Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t35016H Brassica oleracea HOM05D003802 ORTHO05D004829 6.3e-111 404.1 197 100.0
BolC5t35018H Brassica oleracea HOM05D003802 ORTHO05D004829 5.9e-109 397.5 200 98.0
C05p37270 Brassica napus HOM05D003802 ORTHO05D004829 5.6e-99 364.4 207 88.9
BraA09t40009Z Brassica rapa HOM05D003802 ORTHO05D004829 1.9e-67 259.6 185 76.2
BcaC05g29883 Brassica carinata HOM05D003802 ORTHO05D004829 3.0e-60 235.7 127 92.9
BcaC06g36577 Brassica carinata HOM05D003802 ORTHO05D004829 9.6e-59 230.7 127 91.3
BcaC05g27741 Brassica carinata HOM05D003802 ORTHO05D004829 1.6e-58 229.9 127 91.3
BcaB01g00473 Brassica carinata HOM05D003802 ORTHO05D004829 1.4e-54 216.9 126 89.7
A09p44980 Brassica napus HOM05D003802 ORTHO05D004829 1.4e-54 216.9 126 89.7
C08p27060 Brassica napus HOM05D003802 ORTHO05D004829 1.4e-54 216.9 126 89.7
BolC8t50321H Brassica oleracea HOM05D003802 ORTHO05D004829 1.4e-54 216.9 126 89.7
BraA09t39958Z Brassica rapa HOM05D003802 ORTHO05D004829 1.4e-54 216.9 126 89.7
BcaB01g00413 Brassica carinata HOM05D003802 ORTHO05D004829 4.2e-54 215.3 126 88.9
BcaC02g09302 Brassica carinata HOM05D003802 ORTHO05D004829 1.8e-52 209.9 126 85.7
C04p41140 Brassica napus HOM05D003802 ORTHO05D004829 1.8e-52 209.9 126 85.7
BolC4t25697H Brassica oleracea HOM05D003802 ORTHO05D004829 1.8e-52 209.9 126 85.7
BcaB02g08601 Brassica carinata HOM05D003802 ORTHO05D004829 3.9e-52 208.8 126 84.9
A04p07490 Brassica napus HOM05D003802 ORTHO05D004829 8.7e-52 207.6 126 84.9
BraA04t16444Z Brassica rapa HOM05D003802 ORTHO05D004829 8.7e-52 207.6 126 84.9
Sp5g10430 Schrenkiella parvula HOM05D003802 ORTHO05D004829 3.1e-49 199.1 126 81.7
Thhalv10010388m.g Eutrema salsugineum HOM05D003802 ORTHO05D004829 1.5e-48 196.8 126 80.2
AT3G51840 Arabidopsis thaliana HOM05D003802 ORTHO05D004829 7.6e-48 194.5 126 79.4
AL5G32300 Arabidopsis lyrata HOM05D003802 ORTHO05D004829 1.0e-47 194.1 126 78.6
Carub.0005s1819 Capsella rubella HOM05D003802 ORTHO05D004829 2.9e-47 192.6 126 80.2
THA.LOC104805957 Tarenaya hassleriana HOM05D003802 ORTHO05D004829 5.5e-46 188.3 126 77.0
CARHR161470 Cardamine hirsuta HOM05D003802 ORTHO05D004829 1.6e-45 186.8 126 76.2
FvH4_6g11280 Fragaria vesca HOM05D003802 ORTHO05D004829 1.1e-43 180.6 141 67.4
FAN14G2331 Fragaria x ananassa HOM05D003802 ORTHO05D004829 1.1e-43 180.6 141 67.4
FAN14G4713 Fragaria x ananassa HOM05D003802 ORTHO05D004829 1.1e-43 180.6 141 67.4
CSS0032028 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 1.5e-43 180.3 141 63.8
CSS0036674 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 1.5e-43 180.3 141 63.8
Eucgr.A00529 Eucalyptus grandis HOM05D003802 ORTHO05D004829 1.9e-43 179.9 126 73.0
Aa31LG5G23700 Aethionema arabicum HOM05D003802 ORTHO05D004829 2.5e-43 179.5 126 73.0
FAN05G2463 Fragaria x ananassa HOM05D003802 ORTHO05D004829 4.3e-43 178.7 140 67.1
