Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t35018H Brassica oleracea HOM05D003802 ORTHO05D004829 6.2e-114 414.1 200 100.0
BolC5t35016H Brassica oleracea HOM05D003802 ORTHO05D004829 3.5e-109 398.3 200 98.0
C05p37270 Brassica napus HOM05D003802 ORTHO05D004829 3.8e-103 378.3 207 89.9
BraA09t40009Z Brassica rapa HOM05D003802 ORTHO05D004829 1.1e-65 253.8 188 74.5
BcaC05g29883 Brassica carinata HOM05D003802 ORTHO05D004829 3.1e-65 252.3 127 96.1
BcaC06g36577 Brassica carinata HOM05D003802 ORTHO05D004829 6.5e-63 244.6 127 92.9
BcaC05g27741 Brassica carinata HOM05D003802 ORTHO05D004829 1.1e-62 243.8 127 92.9
BcaB01g00473 Brassica carinata HOM05D003802 ORTHO05D004829 9.7e-59 230.7 126 91.3
A09p44980 Brassica napus HOM05D003802 ORTHO05D004829 9.7e-59 230.7 126 91.3
C08p27060 Brassica napus HOM05D003802 ORTHO05D004829 9.7e-59 230.7 126 91.3
BolC8t50321H Brassica oleracea HOM05D003802 ORTHO05D004829 9.7e-59 230.7 126 91.3
BraA09t39958Z Brassica rapa HOM05D003802 ORTHO05D004829 9.7e-59 230.7 126 91.3
BcaB01g00413 Brassica carinata HOM05D003802 ORTHO05D004829 2.8e-58 229.2 126 90.5
BcaC02g09302 Brassica carinata HOM05D003802 ORTHO05D004829 1.2e-56 223.8 126 87.3
C04p41140 Brassica napus HOM05D003802 ORTHO05D004829 1.2e-56 223.8 126 87.3
BolC4t25697H Brassica oleracea HOM05D003802 ORTHO05D004829 1.2e-56 223.8 126 87.3
BcaB02g08601 Brassica carinata HOM05D003802 ORTHO05D004829 2.7e-56 222.6 126 86.5
A04p07490 Brassica napus HOM05D003802 ORTHO05D004829 5.9e-56 221.5 126 86.5
BraA04t16444Z Brassica rapa HOM05D003802 ORTHO05D004829 5.9e-56 221.5 126 86.5
Sp5g10430 Schrenkiella parvula HOM05D003802 ORTHO05D004829 2.1e-53 213.0 126 83.3
Thhalv10010388m.g Eutrema salsugineum HOM05D003802 ORTHO05D004829 1.0e-52 210.7 126 81.7
AT3G51840 Arabidopsis thaliana HOM05D003802 ORTHO05D004829 5.2e-52 208.4 126 81.0
AL5G32300 Arabidopsis lyrata HOM05D003802 ORTHO05D004829 6.8e-52 208.0 126 80.2
Carub.0005s1819 Capsella rubella HOM05D003802 ORTHO05D004829 2.0e-51 206.5 126 81.7
THA.LOC104805957 Tarenaya hassleriana HOM05D003802 ORTHO05D004829 3.7e-50 202.2 126 78.6
CARHR161470 Cardamine hirsuta HOM05D003802 ORTHO05D004829 1.1e-49 200.7 126 77.8
FvH4_6g11280 Fragaria vesca HOM05D003802 ORTHO05D004829 5.9e-48 194.9 141 69.5
FAN14G2331 Fragaria x ananassa HOM05D003802 ORTHO05D004829 5.9e-48 194.9 141 69.5
FAN14G4713 Fragaria x ananassa HOM05D003802 ORTHO05D004829 5.9e-48 194.9 141 69.5
Aa31LG5G23700 Aethionema arabicum HOM05D003802 ORTHO05D004829 1.3e-47 193.7 126 75.4
CSS0032028 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 1.3e-47 193.7 141 65.2
CSS0036674 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 1.3e-47 193.7 141 65.2
FAN05G2463 Fragaria x ananassa HOM05D003802 ORTHO05D004829 2.3e-47 193.0 140 69.3
Eucgr.A00529 Eucalyptus grandis HOM05D003802 ORTHO05D004829 2.9e-47 192.6 126 74.6
