Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34201H Brassica oleracea HOM05D006953 ORTHO05D008556 2.0e-13 77.8 38 100.0
Thhalv10021851m.g Eutrema salsugineum HOM05D006953 ORTHO05D008556 2.9e-12 73.9 38 92.1
BraA03t12923Z Brassica rapa HOM05D006953 ORTHO05D008556 8.4e-12 72.4 38 89.5
AL3G24240 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 2.5e-11 70.9 38 86.8
AT3G12587 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 2.5e-11 70.9 38 86.8
BcaC01g04017 Brassica carinata HOM05D006953 ORTHO05D008556 2.5e-11 70.9 38 86.8
BolC3t16848H Brassica oleracea HOM05D006953 ORTHO05D008556 2.5e-11 70.9 38 86.8
Carub.0003s1193 Capsella rubella HOM05D006953 ORTHO05D008556 2.5e-11 70.9 38 86.8
Aa31LG3G80 Aethionema arabicum HOM05D006953 ORTHO05D008556 7.1e-11 69.3 38 84.2
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 7.1e-11 69.3 38 86.8
BNapus_Darmor_BZH_scaffold_149p00110 Brassica napus HOM05D006953 ORTHO05D008556 7.1e-11 69.3 38 86.8
C01p52590 Brassica napus HOM05D006953 ORTHO05D008556 7.1e-11 69.3 38 86.8
BolC1t05198H Brassica oleracea HOM05D006953 ORTHO05D008556 7.1e-11 69.3 38 86.8
BraA01t04125Z Brassica rapa HOM05D006953 ORTHO05D008556 7.1e-11 69.3 38 86.8
CARHR087090 Cardamine hirsuta HOM05D006953 ORTHO05D008556 2.7e-10 67.4 38 81.6
THA.LOC104799351 Tarenaya hassleriana HOM05D006953 ORTHO05D008556 3.5e-10 67.0 38 78.9
PSO339G5949 Papaver somniferum HOM05D006953 ORTHO05D008556 7.9e-10 65.9 38 78.9
TWI53G1308 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 7.9e-10 65.9 38 78.9
PSO801G0549 Papaver somniferum HOM05D006953 ORTHO05D008556 1.0e-09 65.5 38 78.9
vmacro20134 Vaccinium macrocarpon HOM05D006953 ORTHO05D008556 1.0e-09 65.5 38 76.3
Eucgr.K03148 Eucalyptus grandis HOM05D006953 ORTHO05D008556 1.3e-09 65.1 38 76.3
CiPaw.10G144400 Carya illinoinensis HOM05D006953 ORTHO05D008556 2.3e-09 64.3 38 78.9
Migut.A00495 Erythranthe guttata HOM05D006953 ORTHO05D008556 2.3e-09 64.3 38 76.3
Actinidia13138 Actinidia chinensis HOM05D006953 ORTHO05D008556 3.0e-09 63.9 38 76.3
CANSAT56G0829 Cannabis sativa HOM05D006953 ORTHO05D008556 3.0e-09 63.9 38 73.7
CANSAT56G2326 Cannabis sativa HOM05D006953 ORTHO05D008556 3.0e-09 63.9 38 73.7
Cc06_g02830 Coffea canephora HOM05D006953 ORTHO05D008556 3.0e-09 63.9 38 76.3
Duzib114G0949 Durio zibethinus HOM05D006953 ORTHO05D008556 3.0e-09 63.9 38 76.3
Duzib128G1377 Durio zibethinus HOM05D006953 ORTHO05D008556 3.0e-09 63.9 38 76.3
Manes.09G090100 Manihot esculenta HOM05D006953 ORTHO05D008556 3.0e-09 63.9 38 76.3
Thecc.05G042200 Theobroma cacao HOM05D006953 ORTHO05D008556 3.0e-09 63.9 38 78.9
TWI74G1054 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 3.0e-09 63.9 38 76.3
CAN.G97.41 Capsicum annuum HOM05D006953 ORTHO05D008556 3.9e-09 63.5 38 73.7
SGA_v2.0_scaffold27G11723 Striga asiatica HOM05D006953 ORTHO05D008556 3.9e-09 63.5 35 80.0
