.D06G200600 Gossypium hirsutum HOM05D003244 ORTHO05D003645 2.2e-23 114.0 374 33.7
Lalb_Chr22g0352001 Lupinus albus HOM05D003244 ORTHO05D003645 2.2e-23 114.0 342 36.0
Gorai.011G057800 Gossypium raimondii HOM05D003244 ORTHO05D003645 3.8e-23 113.2 313 35.1
C01p50550 Brassica napus HOM05D003244 ORTHO05D003645 4.9e-23 112.8 342 37.7
Glyma.16G005700 Glycine max HOM05D003244 ORTHO05D003645 4.9e-23 112.8 367 34.1
PSO063G5495 Papaver somniferum HOM05D003244 ORTHO05D003645 4.9e-23 112.8 338 34.9
TWI79G0895 Tripterygium wilfordii HOM05D003244 ORTHO05D003645 4.9e-23 112.8 386 33.4
Migut.D00945 Erythranthe guttata HOM05D003244 ORTHO05D003645 1.1e-22 111.7 368 34.8
DCAR_007631 Daucus carota HOM05D003244 ORTHO05D003645 1.9e-22 110.9 336 36.3
Medtr8g019560 Medicago truncatula HOM05D003244 ORTHO05D003645 1.9e-22 110.9 370 33.8
MSTRG.9512 Avicennia marina HOM05D003244 ORTHO05D003645 3.2e-22 110.2 350 34.0
CSS0016093 Camellia sinensis var. sinensis HOM05D003244 ORTHO05D003645 3.2e-22 110.2 374 34.2
Glyma.07G036300 Glycine max HOM05D003244 ORTHO05D003645 3.2e-22 110.2 361 33.5
BcaNung06450 Brassica carinata HOM05D003244 ORTHO05D003645 4.2e-22 109.8 311 38.9
Nn6g35582 Nelumbo nucifera HOM05D003244 ORTHO05D003645 4.2e-22 109.8 373 33.5
DCAR_016132 Daucus carota HOM05D003244 ORTHO05D003645 5.4e-22 109.4 357 33.1
C03p46710 Brassica napus HOM05D003244 ORTHO05D003645 9.3e-22 108.6 339 34.2
Psat4g183560 Pisum sativum HOM05D003244 ORTHO05D003645 3.5e-21 106.7 356 32.3
Sc10g0005710 Simmondsia chinensis HOM05D003244 ORTHO05D003645 3.5e-21 106.7 310 34.5
A01p39610 Brassica napus HOM05D003244 ORTHO05D003645 4.6e-21 106.3 343 36.7
BraA01t04001Z Brassica rapa HOM05D003244 ORTHO05D003645 4.6e-21 106.3 343 36.7
Lj3g0017349 Lotus japonicus HOM05D003244 ORTHO05D003645 1.7e-20 104.4 374 34.8
Duzib192G0343 Durio zibethinus HOM05D003244 ORTHO05D003645 3.0e-20 103.6 388 34.0
SalBow6G2321 Salvia bowleyana HOM05D003244 ORTHO05D003645 5.1e-20 102.8 357 33.1
ECA234G2908 Erigeron canadensis HOM05D003244 ORTHO05D003645 8.7e-20 102.1 359 34.0
Peaxi162Scf00038g01820 Petunia axillaris HOM05D003244 ORTHO05D003645 1.9e-19 100.9 372 32.0
Nitab4.5_0002072g0120 Nicotiana tabacum HOM05D003244 ORTHO05D003645 2.5e-19 100.5 350 29.1
BraA03t13007Z Brassica rapa HOM05D003244 ORTHO05D003645 3.3e-19 100.1 342 33.6
FAN14G0986 Fragaria x ananassa HOM05D003244 ORTHO05D003645 4.3e-19 99.8 362 33.1
A03p38600 Brassica napus HOM05D003244 ORTHO05D003645 5.6e-19 99.4 347 33.1
HanXRQChr09g0276711 Helianthus annuus HOM05D003244 ORTHO05D003645 5.6e-19 99.4 330 31.8
