Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35252H Brassica oleracea HOM05D004154 ORTHO05D032736 1.1e-54 216.5 113 100.0
C06p01160 Brassica napus HOM05D004154 ORTHO05D032736 2.4e-54 215.3 113 99.1
BcaC08g42892 Brassica carinata HOM05D004154 ORTHO05D032736 4.7e-42 174.5 110 86.4
BcaB01g00238 Brassica carinata HOM05D004154 ORTHO05D004988 1.0e-20 103.6 61 83.6
A01p15110 Brassica napus HOM05D004154 ORTHO05D004988 2.4e-14 82.4 80 56.2
BraA01t01449Z Brassica rapa HOM05D004154 ORTHO05D004988 2.4e-14 82.4 80 56.2
AT4G23800 Arabidopsis thaliana HOM05D004154 ORTHO05D004988 3.2e-14 82.0 80 55.0
BcaC09g50947 Brassica carinata HOM05D004154 ORTHO05D004988 5.4e-14 81.3 80 55.0
C01p19010 Brassica napus HOM05D004154 ORTHO05D004988 5.4e-14 81.3 80 55.0
BolC1t01827H Brassica oleracea HOM05D004154 ORTHO05D004988 5.4e-14 81.3 80 55.0
AL7G29550 Arabidopsis lyrata HOM05D004154 ORTHO05D004988 7.0e-14 80.9 80 53.8
BcaNung01086 Brassica carinata HOM05D004154 ORTHO05D004988 9.2e-14 80.5 80 55.0
Sp7g21760 Schrenkiella parvula HOM05D004154 ORTHO05D004988 1.6e-13 79.7 80 53.8
Thhalv10025168m.g Eutrema salsugineum HOM05D004154 ORTHO05D004988 1.0e-12 77.0 80 53.8
Carub.0007s1732 Capsella rubella HOM05D004154 ORTHO05D004988 3.0e-12 75.5 80 51.2
CARHR231190 Cardamine hirsuta HOM05D004154 ORTHO05D004988 4.3e-11 71.6 80 47.5
Thhalv10028648m.g Eutrema salsugineum HOM05D004154 ORTHO05D004988 9.5e-11 70.5 78 51.3
Aa31LG6G7020 Aethionema arabicum HOM05D004154 ORTHO05D004988 1.2e-10 70.1 80 47.5
BcaC04g21100 Brassica carinata HOM05D004154 ORTHO05D004988 8.1e-10 67.4 80 47.5
C09p35690 Brassica napus HOM05D004154 ORTHO05D004988 8.1e-10 67.4 80 47.5
BolC9t56405H Brassica oleracea HOM05D004154 ORTHO05D004988 8.1e-10 67.4 80 47.5
Sp6g06370 Schrenkiella parvula HOM05D004154 ORTHO05D004988 1.1e-09 67.0 78 48.7
Aa31LG5G23780 Aethionema arabicum HOM05D004154 ORTHO05D004988 2.3e-09 65.9 80 47.5
A09p28160 Brassica napus HOM05D004154 ORTHO05D004988 2.3e-09 65.9 80 46.2
BraA09t38379Z Brassica rapa HOM05D004154 ORTHO05D004988 2.3e-09 65.9 80 46.2
AT4G11080 Arabidopsis thaliana HOM05D004154 ORTHO05D004988 5.2e-09 64.7 78 47.4
CARHR255520 Cardamine hirsuta HOM05D004154 ORTHO05D004988 6.8e-09 64.3 78 47.4
AL6G45220 Arabidopsis lyrata HOM05D004154 ORTHO05D004988 2.6e-08 62.4 78 46.2
THA.LOC104806434 Tarenaya hassleriana HOM05D004154 ORTHO05D004988 2.6e-08 62.4 78 46.2
Potri.001G093700 Populus trichocarpa HOM05D004154 ORTHO05D004988 4.4e-08 61.6 81 43.2
Carub.0006s2985 Capsella rubella HOM05D004154 ORTHO05D004988 5.8e-08 61.2 78 43.6
Glyma.08G021700 Glycine max HOM05D004154 ORTHO05D004988 7.5e-08 60.8 80 43.8
VMungo0251G3674 Vigna mungo HOM05D004154 ORTHO05D004988 7.5e-08 60.8 82 42.7
Ca_17492_v3 Cicer arietinum L. HOM05D004154 ORTHO05D004988 1.7e-07 59.7 56 50.0
Glyma.05G215500 Glycine max HOM05D004154 ORTHO05D004988 1.7e-07 59.7 80 43.8
