Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35638H Brassica oleracea HOM05D003502 ORTHO05D010567 9.4e-30 132.9 68 100.0
C06p05280 Brassica napus HOM05D008752 ORTHO05D010567 6.3e-26 120.2 86 77.9
BcaC08g43206 Brassica carinata HOM05D003502 ORTHO05D010567 1.8e-25 118.6 86 77.9
BcaC01g01220 Brassica carinata HOM05D003502 ORTHO05D004250 3.5e-24 114.4 86 72.1
A08p03270 Brassica napus HOM05D003502 ORTHO05D004250 3.5e-24 114.4 86 72.1
C03p89540 Brassica napus HOM05D003502 ORTHO05D004250 3.5e-24 114.4 86 72.1
BolC3t21268H Brassica oleracea HOM05D003502 ORTHO05D004250 3.5e-24 114.4 86 72.1
BraA08t32360Z Brassica rapa HOM05D003502 ORTHO05D004250 3.5e-24 114.4 86 72.1
Sp1g37070 Schrenkiella parvula HOM05D003502 ORTHO05D004250 1.0e-23 112.8 86 72.1
Thhalv10011182m.g Eutrema salsugineum HOM05D003502 ORTHO05D004250 2.2e-23 111.7 84 70.2
THA.LOC104811354 Tarenaya hassleriana HOM05D003502 ORTHO05D004250 2.2e-23 111.7 86 69.8
BcaB04g17262 Brassica carinata HOM05D003502 ORTHO05D004250 6.5e-23 110.2 83 71.1
AL1G57830 Arabidopsis lyrata HOM05D003502 ORTHO05D004250 8.5e-23 109.8 85 68.2
AT1G50240 Arabidopsis thaliana HOM05D003502 ORTHO05D004250 3.2e-22 107.8 86 67.4
Carub.0001s3934 Capsella rubella HOM05D003502 ORTHO05D004250 7.2e-22 106.7 86 67.4
CARHR040300 Cardamine hirsuta HOM05D003502 ORTHO05D004250 2.7e-21 104.8 82 68.3
Aa31LG10G3970 Aethionema arabicum HOM05D003502 ORTHO05D004250 8.0e-21 103.2 82 67.1
BcaC08g43210 Brassica carinata HOM05D003502 ORTHO05D010567 6.8e-20 100.1 60 85.0
A06p03270 Brassica napus HOM05D008752 ORTHO05D010567 6.8e-20 100.1 60 85.0
BolC6t35637H Brassica oleracea HOM05D008752 ORTHO05D010567 6.8e-20 100.1 60 85.0
BraA06t23538Z Brassica rapa HOM05D008752 ORTHO05D010567 6.8e-20 100.1 60 85.0
C06p05300 Brassica napus HOM05D003502 ORTHO05D010567 7.5e-19 96.7 59 83.1
BolC5t32137H Brassica oleracea HOM05D003502 ORTHO05D004250 4.8e-18 94.0 86 60.5
C05p34020 Brassica napus HOM05D003502 ORTHO05D004250 1.4e-17 92.4 86 59.3
BcaC05g27448 Brassica carinata HOM05D003502 ORTHO05D004250 9.1e-17 89.7 84 59.5
CiPaw.01G206800 Carya illinoinensis HOM05D003502 ORTHO05D004250 5.5e-14 80.5 81 56.8
ClCG01G005070 Citrullus lanatus HOM05D003502 ORTHO05D004250 5.5e-14 80.5 81 58.0
MELO3C005424.2 Cucumis melo HOM05D003502 ORTHO05D004250 5.5e-14 80.5 81 59.3
CsaV3_5G005350 Cucumis sativus L. HOM05D003502 ORTHO05D004250 1.2e-13 79.3 81 58.0
Ciclev10000035m.g Citrus clementina HOM05D003502 ORTHO05D004250 2.7e-13 78.2 82 53.7
Lj6g0010845 Lotus japonicus HOM05D003502 ORTHO05D004250 2.7e-13 78.2 81 53.1