Prupe.6G279200 Prunus persica HOM05D003802 ORTHO05D004829 5.0e-47 191.8 140 68.6
Dinv01494 Davidia involucrata HOM05D003802 ORTHO05D004829 6.5e-47 191.4 129 71.3
Glyma.07G151500 Glycine max HOM05D003802 ORTHO05D004829 8.6e-47 191.0 126 72.2
Cpa.g.sc11.100 Carica papaya HOM05D003802 ORTHO05D004829 1.1e-46 190.7 141 66.7
Manes.08G093200 Manihot esculenta HOM05D003802 ORTHO05D004829 1.5e-46 190.3 126 71.4
Cfa017192 Carpinus fangiana HOM05D003802 ORTHO05D004829 3.3e-46 189.1 126 71.4
Haze_21019 Corylus avellana HOM05D003802 ORTHO05D004829 3.3e-46 189.1 126 71.4
Peaxi162Scf00009g00163 Petunia axillaris HOM05D003802 ORTHO05D004829 5.5e-46 188.3 140 67.1
MD04G1155700 Malus domestica HOM05D003802 ORTHO05D004829 7.2e-46 188.0 141 67.4
TAR369G0012 Trochodendron aralioides HOM05D003802 ORTHO05D004829 1.2e-45 187.2 126 72.2
RcHm_v2.0_Chr3g0462821 Rosa chinensis HOM05D003802 ORTHO05D004829 1.6e-45 186.8 140 67.9
Lj3C951G1 Lonicera japonica HOM05D003802 ORTHO05D004829 2.8e-45 186.0 126 71.4
GSVIVG01011175001 Vitis vinifera HOM05D003802 ORTHO05D004829 2.8e-45 186.0 126 70.6
Migut.J00147 Erythranthe guttata HOM05D003802 ORTHO05D004829 4.7e-45 185.3 140 68.6
COL.COLO4_14514 Corchorus olitorius HOM05D003802 ORTHO05D004829 6.1e-45 184.9 126 72.2
Glyma.18G202800 Glycine max HOM05D003802 ORTHO05D004829 6.1e-45 184.9 126 70.6
Lj3g0007770 Lotus japonicus HOM05D003802 ORTHO05D004829 6.1e-45 184.9 126 69.8
SalBow5G2900 Salvia bowleyana HOM05D003802 ORTHO05D004829 6.1e-45 184.9 140 70.0
SalBow5G3730 Salvia bowleyana HOM05D003802 ORTHO05D004829 6.1e-45 184.9 140 70.0
CiPaw.10G157200 Carya illinoinensis HOM05D003802 ORTHO05D004829 8.0e-45 184.5 155 58.7
PGR031G1102 Punica granatum HOM05D003802 ORTHO05D004829 8.0e-45 184.5 126 70.6
Rhsim04G0127300 Rhododendron simsii HOM05D003802 ORTHO05D004829 8.0e-45 184.5 123 69.9
SalBow5G1244 Salvia bowleyana HOM05D003802 ORTHO05D004829 8.0e-45 184.5 140 69.3
PGSC0003DMG400011023 Solanum tuberosum HOM05D003802 ORTHO05D004829 8.0e-45 184.5 141 64.5
TWI74G0069 Tripterygium wilfordii HOM05D003802 ORTHO05D004829 8.0e-45 184.5 126 69.8
Hma1.2p1_0362F.1_g136390 Hydrangea macrophylla HOM05D003802 ORTHO05D004829 1.0e-44 184.1 126 71.4
Lalb_Chr12g0207031 Lupinus albus HOM05D003802 ORTHO05D004829 1.0e-44 184.1 126 72.2
Ciclev10011934m.g Citrus clementina HOM05D003802 ORTHO05D004829 1.4e-44 183.7 126 71.4
HanXRQChr11g0331731 Helianthus annuus HOM05D003802 ORTHO05D004829 1.4e-44 183.7 126 69.8
Medtr7g068850 Medicago truncatula HOM05D003802 ORTHO05D004829 1.4e-44 183.7 126 69.0
QL07p035231 Quercus lobata HOM05D003802 ORTHO05D004829 1.4e-44 183.7 140 65.0
DCAR_015400 Daucus carota HOM05D003802 ORTHO05D004829 1.8e-44 183.3 126 70.6
Nitab4.5_0000119g0070 Nicotiana tabacum HOM05D003802 ORTHO05D004829 1.8e-44 183.3 140 65.0
MSTRG.5566 Avicennia marina HOM05D003802 ORTHO05D004829 2.3e-44 183.0 129 69.0