Prupe.6G279200 Prunus persica HOM05D003802 ORTHO05D004829 7.4e-43 177.9 140 67.1
Glyma.07G151500 Glycine max HOM05D003802 ORTHO05D004829 1.6e-42 176.8 126 69.8
Cpa.g.sc11.100 Carica papaya HOM05D003802 ORTHO05D004829 2.1e-42 176.4 141 64.5
Dinv01494 Davidia involucrata HOM05D003802 ORTHO05D004829 2.1e-42 176.4 129 69.0
Manes.08G093200 Manihot esculenta HOM05D003802 ORTHO05D004829 2.8e-42 176.0 126 69.0
Peaxi162Scf00009g00163 Petunia axillaris HOM05D003802 ORTHO05D004829 3.7e-42 175.6 140 65.7
Cfa017192 Carpinus fangiana HOM05D003802 ORTHO05D004829 6.2e-42 174.9 126 69.0
Haze_21019 Corylus avellana HOM05D003802 ORTHO05D004829 6.2e-42 174.9 126 69.0
TAR369G0012 Trochodendron aralioides HOM05D003802 ORTHO05D004829 1.8e-41 173.3 126 70.6
MD04G1155700 Malus domestica HOM05D003802 ORTHO05D004829 2.4e-41 172.9 141 65.2
PGR031G1102 Punica granatum HOM05D003802 ORTHO05D004829 2.4e-41 172.9 126 69.0
Migut.J00147 Erythranthe guttata HOM05D003802 ORTHO05D004829 3.1e-41 172.6 140 67.1
Lj3C951G1 Lonicera japonica HOM05D003802 ORTHO05D004829 3.1e-41 172.6 126 69.8
RcHm_v2.0_Chr3g0462821 Rosa chinensis HOM05D003802 ORTHO05D004829 3.1e-41 172.6 140 65.7
Rhsim04G0127300 Rhododendron simsii HOM05D003802 ORTHO05D004829 4.0e-41 172.2 123 69.1
SalBow5G1244 Salvia bowleyana HOM05D003802 ORTHO05D004829 5.3e-41 171.8 140 67.9
PGSC0003DMG400011023 Solanum tuberosum HOM05D003802 ORTHO05D004829 5.3e-41 171.8 141 63.1
GSVIVG01011175001 Vitis vinifera HOM05D003802 ORTHO05D004829 5.3e-41 171.8 126 68.3
HanXRQChr11g0331731 Helianthus annuus HOM05D003802 ORTHO05D004829 6.9e-41 171.4 126 69.0
COL.COLO4_14514 Corchorus olitorius HOM05D003802 ORTHO05D004829 1.2e-40 170.6 126 69.8
DCAR_015400 Daucus carota HOM05D003802 ORTHO05D004829 1.2e-40 170.6 126 69.0
Glyma.18G202800 Glycine max HOM05D003802 ORTHO05D004829 1.2e-40 170.6 126 68.3
Lj3g0007770 Lotus japonicus HOM05D003802 ORTHO05D004829 1.2e-40 170.6 126 67.5
Medtr7g068850 Medicago truncatula HOM05D003802 ORTHO05D004829 1.2e-40 170.6 126 67.5
TWI74G0069 Tripterygium wilfordii HOM05D003802 ORTHO05D004829 1.2e-40 170.6 126 68.3
MSTRG.5566 Avicennia marina HOM05D003802 ORTHO05D004829 1.5e-40 170.2 129 67.4
CiPaw.10G157200 Carya illinoinensis HOM05D003802 ORTHO05D004829 1.5e-40 170.2 155 56.8
Lalb_Chr12g0207031 Lupinus albus HOM05D003802 ORTHO05D004829 1.5e-40 170.2 126 70.6
BcaC04g20315 Brassica carinata HOM05D003802 ORTHO05D004829 2.0e-40 169.9 152 66.4
CSS0028267 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 2.0e-40 169.9 123 69.1
Ciclev10011934m.g Citrus clementina HOM05D003802 ORTHO05D004829 2.0e-40 169.9 126 69.8
Nitab4.5_0000119g0070 Nicotiana tabacum HOM05D003802 ORTHO05D004829 2.0e-40 169.9 140 63.6
SalBow5G2900 Salvia bowleyana HOM05D003802 ORTHO05D004829 2.0e-40 169.9 140 67.9
SalBow5G3730 Salvia bowleyana HOM05D003802 ORTHO05D004829 2.0e-40 169.9 140 67.9
