Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35302H Brassica oleracea HOM05D065876 ORTHO05D041678 1.0e-44 183.0 89 100.0
C06p01740 Brassica napus HOM05D065876 ORTHO05D041678 3.5e-24 114.8 56 98.2
BolC2t10372H Brassica oleracea HOM05D000276 ORTHO05D004241 2.2e-18 95.5 59 78.0
BcaB04g17541 Brassica carinata HOM05D000276 ORTHO05D004241 3.7e-18 94.7 50 88.0
BcaC07g37230 Brassica carinata HOM05D000276 ORTHO05D004241 3.7e-18 94.7 50 88.0
A08p05870 Brassica napus HOM05D000276 ORTHO05D004241 3.7e-18 94.7 50 88.0
C08p06510 Brassica napus HOM05D000276 ORTHO05D004241 3.7e-18 94.7 50 88.0
BolC8t47498H Brassica oleracea HOM05D000276 ORTHO05D004241 3.7e-18 94.7 50 88.0
BraA08t32589Z Brassica rapa HOM05D000276 ORTHO05D004241 3.7e-18 94.7 50 88.0
Carub.0001s3602 Capsella rubella HOM05D000276 ORTHO05D004241 3.7e-18 94.7 50 88.0
CARHR036800 Cardamine hirsuta HOM05D000276 ORTHO05D004241 3.7e-18 94.7 50 88.0
Thhalv10011712m.g Eutrema salsugineum HOM05D000276 ORTHO05D004241 3.7e-18 94.7 50 88.0
Sp1g34380 Schrenkiella parvula HOM05D000276 ORTHO05D004241 3.7e-18 94.7 50 88.0
Aa31LG9G12860 Aethionema arabicum HOM05D000276 ORTHO05D004241 8.3e-18 93.6 48 91.7
AL1G53390 Arabidopsis lyrata HOM05D000276 ORTHO05D004241 8.3e-18 93.6 48 91.7
AL8G18280 Arabidopsis lyrata HOM05D000276 ORTHO05D004241 8.3e-18 93.6 48 91.7
AT1G47250 Arabidopsis thaliana HOM05D000276 ORTHO05D004241 8.3e-18 93.6 48 91.7
AT5G42790 Arabidopsis thaliana HOM05D000276 ORTHO05D004241 8.3e-18 93.6 48 91.7
BcaC02g10805 Brassica carinata HOM05D000276 ORTHO05D004241 8.3e-18 93.6 48 91.7
BcaC06g31747 Brassica carinata HOM05D000276 ORTHO05D004241 8.3e-18 93.6 48 91.7
C04p24960 Brassica napus HOM05D000276 ORTHO05D004241 8.3e-18 93.6 48 91.7
Carub.0008s0611 Capsella rubella HOM05D000276 ORTHO05D004241 8.3e-18 93.6 48 91.7
CARHR181760 Cardamine hirsuta HOM05D000276 ORTHO05D004241 8.3e-18 93.6 48 91.7
Thhalv10003255m.g Eutrema salsugineum HOM05D000276 ORTHO05D004241 8.3e-18 93.6 48 91.7
Sp2g07450 Schrenkiella parvula HOM05D000276 ORTHO05D004241 8.3e-18 93.6 48 91.7
QL02p009221 Quercus lobata HOM05D000276 ORTHO05D004241 1.1e-17 93.2 50 86.0
THA.LOC104812561 Tarenaya hassleriana HOM05D000276 ORTHO05D004241 1.4e-17 92.8 50 86.0
BcaB07g31044 Brassica carinata HOM05D000276 ORTHO05D004241 1.8e-17 92.4 48 89.6
BcaC04g21970 Brassica carinata HOM05D000276 ORTHO05D004241 1.8e-17 92.4 48 89.6
A02p27580 Brassica napus HOM05D000276 ORTHO05D004241 1.8e-17 92.4 48 89.6
A09p19980 Brassica napus HOM05D000276 ORTHO05D004241 1.8e-17 92.4 48 89.6
C09p25340 Brassica napus HOM05D000276 ORTHO05D004241 1.8e-17 92.4 48 89.6
BolC9t55433H Brassica oleracea HOM05D000276 ORTHO05D004241 1.8e-17 92.4 48 89.6
BraA02t07791Z Brassica rapa HOM05D000276 ORTHO05D004241 1.8e-17 92.4 48 89.6
Cfa018182 Carpinus fangiana HOM05D000276 ORTHO05D004241 1.8e-17 92.4 50 86.0
CiPaw.15G081600 Carya illinoinensis HOM05D000276 ORTHO05D004241 1.8e-17 92.4 50 86.0
CiPaw.16G060400 Carya illinoinensis HOM05D000276 ORTHO05D004241 1.8e-17 92.4 50 86.0