CAN.G823.1 Capsicum annuum HOM05D003802 ORTHO05D004829 3.0e-44 182.6 140 63.6
Solyc10g085200.2 Solanum lycopersicum HOM05D003802 ORTHO05D004829 3.0e-44 182.6 141 64.5
EL10Ac5g12547 Beta vulgaris HOM05D003802 ORTHO05D004829 4.0e-44 182.2 126 71.4
CSS0028267 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 4.0e-44 182.2 123 69.9
Gohir.D09G161600 Gossypium hirsutum HOM05D003802 ORTHO05D004829 4.0e-44 182.2 126 71.4
Gorai.006G183300 Gossypium raimondii HOM05D003802 ORTHO05D004829 4.0e-44 182.2 126 71.4
Thecc.05G013900 Theobroma cacao HOM05D003802 ORTHO05D004829 4.0e-44 182.2 126 70.6
Aa31LG10G9050 Aethionema arabicum HOM05D003802 ORTHO05D004829 5.2e-44 181.8 154 64.3
Sc07g0006670 Simmondsia chinensis HOM05D003802 ORTHO05D004829 5.2e-44 181.8 120 72.5
SGA_v2.0_scaffold95G28857 Striga asiatica HOM05D003802 ORTHO05D004829 5.2e-44 181.8 126 71.4
TWI53G0442 Tripterygium wilfordii HOM05D003802 ORTHO05D004829 5.2e-44 181.8 126 67.5
Sopen10g034670 Solanum pennellii HOM05D003802 ORTHO05D004829 6.8e-44 181.4 141 64.5
Sabra16G0114200 Salix brachista HOM05D003802 ORTHO05D004829 8.9e-44 181.0 141 64.5
Dinv09291 Davidia involucrata HOM05D003802 ORTHO05D004829 1.2e-43 180.6 129 69.0
Potri.016G118000 Populus trichocarpa HOM05D003802 ORTHO05D004829 1.5e-43 180.3 141 63.1
Nn2g13152 Nelumbo nucifera HOM05D003802 ORTHO05D004829 2.0e-43 179.9 126 67.5
arahy.Tifrunner.gnm1.ann1.0003EL Arachis hypogaea HOM05D003802 ORTHO05D004829 3.4e-43 179.1 145 62.1
arahy.Tifrunner.gnm1.ann1.DW8YXR Arachis hypogaea HOM05D003802 ORTHO05D004829 3.4e-43 179.1 145 62.1
MBI03_g24259_MAGBIO Magnolia biondii HOM05D003802 ORTHO05D004829 3.4e-43 179.1 126 69.8
Potri.006G101800 Populus trichocarpa HOM05D003802 ORTHO05D004829 3.4e-43 179.1 141 65.2
Sed0011339 Sechium edule HOM05D003802 ORTHO05D004829 4.4e-43 178.7 126 69.8
Solyc10g076600.2 Solanum lycopersicum HOM05D003802 ORTHO05D004829 4.4e-43 178.7 126 69.0
Sopen10g028240 Solanum pennellii HOM05D003802 ORTHO05D004829 5.7e-43 178.3 126 69.0
PGSC0003DMG401019176 Solanum tuberosum HOM05D003802 ORTHO05D004829 5.7e-43 178.3 126 68.3
AUR62030803 Chenopodium quinoa HOM05D003802 ORTHO05D004829 7.5e-43 177.9 126 69.8
Psat3g127160 Pisum sativum HOM05D003802 ORTHO05D004829 7.5e-43 177.9 126 68.3
CsaV3_3G033630 Cucumis sativus L. HOM05D003802 ORTHO05D004829 1.3e-42 177.2 141 63.1
Hund10994 Selenicereus undatus HOM05D003802 ORTHO05D004829 1.3e-42 177.2 139 64.0
TPR.G8416 Trifolium pratense HOM05D003802 ORTHO05D004829 1.3e-42 177.2 126 67.5
CAN.G243.8 Capsicum annuum HOM05D003802 ORTHO05D004829 1.7e-42 176.8 140 63.6
MELO3C009153.2 Cucumis melo HOM05D003802 ORTHO05D004829 1.7e-42 176.8 126 67.5
ECA236G0063 Erigeron canadensis HOM05D003802 ORTHO05D004829 1.7e-42 176.8 126 68.3
Gohir.A09G166000 Gossypium hirsutum HOM05D003802 ORTHO05D004829 2.8e-42 176.0 123 69.9
