Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35967H Brassica oleracea HOM05D000042 ORTHO05D020036 1.4e-64 249.6 138 100.0
BraA06t23345Z Brassica rapa HOM05D000042 ORTHO05D020036 2.9e-46 188.7 126 84.1
BcaC08g43503 Brassica carinata HOM05D000042 ORTHO05D020036 4.8e-41 171.4 116 85.3
A06p01180 Brassica napus HOM05D000042 ORTHO05D020036 7.7e-39 164.1 114 82.5
C06p08880 Brassica napus HOM05D000042 ORTHO05D020036 2.7e-36 155.6 132 71.2
C08p32790 Brassica napus HOM05D000042 ORTHO05D000028 1.8e-35 152.9 167 61.1
BolC8t50890H Brassica oleracea HOM05D000042 ORTHO05D000028 1.8e-35 152.9 167 61.1
A09p50280 Brassica napus HOM05D000042 ORTHO05D000028 4.4e-34 148.3 166 60.8
BraA09t40479Z Brassica rapa HOM05D000042 ORTHO05D000028 4.4e-34 148.3 166 60.8
Sp5g05210 Schrenkiella parvula HOM05D000042 ORTHO05D000028 1.3e-33 146.7 132 69.7
BcaB02g07609 Brassica carinata HOM05D000042 ORTHO05D000028 7.0e-32 141.0 170 58.8
A07p23370 Brassica napus HOM05D000042 ORTHO05D000028 3.5e-31 138.7 169 59.2
BraA07t30002Z Brassica rapa HOM05D000042 ORTHO05D000028 3.5e-31 138.7 169 59.2
BraA04t16037Z Brassica rapa HOM05D000042 ORTHO05D000028 1.0e-30 137.1 170 57.6
Thhalv10006251m.g Eutrema salsugineum HOM05D000042 ORTHO05D000028 2.9e-30 135.6 135 65.2
BcaC02g09933 Brassica carinata HOM05D000042 ORTHO05D000028 6.6e-30 134.4 174 56.9
C04p35030 Brassica napus HOM05D000042 ORTHO05D000028 6.6e-30 134.4 174 56.9
BolC4t25060H Brassica oleracea HOM05D000042 ORTHO05D000028 6.6e-30 134.4 174 56.9
C06p24440 Brassica napus HOM05D000042 ORTHO05D000028 4.2e-29 131.7 169 56.8
BolC6t37591H Brassica oleracea HOM05D000042 ORTHO05D000028 4.2e-29 131.7 169 56.8
AT3G57390 Arabidopsis thaliana HOM05D000042 ORTHO05D000028 9.5e-29 130.6 172 55.8
BcaC08g44836 Brassica carinata HOM05D000042 ORTHO05D000028 4.7e-28 128.3 169 56.2
BcaC07g40392 Brassica carinata HOM05D000042 ORTHO05D000028 6.1e-28 127.9 192 50.5
BcaB02g08318 Brassica carinata HOM05D000042 ORTHO05D000028 1.0e-27 127.1 169 55.6
Carub.0005s2423 Capsella rubella HOM05D000042 ORTHO05D000028 1.0e-27 127.1 144 61.1
C06p08840 Brassica napus HOM05D000042 ORTHO05D020036 1.8e-27 126.3 137 62.8
AL5G38920 Arabidopsis lyrata HOM05D000042 ORTHO05D000028 2.3e-27 125.9 170 52.9
A04p03160 Brassica napus HOM05D000042 ORTHO05D000028 1.5e-26 123.2 194 49.5
Aa31LG10G12220 Aethionema arabicum HOM05D000042 ORTHO05D000028 7.5e-26 120.9 166 51.8
THA.LOC104824433 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 1.3e-22 110.2 182 40.7
THA.LOC104817587 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 2.8e-20 102.4 133 48.9
BolC6t35962H Brassica oleracea HOM05D000042 ORTHO05D020036 1.5e-18 96.7 66 84.8
THA.LOC104804844 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 3.5e-15 85.5 133 43.6
BcaB05g23180 Brassica carinata HOM05D000042 ORTHO05D000028 1.0e-14 84.0 65 75.4
Cfa016796 Carpinus fangiana HOM05D000042 ORTHO05D000028 2.1e-12 76.3 159 37.7
Ciclev10005698m.g Citrus clementina HOM05D000042 ORTHO05D000028 2.1e-12 76.3 127 40.2
Atru.chr1.1136 Acer truncatum HOM05D000042 ORTHO05D000028 3.6e-12 75.5 157 40.1
Dinv39623 Davidia involucrata HOM05D000042 ORTHO05D000028 6.2e-12 74.7 150 40.0
Duzib128G0515 Durio zibethinus HOM05D000042 ORTHO05D000028 8.1e-12 74.3 79 50.6