Nitab4.5_0002879g0040 Nicotiana tabacum HOM05D003244 ORTHO05D003645 1.3e-18 98.2 353 29.5
COL.COLO4_30782 Corchorus olitorius HOM05D003244 ORTHO05D003645 2.1e-18 97.4 352 31.0
CSS0012837 Camellia sinensis var. sinensis HOM05D003244 ORTHO05D003645 1.1e-17 95.1 374 32.4
Potri.001G171100 Populus trichocarpa HOM05D003244 ORTHO05D003645 1.1e-17 95.1 369 30.9
Ciclev10025086m.g Citrus clementina HOM05D003244 ORTHO05D003645 1.5e-16 91.3 362 30.1
MD09G1186100 Malus domestica HOM05D003244 ORTHO05D003645 1.5e-16 91.3 358 34.1
Solyc03g121950.3 Solanum lycopersicum HOM05D003244 ORTHO05D003645 2.0e-16 90.9 371 30.7
CiPaw.02G137000 Carya illinoinensis HOM05D003244 ORTHO05D003645 3.4e-16 90.1 390 31.5
Sopen03g040770 Solanum pennellii HOM05D003244 ORTHO05D003645 5.8e-16 89.4 372 29.8
Oeu058715.1 Olea europaea HOM05D003244 ORTHO05D003645 9.9e-16 88.6 380 30.5
vmacro22213 Vaccinium macrocarpon HOM05D003244 ORTHO05D003645 4.9e-15 86.3 401 29.7
Os02g0480900 Oryza sativa ssp. japonica HOM05D003244 ORTHO05D003645 8.4e-15 85.5 342 34.2
EL10Ac9g21941 Beta vulgaris HOM05D003244 ORTHO05D003645 1.1e-14 85.1 357 31.1
Glyma.13G346900 Glycine max HOM05D003244 ORTHO05D003645 1.4e-14 84.7 381 30.7
Hund14580 Selenicereus undatus HOM05D003244 ORTHO05D003645 1.9e-14 84.3 146 43.2
CDE06G0734 Ceratophyllum demersum HOM05D003244 ORTHO05D003645 2.4e-14 84.0 339 30.1
Hma1.2p1_0496F.1_g166130 Hydrangea macrophylla HOM05D003244 ORTHO05D003645 2.4e-14 84.0 364 31.3
Actinidia32174 Actinidia chinensis HOM05D003244 ORTHO05D003645 3.2e-14 83.6 377 31.3
arahy.Tifrunner.gnm1.ann1.S9YVIH Arachis hypogaea HOM05D003244 ORTHO05D003645 3.2e-14 83.6 370 30.3
CAN.G862.25 Capsicum annuum HOM05D003244 ORTHO05D003645 3.2e-14 83.6 346 28.3
BcaB06g25410 Brassica carinata HOM05D003244 ORTHO05D003645 5.4e-14 82.8 210 40.0
SalBow7G3930 Salvia bowleyana HOM05D003244 ORTHO05D003645 9.3e-14 82.0 346 31.2
arahy.Tifrunner.gnm1.ann1.62L32R Arachis hypogaea HOM05D003244 ORTHO05D003645 1.6e-13 81.3 368 29.6
PSO421G0240 Papaver somniferum HOM05D003244 ORTHO05D003645 2.7e-13 80.5 343 32.9
Phvul.005G156000 Phaseolus vulgaris HOM05D003244 ORTHO05D003645 6.0e-13 79.3 364 30.8
Lsat_1_v5_gn_5_135681 Lactuca sativa HOM05D003244 ORTHO05D003645 7.9e-13 79.0 334 31.1
GSVIVG01016786001 Vitis vinifera HOM05D003244 ORTHO05D003645 2.3e-12 77.4 385 29.1
Ca_01232_v3 Cicer arietinum L. HOM05D003244 ORTHO05D003645 3.0e-12 77.0 197 39.1
Glyma.15G027500 Glycine max HOM05D003244 ORTHO05D003645 3.9e-12 76.6 378 29.6