Potri.003G138000 Populus trichocarpa HOM05D004154 ORTHO05D004988 1.7e-07 59.7 80 42.5
Lalb_Chr05g0224221 Lupinus albus HOM05D004154 ORTHO05D004988 2.2e-07 59.3 80 41.2
CiPaw.11G123500 Carya illinoinensis HOM05D004154 ORTHO05D004988 2.9e-07 58.9 80 42.5
COL.COLO4_21713 Corchorus olitorius HOM05D004154 ORTHO05D004988 2.9e-07 58.9 100 39.0
Dinv38854 Davidia involucrata HOM05D000337 ORTHO05D000297 2.9e-07 58.9 75 45.3
arahy.Tifrunner.gnm1.ann1.Y783I6 Arachis hypogaea HOM05D004154 ORTHO05D004988 3.7e-07 58.5 80 40.0
MSTRG.25659 Avicennia marina HOM05D004154 ORTHO05D004988 3.7e-07 58.5 80 42.5
SalBow1G2286 Salvia bowleyana HOM05D004154 ORTHO05D004988 3.7e-07 58.5 80 42.5
SalBow1G6205 Salvia bowleyana HOM05D004154 ORTHO05D004988 3.7e-07 58.5 80 42.5
Atru.chr2.763 Acer truncatum HOM05D004154 ORTHO05D004988 4.9e-07 58.2 80 42.5
FvH4_5g04120 Fragaria vesca HOM05D004154 ORTHO05D004988 4.9e-07 58.2 81 43.2
FAN04G1279 Fragaria x ananassa HOM05D004154 ORTHO05D004988 4.9e-07 58.2 81 43.2
FAN04G2754 Fragaria x ananassa HOM05D004154 ORTHO05D004988 4.9e-07 58.2 81 43.2
FAN18G0035 Fragaria x ananassa HOM05D004154 ORTHO05D004988 4.9e-07 58.2 81 43.2
FAN18G2617 Fragaria x ananassa HOM05D004154 ORTHO05D004988 4.9e-07 58.2 81 43.2
arahy.Tifrunner.gnm1.ann1.1D56YB Arachis hypogaea HOM05D004154 ORTHO05D004988 6.4e-07 57.8 56 48.2
Haze_08653 Corylus avellana HOM05D004154 ORTHO05D004988 6.4e-07 57.8 78 42.3
Duzib068G1416 Durio zibethinus HOM05D004154 ORTHO05D004988 6.4e-07 57.8 80 42.5
Cfa012835 Carpinus fangiana HOM05D004154 ORTHO05D004988 8.3e-07 57.4 80 41.2
Cpa.g.sc122.41 Carica papaya HOM05D004154 ORTHO05D004988 1.1e-06 57.0 80 41.2
FAN13G2696 Fragaria x ananassa HOM05D004154 ORTHO05D004988 1.1e-06 57.0 79 43.0
Duzib205G2047 Durio zibethinus HOM05D004154 ORTHO05D004988 1.4e-06 56.6 75 45.3
Prupe.5G115800 Prunus persica HOM05D004154 ORTHO05D004988 1.4e-06 56.6 80 42.5
Glyma.01G060600 Glycine max HOM05D004154 ORTHO05D004988 1.9e-06 56.2 41 58.5
Thecc.03G293700 Theobroma cacao HOM05D004154 ORTHO05D004988 1.9e-06 56.2 80 42.5
Ciclev10023918m.g Citrus clementina HOM05D004154 ORTHO05D004988 2.4e-06 55.8 54 50.0
Atru.chr9.2030 Acer truncatum HOM05D004154 ORTHO05D004988 3.2e-06 55.5 55 49.1
Atru.chr9.2037 Acer truncatum HOM05D004154 ORTHO05D001448 3.2e-06 55.5 55 49.1
CSS0019694 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 3.2e-06 55.5 101 37.6
Cc08_g15820 Coffea canephora HOM05D004154 ORTHO05D004988 3.2e-06 55.5 78 43.6
MBI07_g24338_MAGBIO Magnolia biondii HOM05D004154 ORTHO05D004988 3.2e-06 55.5 80 40.0
Lj8A210T88 Lonicera japonica HOM05D004154 ORTHO05D004988 7.1e-06 54.3 41 58.5
Lj4g0021447 Lotus japonicus HOM05D004154 ORTHO05D004988 7.1e-06 54.3 80 41.2
Sabra01G0069600 Salix brachista HOM05D004154 ORTHO05D004988 7.1e-06 54.3 95 38.9


User provided reference genes

Program Settings