Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35584H Brassica oleracea HOM05D014498 ORTHO05D104133 4.9e-44 180.6 84 100.0
C02p36390 Brassica napus HOM05D014498 ORTHO05D021875 2.0e-21 105.5 51 98.0
C07p17760 Brassica napus HOM05D014498 ORTHO05D021875 5.8e-21 104.0 51 96.1
C03p64040 Brassica napus HOM05D014498 ORTHO05D021875 9.9e-21 103.2 51 96.1
BcaC01g01331 Brassica carinata HOM05D001962 ORTHO05D002236 6.4e-20 100.5 51 94.1
BcaC06g35291 Brassica carinata HOM05D014498 ORTHO05D021875 1.4e-11 72.8 36 94.4
PGR102G0425 Punica granatum HOM05D000349 ORTHO05D000620 2.4e-06 55.5 68 45.6
Gohir.A13G099400 Gossypium hirsutum HOM05D000349 ORTHO05D000620 3.1e-06 55.1 56 51.8
Gohir.D13G102800 Gossypium hirsutum HOM05D000349 ORTHO05D000620 3.1e-06 55.1 56 51.8
Gorai.013G115100 Gossypium raimondii HOM05D000349 ORTHO05D000620 3.1e-06 55.1 56 51.8
Lalb_Chr12g0205221 Lupinus albus HOM05D000349 ORTHO05D000620 3.1e-06 55.1 56 51.8
Lalb_Chr13g0295081 Lupinus albus HOM05D000349 ORTHO05D000620 3.1e-06 55.1 56 51.8
SalBow2G0784 Salvia bowleyana HOM05D000349 ORTHO05D000620 3.1e-06 55.1 56 51.8
unitig_736.g22336 Utricularia gibba HOM05D000349 ORTHO05D000620 3.1e-06 55.1 68 45.6
Actinidia00899 Actinidia chinensis HOM05D000349 ORTHO05D000620 4.0e-06 54.7 56 51.8
Actinidia16246 Actinidia chinensis HOM05D000349 ORTHO05D000620 4.0e-06 54.7 56 51.8
Aqoxy2G00521 Aquilegia oxysepala HOM05D000349 ORTHO05D000620 4.0e-06 54.7 56 51.8
MSTRG.20940 Avicennia marina HOM05D000349 ORTHO05D000620 4.0e-06 54.7 68 45.6
BcaB01g04831 Brassica carinata HOM05D000349 ORTHO05D000620 4.0e-06 54.7 56 51.8
A03p09620 Brassica napus HOM05D000349 ORTHO05D000620 4.0e-06 54.7 56 51.8
C03p11190 Brassica napus HOM05D000349 ORTHO05D000620 4.0e-06 54.7 56 51.8
BolC3t13589H Brassica oleracea HOM05D000349 ORTHO05D000620 4.0e-06 54.7 56 51.8
BraA03t10279Z Brassica rapa HOM05D000349 ORTHO05D000620 4.0e-06 54.7 56 51.8
Cc01_g00860 Coffea canephora HOM05D000349 ORTHO05D000620 4.0e-06 54.7 56 51.8
COL.COLO4_07331 Corchorus olitorius HOM05D000349 ORTHO05D000620 4.0e-06 54.7 40 65.0
GSVIVG01025462001 Vitis vinifera HOM05D000349 ORTHO05D000620 4.0e-06 54.7 56 51.8
Zm00001eb399990 Zea mays HOM05D000349 ORTHO05D000620 4.0e-06 54.7 56 53.6
Aa31LG3G890 Aethionema arabicum HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
Aa31LG3G920 Aethionema arabicum HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
AL6G31290 Arabidopsis lyrata HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
AL6G31300 Arabidopsis lyrata HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
AT5G19770 Arabidopsis thaliana HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
AT5G19780 Arabidopsis thaliana HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
BcaB08g36575 Brassica carinata HOM05D000349 ORTHO05D010734 5.2e-06 54.3 56 51.8
BcaB08g36578 Brassica carinata HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
BcaC03g13708 Brassica carinata HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
BcaC03g13709 Brassica carinata HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
BcaC04g19375 Brassica carinata HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
BcaC04g19378 Brassica carinata HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
A02p05790 Brassica napus HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
A02p05800 Brassica napus HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