Duzib093G0336 Durio zibethinus HOM05D000042 ORTHO05D000028 1.4e-11 73.6 130 43.1
Cfa016798 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.8e-11 73.2 113 41.6
Gohir.D11G329600 Gossypium hirsutum HOM05D000042 ORTHO05D000028 4.0e-11 72.0 144 39.6
Gorai.007G360800 Gossypium raimondii HOM05D000042 ORTHO05D000028 4.0e-11 72.0 144 39.6
CSS0023376 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 5.2e-11 71.6 88 48.9
Lju124C44T12 Lonicera japonica HOM05D000042 ORTHO05D000028 8.9e-11 70.9 147 38.1
Ah.10g038550 Amaranthus hybridus HOM05D000042 ORTHO05D000028 1.2e-10 70.5 125 41.6
Nn2g15187 Nelumbo nucifera HOM05D000042 ORTHO05D000028 1.2e-10 70.5 80 51.2
MSTRG.6418 Avicennia marina HOM05D000042 ORTHO05D000028 1.5e-10 70.1 114 39.5
PGR004G1335 Punica granatum HOM05D000042 ORTHO05D000028 1.5e-10 70.1 95 43.2
Gohir.D11G330500 Gossypium hirsutum HOM05D000042 ORTHO05D000028 2.0e-10 69.7 85 49.4
TAR636G0038 Trochodendron aralioides HOM05D000042 ORTHO05D000028 9.8e-10 67.4 81 48.1
MSTRG.19853 Avicennia marina HOM05D000042 ORTHO05D000028 1.3e-09 67.0 114 38.6
Thecc.05G150100 Theobroma cacao HOM05D000042 ORTHO05D000028 1.3e-09 67.0 148 36.5
CiPaw.09G039300 Carya illinoinensis HOM05D000042 ORTHO05D000028 2.2e-09 66.2 156 35.9
Migut.O00954 Erythranthe guttata HOM05D027860 ORTHO05D000028 2.2e-09 66.2 111 37.8
EL10Ac2g04380 Beta vulgaris HOM05D000042 ORTHO05D000028 3.7e-09 65.5 93 44.1
SGA_v2.0_scaffold69G23122 Striga asiatica HOM05D000042 ORTHO05D000028 3.7e-09 65.5 133 36.1
TWI77G0779 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 6.4e-09 64.7 156 39.1
Lalb_Chr19g0140231 Lupinus albus HOM05D000042 ORTHO05D000028 8.3e-09 64.3 111 39.6
Aqoxy1G00318 Aquilegia oxysepala HOM05D000042 ORTHO05D000028 1.1e-08 63.9 85 44.7
HanXRQChr10g0299591 Helianthus annuus HOM05D000042 ORTHO05D000028 1.1e-08 63.9 90 37.8
Cpa.g.c37200 Carica papaya HOM05D000042 ORTHO05D000028 1.4e-08 63.5 133 36.8
Lj5g0007892 Lotus japonicus HOM05D000042 ORTHO05D000028 2.4e-08 62.8 113 38.1
Lalb_Chr21g0316521 Lupinus albus HOM05D000042 ORTHO05D000028 2.4e-08 62.8 78 46.2
CsaV3_4G028880 Cucumis sativus L. HOM05D000042 ORTHO05D000028 3.2e-08 62.4 85 41.2
GSVIVG01033253001 Vitis vinifera HOM05D000042 ORTHO05D000028 3.2e-08 62.4 76 46.1
Glyma.02G185500 Glycine max HOM05D000042 ORTHO05D000028 4.1e-08 62.0 84 40.5
Manes.09G019300 Manihot esculenta HOM05D000042 ORTHO05D000028 4.1e-08 62.0 114 36.8
VMungo0720G3184 Vigna mungo HOM05D000042 ORTHO05D000028 4.1e-08 62.0 122 36.9
Lj3g0001475 Lotus japonicus HOM05D000042 ORTHO05D000028 5.4e-08 61.6 104 37.5
Cc06_g17700 Coffea canephora HOM05D000042 ORTHO05D000028 7.1e-08 61.2 156 35.3
Ah.16g100680 Amaranthus hybridus HOM05D000042 ORTHO05D000028 9.2e-08 60.8 92 42.4
Lsat_1_v5_gn_9_31261 Lactuca sativa HOM05D000042 ORTHO05D000028 1.2e-07 60.5 91 34.1
MD00G1106300 Malus domestica HOM05D000042 ORTHO05D000028 1.2e-07 60.5 168 35.1
Psat6g113320 Pisum sativum HOM05D000042 ORTHO05D000028 1.2e-07 60.5 119 37.0
Sabra09G0040800 Salix brachista HOM05D000042 ORTHO05D000028 1.2e-07 60.5 74 45.9
THA.LOC104826694 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 1.2e-07 60.5 113 38.1
CSS0039724 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 1.6e-07 60.1 87 43.7
MBI17_g18123_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000028 1.6e-07 60.1 114 39.5
