Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 1.3e-185 652.9 338 100.0
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 6.7e-185 650.6 338 99.7
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 6.7e-185 650.6 338 99.7
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 3.8e-172 608.2 348 93.1
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 3.8e-172 608.2 348 93.1
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 1.1e-166 590.1 348 89.1
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 3.4e-165 585.1 330 90.9
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 4.5e-165 584.7 345 89.0
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 7.7e-165 583.9 328 90.9
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 1.7e-164 582.8 343 88.6
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 2.2e-164 582.4 332 90.1
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 6.7e-161 570.9 325 90.8
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 2.4e-150 535.8 395 73.9
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 6.5e-140 501.1 302 84.4
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 8.3e-127 457.6 334 71.0
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 2.7e-125 452.6 310 74.8
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 3.5e-125 452.2 316 72.2
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 1.0e-124 450.7 357 65.8
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 1.3e-124 450.3 325 70.5
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 2.9e-124 449.1 310 72.9
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 1.1e-123 447.2 317 72.6
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 1.9e-123 446.4 323 70.0
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 5.6e-123 444.9 310 72.6
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 1.2e-122 443.7 315 71.1
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 1.2e-122 443.7 332 69.0
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 3.6e-122 442.2 303 72.9
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 4.7e-122 441.8 305 72.5
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 6.1e-122 441.4 316 71.5
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 8.0e-122 441.0 323 69.3
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 2.3e-121 439.5 321 69.2
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 2.3e-121 439.5 337 68.0
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 5.2e-121 438.3 314 72.3
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 6.8e-121 438.0 344 66.3
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 1.5e-120 436.8 333 67.9
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 3.4e-120 435.6 303 74.3
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 3.4e-120 435.6 337 67.7
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 5.7e-120 434.9 303 73.9
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 5.7e-120 434.9 323 69.0
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 1.3e-119 433.7 325 68.3
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 2.2e-119 433.0 294 72.8
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 2.9e-119 432.6 290 73.8
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 4.9e-119 431.8 329 66.6
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 4.1e-118 428.7 329 66.6
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 1.6e-117 426.8 328 67.1
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 2.0e-117 426.4 352 64.5
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 2.7e-117 426.0 325 65.5
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 2.7e-117 426.0 317 67.5
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 7.8e-117 424.5 368 62.2
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 7.8e-117 424.5 328 66.2
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 1.0e-116 424.1 292 71.6
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 1.3e-116 423.7 292 71.6
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 1.7e-116 423.3 292 71.6
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 2.3e-116 422.9 327 65.7
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 3.0e-116 422.5 315 69.2
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 3.0e-116 422.5 292 71.6
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 3.0e-116 422.5 313 67.1
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 3.9e-116 422.2 303 70.3
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 3.9e-116 422.2 292 70.5
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 5.0e-116 421.8 313 69.3
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 1.1e-115 420.6 300 70.0
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 1.1e-115 420.6 319 67.1
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 3.3e-115 419.1 330 66.4
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 3.3e-115 419.1 342 66.1
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 3.3e-115 419.1 287 72.1
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 5.6e-115 418.3 325 65.2
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 2.1e-114 416.4 308 68.8
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 6.2e-114 414.8 313 68.1
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 1.0e-113 414.1 301 70.1
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 1.8e-113 413.3 318 65.1
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 8.9e-113 411.0 315 66.7
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 5.8e-112 408.3 326 66.6
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 1.4e-110 403.7 294 69.7
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 4.1e-110 402.1 303 66.0
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 3.9e-108 395.6 289 70.6
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 3.3e-107 392.5 300 66.7
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 5.6e-107 391.7 266 72.6
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 7.3e-107 391.3 298 68.8
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 1.1e-105 387.5 291 71.1
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 5.8e-104 381.7 320 62.2
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 2.2e-103 379.8 265 73.2
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 5.4e-102 375.2 279 67.4
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 6.0e-101 371.7 438 48.6
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 6.6e-100 368.2 284 63.0
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 2.6e-96 356.3 459 45.8
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 4.4e-96 355.5 315 61.0
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 2.9e-95 352.8 325 58.8
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 1.1e-94 350.9 391 53.2
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 4.1e-94 349.0 265 63.0
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 1.9e-91 340.1 541 41.0
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 5.6e-91 338.6 235 71.9
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 1.6e-90 337.0 222 74.3
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 1.1e-89 334.3 235 68.5
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 2.9e-87 326.2 290 57.9
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 6.4e-87 325.1 289 58.8
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 1.9e-86 323.6 232 68.1
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 1.9e-86 323.6 295 56.6
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 1.7e-84 317.0 289 56.7
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 2.3e-84 316.6 213 73.7
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 1.5e-80 303.9 300 52.3
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 1.7e-79 300.4 353 51.3
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 2.9e-79 299.7 216 68.1
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 2.5e-75 286.6 184 76.6
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 6.3e-58 228.8 142 76.8
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.8e-57 227.3 187 65.8
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 7.6e-56 221.9 191 57.6
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 6.5e-55 218.8 310 41.6
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 4.2e-54 216.1 197 59.9
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 4.2e-54 216.1 168 61.9
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 1.8e-49 200.7 315 41.3
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 1.3e-47 194.5 193 50.8
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 1.7e-47 194.1 314 37.6
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 3.2e-46 189.9 201 52.7
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 2.1e-45 187.2 109 89.0
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 2.5e-38 163.7 92 93.5
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 2.4e-33 147.1 214 41.1
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 6.7e-28 129.0 213 36.6
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 3.7e-26 123.2 99 64.6
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 6.5e-23 112.5 84 64.3
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 1.5e-22 111.3 82 64.6
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 5.2e-20 102.8 54 94.4
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 1.3e-18 98.2 122 51.6
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 2.2e-18 97.4 72 63.9
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 3.8e-15 86.7 169 31.4
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 2.1e-13 80.9 55 65.5
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 3.0e-12 77.0 108 45.4
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.7e-10 70.1 58 65.5
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.8e-09 67.8 58 63.8
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.8e-09 67.8 58 63.8
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.8e-09 67.8 58 63.8
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.8e-09 67.8 58 63.8
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 2.4e-09 67.4 58 63.8
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.1e-09 67.0 85 50.6
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.2e-08 65.1 58 62.1
Sabra02G0024500 Salix brachista HOM05D001587 ORTHO05D037360 1.1e-06 58.5 38 76.3


User provided reference genes

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