Lj3C889G13 Lonicera japonica HOM05D003502 ORTHO05D004250 3.6e-13 77.8 80 56.2
Manes.08G163900 Manihot esculenta HOM05D003502 ORTHO05D004250 6.1e-13 77.0 81 54.3
Sopen03g027640 Solanum pennellii HOM05D003502 ORTHO05D004250 6.1e-13 77.0 81 55.6
PGSC0003DMG400000538 Solanum tuberosum HOM05D003502 ORTHO05D004250 6.1e-13 77.0 81 55.6
Atru.chr8.760 Acer truncatum HOM05D003502 ORTHO05D004250 8.0e-13 76.6 81 54.3
Cfa013318 Carpinus fangiana HOM05D003502 ORTHO05D004250 8.0e-13 76.6 81 55.6
Dinv29168 Davidia involucrata HOM05D003502 ORTHO05D004250 8.0e-13 76.6 80 56.2
Prupe.2G324200 Prunus persica HOM05D003502 ORTHO05D004250 8.0e-13 76.6 81 54.3
Sed0005246 Sechium edule HOM05D003502 ORTHO05D004250 8.0e-13 76.6 81 56.8
QL06p046981 Quercus lobata HOM05D003502 ORTHO05D004250 1.0e-12 76.3 81 54.3
Nitab4.5_0000021g0390 Nicotiana tabacum HOM05D003502 ORTHO05D004250 1.4e-12 75.9 81 54.3
Nitab4.5_0005081g0060 Nicotiana tabacum HOM05D003502 ORTHO05D004250 1.4e-12 75.9 81 54.3
Sed0020646 Sechium edule HOM05D003502 ORTHO05D004250 1.8e-12 75.5 81 55.6
TWI60G0235 Tripterygium wilfordii HOM05D003502 ORTHO05D004250 1.8e-12 75.5 81 53.1
Haze_16219 Corylus avellana HOM05D003502 ORTHO05D004250 2.3e-12 75.1 81 54.3
GSVIVG01024439001 Vitis vinifera HOM05D003502 ORTHO05D004250 2.3e-12 75.1 81 54.3
Eucgr.A02961 Eucalyptus grandis HOM05D003502 ORTHO05D004250 4.0e-12 74.3 81 54.3
CSS0027375 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 5.2e-12 73.9 80 52.5
CSS0032069 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 5.2e-12 73.9 80 52.5
CANSAT56G1789 Cannabis sativa HOM05D003502 ORTHO05D004250 5.2e-12 73.9 59 64.4
MD07G1306200 Malus domestica HOM05D003502 ORTHO05D004250 5.2e-12 73.9 82 54.9
Rhsim03G0220800 Rhododendron simsii HOM05D003502 ORTHO05D004250 5.2e-12 73.9 80 52.5
Lalb_Chr01g0010621 Lupinus albus HOM05D003502 ORTHO05D004250 6.8e-12 73.6 81 50.6
Potri.019G052500 Populus trichocarpa HOM05D003502 ORTHO05D004250 6.8e-12 73.6 81 53.1
Prupe.3G137600 Prunus persica HOM05D003502 ORTHO05D004250 6.8e-12 73.6 59 64.4
RcHm_v2.0_Chr1g0383891 Rosa chinensis HOM05D003502 ORTHO05D004250 6.8e-12 73.6 81 53.1
Sabra19G0056000 Salix brachista HOM05D003502 ORTHO05D004250 6.8e-12 73.6 81 53.1
Lsat_1_v5_gn_6_108521 Lactuca sativa HOM05D003502 ORTHO05D004250 8.8e-12 73.2 80 53.8
TAR624G1438 Trochodendron aralioides HOM05D003502 ORTHO05D004250 8.8e-12 73.2 81 51.9
CAN.G303.73 Capsicum annuum HOM05D003502 ORTHO05D004250 1.2e-11 72.8 81 54.3
Glyma.20G069700 Glycine max HOM05D003502 ORTHO05D004250 1.5e-11 72.4 81 49.4