A10p19940 Brassica napus HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
A10p19950 Brassica napus HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
BNapus_Darmor_BZH_scaffold_38p02130 Brassica napus HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
BNapus_Darmor_BZH_scaffold_38p02140 Brassica napus HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
C09p56390 Brassica napus HOM05D000349 ORTHO05D010734 5.2e-06 54.3 56 51.8
BolC2t06979H Brassica oleracea HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
BolC2t06980H Brassica oleracea HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
BolC9t58503H Brassica oleracea HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
BolC9t58508H Brassica oleracea HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
BraA02t05531Z Brassica rapa HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
BraA02t05532Z Brassica rapa HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
BraA10t44069Z Brassica rapa HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
BraA10t44070Z Brassica rapa HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
Carub.0006s1812 Capsella rubella HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
Carub.0006s1813 Capsella rubella HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
CARHR193110 Cardamine hirsuta HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
CARHR193130 Cardamine hirsuta HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
MELO3C026613.2 Cucumis melo HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
CsaV3_3G043190 Cucumis sativus L. HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
Thhalv10013521m.g Eutrema salsugineum HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
Thhalv10013523m.g Eutrema salsugineum HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
Medtr7g085800 Medicago truncatula HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 53.6
Sed0019992 Sechium edule HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
unitig_26.g9559 Utricularia gibba HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
HPP92_026633 Vanilla planifolia HOM05D000349 ORTHO05D000620 5.2e-06 54.3 56 51.8
MSTRG.18018 Avicennia marina HOM05D000349 ORTHO05D000620 6.9e-06 53.9 68 44.1
MD03G1004400 Malus domestica HOM05D000349 ORTHO05D000620 6.9e-06 53.9 39 66.7
MD11G1005100 Malus domestica HOM05D000349 ORTHO05D000620 6.9e-06 53.9 39 66.7
unitig_899.g15028 Utricularia gibba HOM05D000349 ORTHO05D000620 6.9e-06 53.9 39 66.7
CAN.G575.2 Capsicum annuum HOM05D000349 ORTHO05D000620 9.0e-06 53.5 56 50.0
CiPaw.13G176400 Carya illinoinensis HOM05D000349 ORTHO05D000620 9.0e-06 53.5 56 50.0
MELO3C018532.2 Cucumis melo HOM05D000349 ORTHO05D000620 9.0e-06 53.5 39 66.7
Gohir.A12G081730 Gossypium hirsutum HOM05D000349 ORTHO05D000620 9.0e-06 53.5 39 66.7
Os07g0574800 Oryza sativa ssp. japonica HOM05D000349 ORTHO05D000620 9.0e-06 53.5 39 66.7
Rhsim01G0184500 Rhododendron simsii HOM05D000349 ORTHO05D000620 9.0e-06 53.5 39 66.7
Sed0004100 Sechium edule HOM05D000349 ORTHO05D000620 9.0e-06 53.5 56 50.0
Sed0009326 Sechium edule HOM05D000349 ORTHO05D000620 9.0e-06 53.5 56 50.0
Thecc.01G080500 Theobroma cacao HOM05D000349 ORTHO05D000620 9.0e-06 53.5 39 66.7
Thecc.09G207500 Theobroma cacao HOM05D000349 ORTHO05D000620 9.0e-06 53.5 56 50.0
unitig_749.g13582 Utricularia gibba HOM05D000349 ORTHO05D000620 9.0e-06 53.5 56 50.0


User provided reference genes

Program Settings