PGR031G1523 Punica granatum HOM05D000042 ORTHO05D000028 1.6e-07 60.1 88 42.0
Solyc01g087990.3 Solanum lycopersicum HOM05D000042 ORTHO05D000028 1.6e-07 60.1 97 35.1
TPR.G8340 Trifolium pratense HOM05D000042 ORTHO05D000028 2.1e-07 59.7 90 36.7
Duzib106G1526 Durio zibethinus HOM05D000042 ORTHO05D000028 2.7e-07 59.3 117 38.5
Cfa010822 Carpinus fangiana HOM05D000042 ORTHO05D000028 3.5e-07 58.9 80 41.2
COL.COLO4_20029 Corchorus olitorius HOM05D000042 ORTHO05D000028 3.5e-07 58.9 111 37.8
ECA247G0313 Erigeron canadensis HOM05D000042 ORTHO05D000028 3.5e-07 58.9 72 40.3
QL04p010447 Quercus lobata HOM05D000042 ORTHO05D000028 3.5e-07 58.9 127 36.2
Sabra06G0034000 Salix brachista HOM05D000042 ORTHO05D000028 3.5e-07 58.9 162 35.2
Medtr1g053070 Medicago truncatula HOM05D000042 ORTHO05D000028 4.6e-07 58.5 81 40.7
Peaxi162Scf00130g00423 Petunia axillaris HOM05D000042 ORTHO05D000028 4.6e-07 58.5 114 36.8
SGA_v2.0_scaffold105G30399 Striga asiatica HOM05D027860 ORTHO05D000028 4.6e-07 58.5 130 33.1
Actinidia23254 Actinidia chinensis HOM05D000042 ORTHO05D000028 7.8e-07 57.8 112 35.7
Potri.006G048700 Populus trichocarpa HOM05D000042 ORTHO05D000028 7.8e-07 57.8 162 35.2
Ca_27021_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000028 1.0e-06 57.4 86 39.5
AUR62023102 Chenopodium quinoa HOM05D000042 ORTHO05D000028 1.3e-06 57.0 93 41.9
Migut.N01802 Erythranthe guttata HOM05D000042 ORTHO05D000028 1.3e-06 57.0 111 36.9
PSO339G2047 Papaver somniferum HOM05D000042 ORTHO05D000028 1.3e-06 57.0 90 37.8
PSO384G4921 Papaver somniferum HOM05D000042 ORTHO05D000028 1.3e-06 57.0 90 37.8
SalBow6G2376 Salvia bowleyana HOM05D027860 ORTHO05D000028 1.3e-06 57.0 80 38.8
AUR62009424 Chenopodium quinoa HOM05D000042 ORTHO05D000028 1.7e-06 56.6 93 41.9
Eucgr.G03284 Eucalyptus grandis HOM05D000042 ORTHO05D000028 1.7e-06 56.6 163 35.6
MD07G1022500 Malus domestica HOM05D000042 ORTHO05D000028 1.7e-06 56.6 80 41.2
Phvul.007G251600 Phaseolus vulgaris HOM05D000042 ORTHO05D000028 1.7e-06 56.6 118 36.4
Prupe.7G055900 Prunus persica HOM05D000042 ORTHO05D000028 1.7e-06 56.6 117 39.3
Atru.chr11.2528 Acer truncatum HOM05D000042 ORTHO05D000028 2.3e-06 56.2 82 40.2
MSTRG.5045 Avicennia marina HOM05D000042 ORTHO05D000028 2.3e-06 56.2 110 32.7
CANSAT80G1550 Cannabis sativa HOM05D000042 ORTHO05D000028 2.3e-06 56.2 130 36.2
Ca_26441_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000028 2.3e-06 56.2 112 34.8
TWI09G1037 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 2.3e-06 56.2 80 43.8
Manes.10G135400 Manihot esculenta HOM05D000042 ORTHO05D000028 3.0e-06 55.8 80 40.0
Sed0024257 Sechium edule HOM05D000042 ORTHO05D000028 3.0e-06 55.8 151 31.8
arahy.Tifrunner.gnm1.ann1.BJW67H Arachis hypogaea HOM05D000042 ORTHO05D000028 3.9e-06 55.5 76 42.1
Carub.0006s1197 Capsella rubella HOM05D000042 ORTHO05D000028 3.9e-06 55.5 106 38.7
Glyma.04G142500 Glycine max HOM05D000042 ORTHO05D000028 3.9e-06 55.5 82 45.1
Medtr0003s0590 Medicago truncatula HOM05D000042 ORTHO05D000028 6.6e-06 54.7 80 40.0
AT5G13790 Arabidopsis thaliana HOM05D000042 ORTHO05D000028 8.6e-06 54.3 109 33.9
FAN01G3037 Fragaria x ananassa HOM05D000042 ORTHO05D000028 8.6e-06 54.3 86 37.2


User provided reference genes

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