COL.COLO4_32890 Corchorus olitorius HOM05D003502 ORTHO05D004250 2.0e-11 72.0 59 64.4
Phvul.007G241300 Phaseolus vulgaris HOM05D003502 ORTHO05D004250 2.0e-11 72.0 81 49.4
VMungo0720G2129 Vigna mungo HOM05D003502 ORTHO05D004250 2.0e-11 72.0 81 49.4
Actinidia21879 Actinidia chinensis HOM05D003502 ORTHO05D004250 2.6e-11 71.6 80 51.2
Actinidia38803 Actinidia chinensis HOM05D003502 ORTHO05D004250 2.6e-11 71.6 60 61.7
FvH4_7g33760 Fragaria vesca HOM05D003502 ORTHO05D004250 2.6e-11 71.6 81 51.9
FAN01G2009 Fragaria x ananassa HOM05D000067 ORTHO05D004250 2.6e-11 71.6 81 51.9
Peaxi162Scf00745g00858 Petunia axillaris HOM05D003502 ORTHO05D010567 2.6e-11 71.6 81 50.6
MD01G1234000 Malus domestica HOM05D003502 ORTHO05D004250 3.4e-11 71.2 82 53.7
PSO339G0895 Papaver somniferum HOM05D003502 ORTHO05D004250 3.4e-11 71.2 59 61.0
PSO339G1860 Papaver somniferum HOM05D003502 ORTHO05D010567 3.4e-11 71.2 59 61.0
PSO384G3919 Papaver somniferum HOM05D003502 ORTHO05D004250 3.4e-11 71.2 59 61.0
PSO419G0001 Papaver somniferum HOM05D003502 ORTHO05D004250 3.4e-11 71.2 59 61.0
FAN03G0354 Fragaria x ananassa HOM05D003502 ORTHO05D004250 4.4e-11 70.9 81 51.9
FAN03G1761 Fragaria x ananassa HOM05D003502 ORTHO05D004250 4.4e-11 70.9 81 51.9
Gohir.A05G409100 Gossypium hirsutum HOM05D003502 ORTHO05D004250 4.4e-11 70.9 59 62.7
Gohir.D04G006300 Gossypium hirsutum HOM05D003502 ORTHO05D004250 4.4e-11 70.9 59 62.7
Gorai.012G007900 Gossypium raimondii HOM05D003502 ORTHO05D004250 4.4e-11 70.9 59 62.7
Glyma.10G118100 Glycine max HOM05D003502 ORTHO05D004250 5.7e-11 70.5 81 48.1
PGR042G1531 Punica granatum HOM05D003502 ORTHO05D004250 5.7e-11 70.5 81 51.9
vmacro06503 Vaccinium macrocarpon HOM05D003502 ORTHO05D004250 5.7e-11 70.5 80 51.2
FAN10G2252 Fragaria x ananassa HOM05D000067 ORTHO05D004250 7.5e-11 70.1 81 50.6
Cc02_g00380 Coffea canephora HOM05D003502 ORTHO05D004250 9.8e-11 69.7 49 69.4
Medtr1g048630 Medicago truncatula HOM05D003502 ORTHO05D004250 9.8e-11 69.7 81 49.4
Psat6g094880 Pisum sativum HOM05D003502 ORTHO05D004250 1.3e-10 69.3 59 57.6
Ca_25960_v3 Cicer arietinum L. HOM05D003502 ORTHO05D004250 1.7e-10 68.9 81 48.1
Nn1g07854 Nelumbo nucifera HOM05D003502 ORTHO05D004250 1.7e-10 68.9 81 50.6
Psat6g094840 Pisum sativum HOM05D003502 ORTHO05D004250 2.2e-10 68.6 81 49.4
Thecc.10G089300 Theobroma cacao HOM05D003502 ORTHO05D004250 2.2e-10 68.6 59 59.3
ECA246G0536 Erigeron canadensis HOM05D003502 ORTHO05D004250 2.8e-10 68.2 81 50.6
TPR.G19134 Trifolium pratense HOM05D003502 ORTHO05D004250 3.7e-10 67.8 81 48.1