Solyc10g085200.2 Solanum lycopersicum HOM05D003802 ORTHO05D004829 2.0e-40 169.9 141 63.1
QL07p035231 Quercus lobata HOM05D003802 ORTHO05D004829 2.6e-40 169.5 140 62.9
Hma1.2p1_0362F.1_g136390 Hydrangea macrophylla HOM05D003802 ORTHO05D004829 3.4e-40 169.1 126 69.0
Sc07g0006670 Simmondsia chinensis HOM05D003802 ORTHO05D004829 3.4e-40 169.1 120 70.8
SGA_v2.0_scaffold95G28857 Striga asiatica HOM05D003802 ORTHO05D004829 3.4e-40 169.1 126 69.8
CAN.G823.1 Capsicum annuum HOM05D003802 ORTHO05D004829 4.5e-40 168.7 140 62.1
Sopen10g034670 Solanum pennellii HOM05D003802 ORTHO05D004829 4.5e-40 168.7 141 63.1
Aa31LG10G9050 Aethionema arabicum HOM05D003802 ORTHO05D004829 7.6e-40 167.9 154 63.0
EL10Ac5g12547 Beta vulgaris HOM05D003802 ORTHO05D004829 7.6e-40 167.9 126 69.0
Gohir.D09G161600 Gossypium hirsutum HOM05D003802 ORTHO05D004829 7.6e-40 167.9 126 69.0
Gorai.006G183300 Gossypium raimondii HOM05D003802 ORTHO05D004829 7.6e-40 167.9 126 69.0
Thecc.05G013900 Theobroma cacao HOM05D003802 ORTHO05D004829 7.6e-40 167.9 126 68.3
TWI53G0442 Tripterygium wilfordii HOM05D003802 ORTHO05D004829 1.0e-39 167.5 126 65.1
Nn2g13152 Nelumbo nucifera HOM05D003802 ORTHO05D004829 1.3e-39 167.2 126 65.9
Dinv09291 Davidia involucrata HOM05D003802 ORTHO05D004829 1.7e-39 166.8 129 67.4
Sabra16G0114200 Salix brachista HOM05D003802 ORTHO05D004829 1.7e-39 166.8 141 62.4
Solyc10g076600.2 Solanum lycopersicum HOM05D003802 ORTHO05D004829 2.2e-39 166.4 126 68.3
Potri.016G118000 Populus trichocarpa HOM05D003802 ORTHO05D004829 2.9e-39 166.0 141 61.0
Sed0011339 Sechium edule HOM05D003802 ORTHO05D004829 2.9e-39 166.0 126 68.3
Sopen10g028240 Solanum pennellii HOM05D003802 ORTHO05D004829 2.9e-39 166.0 126 68.3
PGSC0003DMG401019176 Solanum tuberosum HOM05D003802 ORTHO05D004829 2.9e-39 166.0 126 67.5
arahy.Tifrunner.gnm1.ann1.0003EL Arachis hypogaea HOM05D003802 ORTHO05D004829 6.5e-39 164.9 145 60.0
arahy.Tifrunner.gnm1.ann1.DW8YXR Arachis hypogaea HOM05D003802 ORTHO05D004829 6.5e-39 164.9 145 60.0
MBI03_g24259_MAGBIO Magnolia biondii HOM05D003802 ORTHO05D004829 6.5e-39 164.9 126 67.5
Psat3g127160 Pisum sativum HOM05D003802 ORTHO05D004829 6.5e-39 164.9 126 66.7
Potri.006G101800 Populus trichocarpa HOM05D003802 ORTHO05D004829 6.5e-39 164.9 141 63.1
CsaV3_3G033630 Cucumis sativus L. HOM05D003802 ORTHO05D004829 8.4e-39 164.5 141 61.7
TPR.G8416 Trifolium pratense HOM05D003802 ORTHO05D004829 8.4e-39 164.5 126 65.9
CAN.G243.8 Capsicum annuum HOM05D003802 ORTHO05D004829 1.1e-38 164.1 140 62.1
MELO3C009153.2 Cucumis melo HOM05D003802 ORTHO05D004829 1.1e-38 164.1 126 65.9
AUR62030803 Chenopodium quinoa HOM05D003802 ORTHO05D004829 1.4e-38 163.7 126 67.5
Oeu038764.2 Olea europaea HOM05D003802 ORTHO05D004829 1.4e-38 163.7 160 59.4
ECA236G0063 Erigeron canadensis HOM05D003802 ORTHO05D004829 1.9e-38 163.3 126 66.7