Haze_17936 Corylus avellana HOM05D000276 ORTHO05D004241 1.8e-17 92.4 50 86.0
BolC4t23995H Brassica oleracea HOM05D000276 ORTHO05D004241 2.4e-17 92.0 48 89.6
Cpa.g.sc800.1 Carica papaya HOM05D000276 ORTHO05D004241 3.1e-17 91.7 48 89.6
Eucgr.F01586 Eucalyptus grandis HOM05D000276 ORTHO05D004241 4.1e-17 91.3 50 84.0
TAR381G1175 Trochodendron aralioides HOM05D000276 ORTHO05D004241 4.1e-17 91.3 50 84.0
TAR628G0879 Trochodendron aralioides HOM05D000276 ORTHO05D004241 4.1e-17 91.3 50 84.0
BcaC03g16506 Brassica carinata HOM05D000276 ORTHO05D004241 7.0e-17 90.5 48 87.5
C02p43230 Brassica napus HOM05D000276 ORTHO05D004241 7.0e-17 90.5 48 87.5
THA.LOC104801918 Tarenaya hassleriana HOM05D000276 ORTHO05D004241 7.0e-17 90.5 50 84.0
Atru.chr13.441 Acer truncatum HOM05D000276 ORTHO05D004241 1.2e-16 89.7 63 66.7
MSTRG.22305 Avicennia marina HOM05D000276 ORTHO05D004241 1.6e-16 89.4 50 82.0
Hund26587 Selenicereus undatus HOM05D000276 ORTHO05D004241 1.6e-16 89.4 50 84.0
Hund26588 Selenicereus undatus HOM05D000276 ORTHO05D004241 1.6e-16 89.4 50 84.0
Aqoxy5G01588 Aquilegia oxysepala HOM05D000276 ORTHO05D004241 2.0e-16 89.0 50 82.0
CSS0017933 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D004241 2.0e-16 89.0 50 82.0
CSS0039888 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D004241 2.0e-16 89.0 50 82.0
Ciclev10002110m.g Citrus clementina HOM05D000276 ORTHO05D004241 2.0e-16 89.0 50 82.0
Duzib041G0309 Durio zibethinus HOM05D000276 ORTHO05D004241 2.0e-16 89.0 50 82.0
Duzib093G1628 Durio zibethinus HOM05D000276 ORTHO05D004241 2.0e-16 89.0 50 82.0
Gohir.D05G260300 Gossypium hirsutum HOM05D000276 ORTHO05D004241 2.0e-16 89.0 50 82.0
Gohir.D06G004500 Gossypium hirsutum HOM05D000276 ORTHO05D004241 2.0e-16 89.0 50 82.0
Gorai.009G272200 Gossypium raimondii HOM05D000276 ORTHO05D004241 2.0e-16 89.0 50 82.0
Gorai.010G009100 Gossypium raimondii HOM05D000276 ORTHO05D004241 2.0e-16 89.0 50 82.0
Lalb_Chr22g0354681 Lupinus albus HOM05D000276 ORTHO05D004241 2.0e-16 89.0 50 82.0
Lalb_Chr24g0398911 Lupinus albus HOM05D000276 ORTHO05D004241 2.0e-16 89.0 50 82.0
PGR083G0234 Punica granatum HOM05D000276 ORTHO05D004241 2.0e-16 89.0 50 82.0
Thecc.08G030100 Theobroma cacao HOM05D000276 ORTHO05D004241 2.0e-16 89.0 50 82.0
TWI12G0517 Tripterygium wilfordii HOM05D000276 ORTHO05D004241 2.7e-16 88.6 50 82.0
TWI36G0782 Tripterygium wilfordii HOM05D000276 ORTHO05D004241 2.7e-16 88.6 50 82.0
Lj5g0000748 Lotus japonicus HOM05D000276 ORTHO05D004241 3.5e-16 88.2 48 85.4
Manes.18G022500 Manihot esculenta HOM05D000276 ORTHO05D004241 3.5e-16 88.2 50 82.0
Nn5g29656 Nelumbo nucifera HOM05D000276 ORTHO05D004241 3.5e-16 88.2 50 78.0
arahy.Tifrunner.gnm1.ann1.LWQV1C Arachis hypogaea HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
arahy.Tifrunner.gnm1.ann1.P4XZCB Arachis hypogaea HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
CANSAT25G0548 Cannabis sativa HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