DCAR_014574 Daucus carota HOM05D003502 ORTHO05D004250 4.8e-10 67.4 79 48.1
Aqoxy7G00566 Aquilegia oxysepala HOM05D003502 ORTHO05D004250 8.3e-10 66.6 81 48.1
MBI04_g06222_MAGBIO Magnolia biondii HOM05D003502 ORTHO05D004250 8.3e-10 66.6 81 46.9
arahy.Tifrunner.gnm1.ann1.FUJ27D Arachis hypogaea HOM05D003502 ORTHO05D004250 1.4e-09 65.9 81 45.7
arahy.Tifrunner.gnm1.ann1.KF4QTS Arachis hypogaea HOM05D003502 ORTHO05D004250 1.4e-09 65.9 81 45.7
Migut.F01860 Erythranthe guttata HOM05D003502 ORTHO05D004250 1.4e-09 65.9 80 51.2
Psat4g073680 Pisum sativum HOM05D003502 ORTHO05D004250 1.4e-09 65.9 81 46.9
Duzib114G0543 Durio zibethinus HOM05D003502 ORTHO05D004250 1.8e-09 65.5 59 61.0
Oeu010168.1 Olea europaea HOM05D003502 ORTHO05D004250 2.4e-09 65.1 80 47.5
HanXRQChr05g0148851 Helianthus annuus HOM05D003502 ORTHO05D004250 3.1e-09 64.7 49 67.3
AUR62019393 Chenopodium quinoa HOM05D003502 ORTHO05D004250 4.1e-09 64.3 60 53.3
AUR62006100 Chenopodium quinoa HOM05D003502 ORTHO05D004250 7.0e-09 63.5 60 51.7
SHI02509 Sapria himalayana HOM05D003502 ORTHO05D010567 9.1e-09 63.2 60 58.3
Ah.07g205720 Amaranthus hybridus HOM05D003502 ORTHO05D004250 2.0e-08 62.0 60 51.7
MSTRG.336 Avicennia marina HOM05D003502 ORTHO05D004250 3.5e-08 61.2 80 48.8
CDE06G0840 Ceratophyllum demersum HOM05D000250 ORTHO05D002477 4.5e-08 60.8 59 54.2
SEGI_11487 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 7.7e-08 60.1 59 50.8
SEGI_34091 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 7.7e-08 60.1 59 50.8
SalBow6G5501 Salvia bowleyana HOM05D003502 ORTHO05D004250 1.3e-07 59.3 80 45.0
FAN10G2333 Fragaria x ananassa HOM05D003502 ORTHO05D004250 1.7e-07 58.9 71 49.3
Hund20998 Selenicereus undatus HOM05D003502 ORTHO05D004250 2.3e-07 58.5 60 50.0
Lj3A923T57 Lonicera japonica HOM05D003502 ORTHO05D004250 3.8e-07 57.8 38 73.7
SGA_v2.0_scaffold283G47001 Striga asiatica HOM05D003502 ORTHO05D004250 3.8e-07 57.8 80 43.8
EL10Ac3g05293 Beta vulgaris HOM05D003502 ORTHO05D004250 5.0e-07 57.4 60 50.0
HanXRQChr17g0543411 Helianthus annuus HOM05D003502 ORTHO05D010567 5.0e-07 57.4 55 52.7
Os12g0433500 Oryza sativa ssp. japonica HOM05D003502 ORTHO05D004250 5.0e-07 57.4 59 50.8
HPP92_008318 Vanilla planifolia HOM05D003502 ORTHO05D004250 6.6e-07 57.0 80 43.8
Zm00001eb141360 Zea mays HOM05D003502 ORTHO05D004250 6.6e-07 57.0 81 40.7
CsaV3_5G005300 Cucumis sativus L. HOM05D003502 ORTHO05D010567 1.1e-06 56.2 80 45.0
AagrBONN_evm.TU.Sc2ySwM_344.1826 Anthoceros agrestis HOM05D003502 ORTHO05D004250 9.5e-06 53.1 51 54.9


User provided reference genes

Program Settings