Rhsim08G0237100 Rhododendron simsii HOM05D003244 ORTHO05D003645 3.9e-12 76.6 427 28.6
unitig_8.g3564 Utricularia gibba HOM05D003244 ORTHO05D003645 5.1e-12 76.3 142 43.0
CDE07G0771 Ceratophyllum demersum HOM05D003244 ORTHO05D003645 6.7e-12 75.9 341 29.0
Zm00001eb241130 Zea mays HOM05D003244 ORTHO05D003645 1.1e-11 75.1 167 41.9
Zm00001eb202950 Zea mays HOM05D003244 ORTHO05D003645 4.8e-10 69.7 161 44.1
HanXRQChr10g0312291 Helianthus annuus HOM05D003244 ORTHO05D003645 6.2e-10 69.3 339 29.8
Sabra03G0036700 Salix brachista HOM05D003244 ORTHO05D003645 6.2e-10 69.3 368 29.1
AUR62011561 Chenopodium quinoa HOM05D003244 ORTHO05D003645 1.1e-09 68.6 351 29.3
PGR102G1386 Punica granatum HOM05D003244 ORTHO05D003645 1.1e-09 68.6 381 28.3
Actinidia28160 Actinidia chinensis HOM05D003244 ORTHO05D003645 1.8e-09 67.8 364 30.2
Ah.01g020820 Amaranthus hybridus HOM05D003244 ORTHO05D003645 2.4e-09 67.4 347 28.5
Lalb_Chr14g0372621 Lupinus albus HOM05D003244 ORTHO05D003645 2.4e-09 67.4 355 29.6
MSTRG.4785 Avicennia marina HOM05D003244 ORTHO05D003645 3.1e-09 67.0 339 28.9
THA.LOC104822779 Tarenaya hassleriana HOM05D003244 ORTHO05D003645 3.1e-09 67.0 65 55.4
Nitab4.5_0011707g0020 Nicotiana tabacum HOM05D003244 ORTHO05D003645 4.0e-09 66.6 356 27.0
Solyc06g062860.4 Solanum lycopersicum HOM05D003244 ORTHO05D003645 5.3e-09 66.2 353 28.0
Sopen06g022320 Solanum pennellii HOM05D003244 ORTHO05D003645 5.3e-09 66.2 353 28.3
arahy.Tifrunner.gnm1.ann1.THNB81 Arachis hypogaea HOM05D003244 ORTHO05D003645 1.2e-08 65.1 370 27.8
Gohir.D10G054400 Gossypium hirsutum HOM05D003244 ORTHO05D003645 3.4e-08 63.5 202 32.7
VMungo0331G0221 Vigna mungo HOM05D001762 ORTHO05D001774 3.4e-08 63.5 374 27.3
Hund06581 Selenicereus undatus HOM05D003244 ORTHO05D003645 4.9e-07 59.7 335 28.7
VMungo1080G0053 Vigna mungo HOM05D003244 ORTHO05D003645 6.4e-07 59.3 380 26.8
HanXRQChr12g0360461 Helianthus annuus HOM05D003244 ORTHO05D003645 1.1e-06 58.5 335 29.3
BcaB07g33253 Brassica carinata HOM05D003244 ORTHO05D003645 1.4e-06 58.2 28 89.3
Lsat_1_v5_gn_4_93821 Lactuca sativa HOM05D003244 ORTHO05D003645 1.4e-06 58.2 332 27.4
Rhsim12G0208800 Rhododendron simsii HOM05D003244 ORTHO05D003645 2.5e-06 57.4 146 37.7
HPP92_023800 Vanilla planifolia HOM05D003244 ORTHO05D003645 2.5e-06 57.4 166 39.2
PGSC0003DMG400004888 Solanum tuberosum HOM05D003244 ORTHO05D003645 3.2e-06 57.0 82 43.9
Peaxi162Scf00207g01431 Petunia axillaris HOM05D003244 ORTHO05D003645 7.1e-06 55.8 385 27.5


User provided reference genes

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