CANSAT25G0556 Cannabis sativa HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
Ca_13359_v3 Cicer arietinum L. HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
ClCG08G014860 Citrullus lanatus HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
MELO3C010960.2 Cucumis melo HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
CsaV3_2G028900 Cucumis sativus L. HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
Duzib116G0719 Durio zibethinus HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
Migut.C00752 Erythranthe guttata HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
FvH4_2g39570 Fragaria vesca HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
FAN15G3433 Fragaria x ananassa HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
FAN20G0466 Fragaria x ananassa HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
FAN27G0463 Fragaria x ananassa HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
Gohir.A01G114600 Gossypium hirsutum HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
Gohir.A06G009000 Gossypium hirsutum HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
Gohir.D01G103000 Gossypium hirsutum HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
Gorai.002G126700 Gossypium raimondii HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
Medtr1g022410 Medicago truncatula HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
Psat6g008360 Pisum sativum HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
Prupe.1G376700 Prunus persica HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
RcHm_v2.0_Chr6g0301351 Rosa chinensis HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
SalBow7G3764 Salvia bowleyana HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
Sed0012133 Sechium edule HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
SEGI_24504 Sequoiadendron giganteum HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 82.0
SGA_v2.0_scaffold11G05817 Striga asiatica HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
TPR.G20162 Trifolium pratense HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
TAR376G0460 Trochodendron aralioides HOM05D000276 ORTHO05D004241 4.5e-16 87.8 50 80.0
AUR62033853 Chenopodium quinoa HOM05D000276 ORTHO05D004241 5.9e-16 87.4 50 82.0
AUR62041673 Chenopodium quinoa HOM05D000276 ORTHO05D004241 5.9e-16 87.4 50 82.0
ECA232G2769 Erigeron canadensis HOM05D000276 ORTHO05D004241 5.9e-16 87.4 50 80.0
Gohir.A05G258600 Gossypium hirsutum HOM05D000276 ORTHO05D004241 5.9e-16 87.4 50 80.0
HanXRQChr16g0501521 Helianthus annuus HOM05D000276 ORTHO05D004241 5.9e-16 87.4 50 80.0
Hma1.2p1_0203F.1_g086175 Hydrangea macrophylla HOM05D000276 ORTHO05D004241 5.9e-16 87.4 50 80.0
Lsat_1_v5_gn_4_117781 Lactuca sativa HOM05D000276 ORTHO05D004241 5.9e-16 87.4 50 80.0
Lj4A788G55 Lonicera japonica HOM05D000276 ORTHO05D004241 5.9e-16 87.4 50 80.0
Nitab4.5_0001091g0040 Nicotiana tabacum HOM05D000276 ORTHO05D004241 5.9e-16 87.4 50 80.0