Oeu038764.2 Olea europaea HOM05D003802 ORTHO05D004829 2.8e-42 176.0 160 60.0
Cc06_g01200 Coffea canephora HOM05D003802 ORTHO05D004829 3.7e-42 175.6 126 65.9
Zm00001eb282120 Zea mays HOM05D003802 ORTHO05D004829 4.9e-42 175.3 145 60.7
Nitab4.5_0004107g0050 Nicotiana tabacum HOM05D003802 ORTHO05D004829 6.3e-42 174.9 140 62.9
Aqoxy4G02528 Aquilegia oxysepala HOM05D003802 ORTHO05D004829 1.1e-41 174.1 141 63.1
CDE06G0316 Ceratophyllum demersum HOM05D003802 ORTHO05D004829 1.1e-41 174.1 126 65.9
Peaxi162Scf00014g00222 Petunia axillaris HOM05D003802 ORTHO05D004829 1.1e-41 174.1 140 62.9
Os01g0159400 Oryza sativa ssp. japonica HOM05D003802 ORTHO05D004829 4.1e-41 172.2 145 59.3
Atru.chr8.2601 Acer truncatum HOM05D003802 ORTHO05D004829 7.0e-41 171.4 126 65.1
BcaC04g20315 Brassica carinata HOM05D003802 ORTHO05D004829 9.2e-41 171.0 152 65.8
Lalb_Chr03g0043201 Lupinus albus HOM05D003802 ORTHO05D004829 9.2e-41 171.0 126 62.7
Nitab4.5_0000770g0030 Nicotiana tabacum HOM05D003802 ORTHO05D004829 9.2e-41 171.0 165 54.5
PSO339G3660 Papaver somniferum HOM05D003802 ORTHO05D004829 9.2e-41 171.0 126 66.7
PSO384G3434 Papaver somniferum HOM05D003802 ORTHO05D004829 9.2e-41 171.0 126 66.7
ClCG10G022250 Citrullus lanatus HOM05D003802 ORTHO05D004829 1.2e-40 170.6 151 59.6
Os05g0163700 Oryza sativa ssp. japonica HOM05D003802 ORTHO05D004829 1.2e-40 170.6 145 58.6
HPP92_006763 Vanilla planifolia HOM05D003802 ORTHO05D004829 1.6e-40 170.2 126 65.1
Phvul.010G076000 Phaseolus vulgaris HOM05D003802 ORTHO05D004829 2.0e-40 169.9 126 65.1
Lj1g0026208 Lotus japonicus HOM05D003802 ORTHO05D004829 7.8e-40 167.9 140 59.3
ATR0681G264 Amborella trichopoda HOM05D003802 ORTHO05D004829 1.7e-39 166.8 126 62.7
CSS0000012 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 2.9e-39 166.0 129 62.0
Glyma.03G056400 Glycine max HOM05D003802 ORTHO05D004829 5.0e-39 165.2 152 57.2
CSS0006548 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 6.6e-39 164.9 129 61.2
CSS0018174 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 6.6e-39 164.9 129 61.2
Ciclev10013381m.g Citrus clementina HOM05D003802 ORTHO05D004829 8.6e-39 164.5 127 63.0
Zm00001eb123620 Zea mays HOM05D003802 ORTHO05D004829 8.6e-39 164.5 145 56.6
Ciclev10013617m.g Citrus clementina HOM05D003802 ORTHO05D004829 3.3e-38 162.5 127 65.4
Gorai.001G247400 Gossypium raimondii HOM05D003802 ORTHO05D004829 5.6e-38 161.8 126 64.3
SMO118G0494 Selaginella moellendorffii HOM05D003802 ORTHO05D004829 9.5e-38 161.0 134 60.4
Gohir.D13G095300 Gossypium hirsutum HOM05D003802 ORTHO05D004829 1.2e-37 160.6 126 64.3
VMungo0331G1951 Vigna mungo HOM05D003802 ORTHO05D004829 1.2e-37 160.6 121 66.1
Gohir.A13G085701 Gossypium hirsutum HOM05D003802 ORTHO05D004829 3.6e-37 159.1 126 64.3
MD12G1170600 Malus domestica HOM05D003802 ORTHO05D004829 3.6e-37 159.1 122 67.2