Cc06_g01200 Coffea canephora HOM05D003802 ORTHO05D004829 4.2e-38 162.2 126 64.3
Nitab4.5_0004107g0050 Nicotiana tabacum HOM05D003802 ORTHO05D004829 4.2e-38 162.2 140 61.4
Hund10994 Selenicereus undatus HOM05D003802 ORTHO05D004829 4.2e-38 162.2 139 61.9
ClCG10G022250 Citrullus lanatus HOM05D003802 ORTHO05D004829 5.5e-38 161.8 151 58.3
Gohir.A09G166000 Gossypium hirsutum HOM05D003802 ORTHO05D004829 5.5e-38 161.8 123 67.5
Zm00001eb282120 Zea mays HOM05D003802 ORTHO05D004829 9.3e-38 161.0 145 58.6
Os01g0159400 Oryza sativa ssp. japonica HOM05D003802 ORTHO05D004829 1.2e-37 160.6 145 58.6
Peaxi162Scf00014g00222 Petunia axillaris HOM05D003802 ORTHO05D004829 1.2e-37 160.6 140 61.4
Aqoxy4G02528 Aquilegia oxysepala HOM05D003802 ORTHO05D004829 2.1e-37 159.8 141 61.0
CDE06G0316 Ceratophyllum demersum HOM05D003802 ORTHO05D004829 2.1e-37 159.8 126 63.5
Nitab4.5_0000770g0030 Nicotiana tabacum HOM05D003802 ORTHO05D004829 6.1e-37 158.3 165 53.3
Atru.chr8.2601 Acer truncatum HOM05D003802 ORTHO05D004829 7.9e-37 157.9 126 63.5
Lalb_Chr03g0043201 Lupinus albus HOM05D003802 ORTHO05D004829 1.3e-36 157.1 126 61.1
PSO339G3660 Papaver somniferum HOM05D003802 ORTHO05D004829 1.3e-36 157.1 126 65.1
PSO384G3434 Papaver somniferum HOM05D003802 ORTHO05D004829 1.3e-36 157.1 126 65.1
Os05g0163700 Oryza sativa ssp. japonica HOM05D003802 ORTHO05D004829 2.3e-36 156.4 145 56.6
ATR0681G264 Amborella trichopoda HOM05D003802 ORTHO05D004829 3.9e-36 155.6 126 61.9
Phvul.010G076000 Phaseolus vulgaris HOM05D003802 ORTHO05D004829 3.9e-36 155.6 126 62.7
Lj1g0026208 Lotus japonicus HOM05D003802 ORTHO05D004829 5.1e-36 155.2 140 58.6
HPP92_006763 Vanilla planifolia HOM05D003802 ORTHO05D004829 5.1e-36 155.2 126 62.7
A09p45480 Brassica napus HOM05D003802 ORTHO05D020190 1.9e-35 153.3 78 94.9
Zm00001eb123620 Zea mays HOM05D003802 ORTHO05D004829 2.5e-35 152.9 145 55.9
CSS0000012 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 3.3e-35 152.5 129 60.5
CSS0006548 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 3.3e-35 152.5 129 60.5
CSS0018174 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 3.3e-35 152.5 129 60.5
Ciclev10013617m.g Citrus clementina HOM05D003802 ORTHO05D004829 7.4e-35 151.4 127 64.6
Glyma.03G056400 Glycine max HOM05D003802 ORTHO05D004829 9.7e-35 151.0 152 55.3
Ciclev10013381m.g Citrus clementina HOM05D003802 ORTHO05D004829 1.3e-34 150.6 127 61.4
BcaC04g20180 Brassica carinata HOM05D003802 ORTHO05D004829 1.6e-34 150.2 124 69.4
Gorai.001G247400 Gossypium raimondii HOM05D003802 ORTHO05D004829 8.2e-34 147.9 126 62.7
Gohir.D13G095300 Gossypium hirsutum HOM05D003802 ORTHO05D004829 1.8e-33 146.7 126 62.7
SMO118G0494 Selaginella moellendorffii HOM05D003802 ORTHO05D004829 1.8e-33 146.7 134 58.2
AagrBONN_evm.TU.Sc2ySwM_228.349 Anthoceros agrestis HOM05D003802 ORTHO05D004829 2.4e-33 146.4 126 58.7