Nitab4.5_0004802g0030 Nicotiana tabacum HOM05D000276 ORTHO05D004241 5.9e-16 87.4 50 80.0
Rhsim06G0030800 Rhododendron simsii HOM05D000276 ORTHO05D004241 5.9e-16 87.4 50 80.0
Ah.11g043220 Amaranthus hybridus HOM05D000276 ORTHO05D004241 7.7e-16 87.0 50 82.0
Ah.11g043240 Amaranthus hybridus HOM05D000276 ORTHO05D004241 7.7e-16 87.0 50 82.0
MSTRG.1265 Avicennia marina HOM05D000276 ORTHO05D004241 7.7e-16 87.0 48 83.3
EL10Ac7g16580 Beta vulgaris HOM05D000276 ORTHO05D004241 7.7e-16 87.0 50 82.0
MBI10_g06733_MAGBIO Magnolia biondii HOM05D000276 ORTHO05D004241 7.7e-16 87.0 50 80.0
Manes.05G157400 Manihot esculenta HOM05D000276 ORTHO05D004241 7.7e-16 87.0 50 82.0
Potri.002G033900 Populus trichocarpa HOM05D000276 ORTHO05D004241 7.7e-16 87.0 50 80.0
Potri.005G229200 Populus trichocarpa HOM05D000276 ORTHO05D004241 7.7e-16 87.0 50 80.0
Sabra02G0027200 Salix brachista HOM05D000276 ORTHO05D004241 7.7e-16 87.0 50 80.0
Sc02g0005930 Simmondsia chinensis HOM05D000276 ORTHO05D004241 7.7e-16 87.0 50 82.0
Sed0027223 Sechium edule HOM05D000276 ORTHO05D004241 1.0e-15 86.7 50 78.0
Actinidia15345 Actinidia chinensis HOM05D000276 ORTHO05D004241 1.3e-15 86.3 50 80.0
Actinidia22528 Actinidia chinensis HOM05D000276 ORTHO05D004241 1.3e-15 86.3 50 80.0
Solyc04g080590.4 Solanum lycopersicum HOM05D000276 ORTHO05D004241 1.3e-15 86.3 50 78.0
Sopen04g034180 Solanum pennellii HOM05D000276 ORTHO05D004241 1.3e-15 86.3 50 78.0
PGSC0003DMG400003740 Solanum tuberosum HOM05D000276 ORTHO05D004241 1.3e-15 86.3 50 78.0
COL.COLO4_26280 Corchorus olitorius HOM05D000276 ORTHO05D004241 1.7e-15 85.9 50 80.0
DCAR_009970 Daucus carota HOM05D000276 ORTHO05D004241 1.7e-15 85.9 50 78.0
DCAR_022475 Daucus carota HOM05D000276 ORTHO05D004241 1.7e-15 85.9 50 78.0
Dinv36105 Davidia involucrata HOM05D000276 ORTHO05D004241 1.7e-15 85.9 50 78.0
Dinv39439 Davidia involucrata HOM05D000276 ORTHO05D004241 1.7e-15 85.9 50 78.0
Glyma.09G161300 Glycine max HOM05D000276 ORTHO05D004241 1.7e-15 85.9 50 78.0
Glyma.14G073000 Glycine max HOM05D000276 ORTHO05D004241 1.7e-15 85.9 50 78.0
Glyma.17G252100 Glycine max HOM05D000276 ORTHO05D004241 1.7e-15 85.9 50 78.0
Mapoly0138s0042 Marchantia polymorpha HOM05D000276 ORTHO05D004241 1.7e-15 85.9 50 74.0
Nitab4.5_0003265g0090 Nicotiana tabacum HOM05D000276 ORTHO05D004241 1.7e-15 85.9 50 78.0
Nitab4.5_0008031g0050 Nicotiana tabacum HOM05D000276 ORTHO05D004241 1.7e-15 85.9 50 78.0
Phvul.001G013000 Phaseolus vulgaris HOM05D000276 ORTHO05D004241 1.7e-15 85.9 50 78.0
Sabra05G0177100 Salix brachista HOM05D000276 ORTHO05D004241 1.7e-15 85.9 50 78.0
SGA_v2.0_scaffold201G41398 Striga asiatica HOM05D000276 ORTHO05D004241 1.7e-15 85.9 50 78.0
vmacro21660 Vaccinium macrocarpon HOM05D000276 ORTHO05D004241 1.7e-15 85.9 50 78.0
VMungo0647G0747 Vigna mungo HOM05D000276 ORTHO05D004241 1.7e-15 85.9 50 78.0
MD08G1028900 Malus domestica HOM05D000276 ORTHO05D004241 2.3e-15 85.5 50 78.0
Pp3c25_15330 Physcomitrium patens HOM05D000276 ORTHO05D004241 2.3e-15 85.5 50 74.0