AagrBONN_evm.TU.Sc2ySwM_228.349 Anthoceros agrestis HOM05D003802 ORTHO05D004829 4.7e-37 158.7 126 60.3
vmacro08883 Vaccinium macrocarpon HOM05D003802 ORTHO05D004829 4.7e-37 158.7 103 71.8
Duzib093G0744 Durio zibethinus HOM05D003802 ORTHO05D004829 1.4e-36 157.1 106 71.7
Pp3c10_910 Physcomitrium patens HOM05D003802 ORTHO05D004829 5.2e-36 155.2 126 59.5
Pp3c3_8340 Physcomitrium patens HOM05D003802 ORTHO05D004829 7.5e-35 151.4 126 56.3
Mapoly0037s0018 Marchantia polymorpha HOM05D003802 ORTHO05D004829 1.3e-34 150.6 116 61.2
Lj3C950G12 Lonicera japonica HOM05D003802 ORTHO05D004829 1.7e-34 150.2 106 70.8
BcaC04g20180 Brassica carinata HOM05D003802 ORTHO05D004829 4.9e-34 148.7 127 66.9
A09p45480 Brassica napus HOM05D003802 ORTHO05D020190 6.4e-34 148.3 81 91.4
CBR_g4338 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-32 143.7 121 58.7
Cre16.g695100 Chlamydomonas reinhardtii HOM05D003802 ORTHO05D004829 2.7e-32 142.9 150 50.0
CiPaw.09G210700 Carya illinoinensis HOM05D003802 ORTHO05D004829 4.6e-32 142.1 113 55.8
Actinidia20743 Actinidia chinensis HOM05D003802 ORTHO05D004829 1.5e-30 137.1 97 69.1
Lsat_1_v5_gn_8_101681 Lactuca sativa HOM05D003802 ORTHO05D004829 1.9e-30 136.7 110 60.9
C09p45050 Brassica napus HOM05D003802 ORTHO05D020190 9.5e-30 134.4 68 94.1
SEGI_03618 Sequoiadendron giganteum HOM05D003802 ORTHO05D004829 4.7e-29 132.1 106 56.6
MD12G1169900 Malus domestica HOM05D003802 ORTHO05D004829 1.4e-28 130.6 97 70.1
BcaC05g29879 Brassica carinata HOM05D003802 ORTHO05D004829 3.1e-28 129.4 82 79.3
unitig_736.g22759 Utricularia gibba HOM05D003802 ORTHO05D004829 6.8e-28 128.3 82 74.4
Duzib106G0050 Durio zibethinus HOM05D003802 ORTHO05D004829 1.1e-25 120.9 132 55.3
CSS0035995 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 4.6e-24 115.5 129 51.9
A06p28940 Brassica napus HOM05D003802 ORTHO05D020190 2.5e-22 109.8 81 70.4
BraA06t25839Z Brassica rapa HOM05D003802 ORTHO05D020190 2.5e-22 109.8 81 70.4
BraA03t15488Z Brassica rapa HOM05D003802 ORTHO05D020190 2.1e-21 106.7 72 73.6
Ah.12g058740 Amaranthus hybridus HOM05D003802 ORTHO05D004829 6.8e-20 101.7 147 44.9
AagrBONN_evm.TU.Sc2ySwM_228.298 Anthoceros agrestis HOM05D003802 ORTHO05D004829 4.9e-18 95.5 74 58.1
BraA03t15487Z Brassica rapa HOM05D003802 ORTHO05D043171 3.2e-17 92.8 56 78.6
FAN09G1187 Fragaria x ananassa HOM05D003802 ORTHO05D004829 7.1e-17 91.7 113 46.9
MBI18_g32053_MAGBIO Magnolia biondii HOM05D003802 ORTHO05D004829 4.7e-13 79.0 68 60.3
MD00G1080100 Malus domestica HOM05D003802 ORTHO05D004829 3.1e-12 76.3 68 57.4
Nn2g10872 Nelumbo nucifera HOM05D003802 ORTHO05D020190 7.6e-11 71.6 55 61.8
BolC9t57380H Brassica oleracea HOM05D003802 ORTHO05D043171 1.2e-08 64.3 31 87.1
VMungo1383G0297 Vigna mungo HOM05D003802 ORTHO05D004829 2.1e-08 63.5 47 68.1


User provided reference genes

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