VMungo0331G1951 Vigna mungo HOM05D003802 ORTHO05D004829 2.4e-33 146.4 121 63.6
vmacro08883 Vaccinium macrocarpon HOM05D003802 ORTHO05D004829 3.1e-33 146.0 103 69.9
Gohir.A13G085701 Gossypium hirsutum HOM05D003802 ORTHO05D004829 5.3e-33 145.2 126 62.7
MD12G1170600 Malus domestica HOM05D003802 ORTHO05D004829 5.3e-33 145.2 122 65.6
Duzib093G0744 Durio zibethinus HOM05D003802 ORTHO05D004829 2.6e-32 142.9 106 68.9
Pp3c10_910 Physcomitrium patens HOM05D003802 ORTHO05D004829 2.6e-32 142.9 126 58.7
Pp3c3_8340 Physcomitrium patens HOM05D003802 ORTHO05D004829 3.8e-31 139.0 126 55.6
Mapoly0037s0018 Marchantia polymorpha HOM05D003802 ORTHO05D004829 6.5e-31 138.3 116 60.3
Lj3C950G12 Lonicera japonica HOM05D003802 ORTHO05D004829 1.9e-30 136.7 106 68.9
CBR_g4338 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-29 132.1 121 57.9
Lsat_1_v5_gn_8_101681 Lactuca sativa HOM05D003802 ORTHO05D004829 1.4e-28 130.6 107 61.7
Cre16.g695100 Chlamydomonas reinhardtii HOM05D003802 ORTHO05D004829 2.3e-28 129.8 150 48.7
BcaC05g29879 Brassica carinata HOM05D003802 ORTHO05D004829 6.7e-28 128.3 82 78.0
CiPaw.09G210700 Carya illinoinensis HOM05D003802 ORTHO05D004829 2.5e-27 126.3 113 53.1
Actinidia20743 Actinidia chinensis HOM05D003802 ORTHO05D004829 9.7e-27 124.4 97 67.0
Duzib106G0050 Durio zibethinus HOM05D003802 ORTHO05D004829 4.8e-26 122.1 130 56.2
CSS0035995 Camellia sinensis var. sinensis HOM05D003802 ORTHO05D004829 8.2e-26 121.3 126 54.0
C09p45050 Brassica napus HOM05D003802 ORTHO05D020190 2.4e-25 119.8 68 89.7
SEGI_03618 Sequoiadendron giganteum HOM05D003802 ORTHO05D004829 2.4e-25 119.8 106 55.7
MD12G1169900 Malus domestica HOM05D003802 ORTHO05D004829 2.0e-24 116.7 97 68.0
unitig_736.g22759 Utricularia gibba HOM05D003802 ORTHO05D004829 4.5e-24 115.5 82 72.0
A06p28940 Brassica napus HOM05D003802 ORTHO05D020190 2.5e-22 109.8 78 73.1
BraA06t25839Z Brassica rapa HOM05D003802 ORTHO05D020190 2.5e-22 109.8 78 73.1
BraA03t15488Z Brassica rapa HOM05D003802 ORTHO05D020190 7.9e-21 104.8 72 73.6
Ah.12g058740 Amaranthus hybridus HOM05D003802 ORTHO05D004829 1.8e-20 103.6 144 45.8
BraA03t15487Z Brassica rapa HOM05D003802 ORTHO05D043171 3.1e-17 92.8 56 78.6
FAN09G1187 Fragaria x ananassa HOM05D003802 ORTHO05D004829 3.5e-16 89.4 110 47.3
AagrBONN_evm.TU.Sc2ySwM_228.298 Anthoceros agrestis HOM05D003802 ORTHO05D004829 1.9e-14 83.6 74 55.4
MBI18_g32053_MAGBIO Magnolia biondii HOM05D003802 ORTHO05D004829 9.7e-11 71.2 68 58.8
Nn2g10872 Nelumbo nucifera HOM05D003802 ORTHO05D020190 9.7e-11 71.2 55 61.8
MD00G1080100 Malus domestica HOM05D003802 ORTHO05D004829 4.8e-10 68.9 65 56.9
BolC9t57380H Brassica oleracea HOM05D003802 ORTHO05D043171 1.2e-08 64.3 31 87.1
VMungo1383G0297 Vigna mungo HOM05D003802 ORTHO05D004829 1.2e-08 64.3 47 68.1


User provided reference genes

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