unitig_748.g7753 Utricularia gibba HOM05D000276 ORTHO05D004241 2.3e-15 85.5 50 76.0
ATR0693G251 Amborella trichopoda HOM05D000276 ORTHO05D004241 2.9e-15 85.1 50 74.0
CSS0046824 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D004241 2.9e-15 85.1 50 76.0
CDE04G1556 Ceratophyllum demersum HOM05D000276 ORTHO05D004241 2.9e-15 85.1 50 76.0
AagrBONN_evm.TU.Sc2ySwM_117.2334 Anthoceros agrestis HOM05D000276 ORTHO05D004241 3.8e-15 84.7 50 72.0
CAN.G1226.42 Capsicum annuum HOM05D000276 ORTHO05D004241 3.8e-15 84.7 50 76.0
CBR_g54888 Chara braunii HOM05D000276 ORTHO05D004241 5.0e-15 84.3 50 72.0
Peaxi162Scf00064g00526 Petunia axillaris HOM05D000276 ORTHO05D004241 5.0e-15 84.3 50 78.0
unitig_32.g11150 Utricularia gibba HOM05D000276 ORTHO05D004241 5.0e-15 84.3 50 76.0
VMungo0464G0586 Vigna mungo HOM05D000276 ORTHO05D004241 5.0e-15 84.3 50 78.0
CDE12G0026 Ceratophyllum demersum HOM05D000276 ORTHO05D004241 6.6e-15 84.0 50 74.0
Pp3c16_23890 Physcomitrium patens HOM05D000276 ORTHO05D004241 6.6e-15 84.0 50 74.0
PGSC0003DMG400015462 Solanum tuberosum HOM05D000276 ORTHO05D004241 1.5e-14 82.8 50 76.0
PSO170G6685 Papaver somniferum HOM05D000276 ORTHO05D004241 1.9e-14 82.4 50 74.0
PSO210G4790 Papaver somniferum HOM05D000276 ORTHO05D004241 1.9e-14 82.4 50 74.0
EL10Ac9g20744 Beta vulgaris HOM05D001804 ORTHO05D004241 3.3e-14 81.6 48 79.2
PSO063G4880 Papaver somniferum HOM05D000276 ORTHO05D004241 4.2e-14 81.3 50 74.0
PSO409G0046 Papaver somniferum HOM05D000276 ORTHO05D004241 4.2e-14 81.3 50 74.0
Peaxi162Scf00140g00018 Petunia axillaris HOM05D000276 ORTHO05D004241 7.2e-14 80.5 50 72.0
Oeu018215.1 Olea europaea HOM05D000276 ORTHO05D004241 1.2e-13 79.7 50 72.0
Aqoxy7G02700 Aquilegia oxysepala HOM05D000276 ORTHO05D004241 2.8e-13 78.6 50 70.0
FAN27G2943 Fragaria x ananassa HOM05D000276 ORTHO05D004241 1.0e-12 76.6 50 72.0
Zm00001eb231490 Zea mays HOM05D000276 ORTHO05D004241 1.8e-12 75.9 50 64.0
Medtr4g012740 Medicago truncatula HOM05D000276 ORTHO05D004241 5.2e-12 74.3 50 72.0
FAN09G3144 Fragaria x ananassa HOM05D000276 ORTHO05D004241 2.0e-11 72.4 68 48.5
HanXRQChr09g0269001 Helianthus annuus HOM05D000276 ORTHO05D004241 3.4e-11 71.6 75 52.0
HPP92_000285 Vanilla planifolia HOM05D000276 ORTHO05D004241 9.8e-11 70.1 38 81.6
SMO337G0086 Selaginella moellendorffii HOM05D000276 ORTHO05D004241 2.2e-10 68.9 50 58.0
BcaC08g42934 Brassica carinata HOM05D000276 ORTHO05D004241 2.8e-10 68.6 32 100.0
Cre06.g304300 Chlamydomonas reinhardtii HOM05D000276 ORTHO05D004241 1.8e-09 65.9 50 52.0
arahy.Tifrunner.gnm1.ann1.EVR0EE Arachis hypogaea HOM05D000012 ORTHO05D085565 5.4e-09 64.3 40 67.5
Haze_27424 Corylus avellana HOM05D000276 ORTHO05D004241 1.7e-07 59.3 50 44.0
Actinidia29815 Actinidia chinensis HOM05D000276 ORTHO05D004241 2.9e-07 58.5 55 49.1
Medtr4g057090 Medicago truncatula HOM05D000276 ORTHO05D004241 7.3e-06 53.9 50 56.0


User provided reference genes

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