Duzib106G0684 Durio zibethinus HOM05D006953 ORTHO05D008556 6.7e-09 62.8 38 73.7
Gohir.A10G216201 Gossypium hirsutum HOM05D006953 ORTHO05D008556 6.7e-09 62.8 38 76.3
Gohir.A13G019700 Gossypium hirsutum HOM05D006953 ORTHO05D008556 6.7e-09 62.8 38 73.7
Gohir.D13G020300 Gossypium hirsutum HOM05D006953 ORTHO05D008556 6.7e-09 62.8 38 73.7
Medtr7g099720 Medicago truncatula HOM05D006953 ORTHO05D008556 6.7e-09 62.8 38 76.3
Prupe.6G252200 Prunus persica HOM05D006953 ORTHO05D008556 6.7e-09 62.8 38 73.7
Thecc.10G046100 Theobroma cacao HOM05D006953 ORTHO05D008556 6.7e-09 62.8 38 73.7
COL.COLO4_14982 Corchorus olitorius HOM05D006953 ORTHO05D008556 8.7e-09 62.4 38 73.7
Gohir.A09G157400 Gossypium hirsutum HOM05D006953 ORTHO05D008556 8.7e-09 62.4 38 73.7
Gohir.D09G152700 Gossypium hirsutum HOM05D006953 ORTHO05D008556 8.7e-09 62.4 38 73.7
Gohir.D10G225201 Gossypium hirsutum HOM05D006953 ORTHO05D008556 8.7e-09 62.4 38 73.7
Gorai.006G174200 Gossypium raimondii HOM05D006953 ORTHO05D008556 8.7e-09 62.4 38 73.7
Gorai.011G256200 Gossypium raimondii HOM05D006953 ORTHO05D008556 8.7e-09 62.4 38 73.7
Manes.08G128230 Manihot esculenta HOM05D006953 ORTHO05D008556 8.7e-09 62.4 38 73.7
Manes.10G032302 Manihot esculenta HOM05D006953 ORTHO05D008556 8.7e-09 62.4 38 73.7
Potri.008G053200 Populus trichocarpa HOM05D006953 ORTHO05D008556 8.7e-09 62.4 38 73.7
Potri.010G207100 Populus trichocarpa HOM05D006953 ORTHO05D008556 8.7e-09 62.4 38 73.7
PGR044G1841 Punica granatum HOM05D006953 ORTHO05D008556 8.7e-09 62.4 38 73.7
Hund17592 Selenicereus undatus HOM05D006953 ORTHO05D008556 8.7e-09 62.4 38 73.7
GSVIVG01034200001 Vitis vinifera HOM05D006953 ORTHO05D008556 8.7e-09 62.4 38 73.7
FAN09G0966 Fragaria x ananassa HOM05D006953 ORTHO05D008556 1.1e-08 62.0 35 77.1
FAN14G5692 Fragaria x ananassa HOM05D006953 ORTHO05D008556 1.1e-08 62.0 35 77.1
Nn1g01406 Nelumbo nucifera HOM05D006953 ORTHO05D008556 1.1e-08 62.0 38 73.7
Duzib106G1537 Durio zibethinus HOM05D006953 ORTHO05D008556 1.5e-08 61.6 38 71.1
PSO384G5050 Papaver somniferum HOM05D006953 ORTHO05D008556 1.5e-08 61.6 34 79.4
Potri.008G053300 Populus trichocarpa HOM05D006953 ORTHO05D008556 1.5e-08 61.6 38 73.7
Glyma.03G171300 Glycine max HOM05D006953 ORTHO05D008556 1.9e-08 61.2 38 73.7
Glyma.19G172400 Glycine max HOM05D006953 ORTHO05D008556 1.9e-08 61.2 38 73.7
Mapoly0086s0029 Marchantia polymorpha HOM05D006953 ORTHO05D008556 1.9e-08 61.2 35 71.4
Phvul.005G001900 Phaseolus vulgaris HOM05D006953 ORTHO05D008556 1.9e-08 61.2 38 73.7
MELO3C030371.2 Cucumis melo HOM05D006953 ORTHO05D008556 2.5e-08 60.8 38 71.1
Os07g0620500 Oryza sativa ssp. japonica HOM05D006953 ORTHO05D008556 2.5e-08 60.8 38 71.1
Nn6g34196 Nelumbo nucifera HOM05D006953 ORTHO05D008556 3.3e-08 60.5 38 71.1
THA.LOC104816283 Tarenaya hassleriana HOM05D006953 ORTHO05D008556 3.3e-08 60.5 38 71.1
Actinidia02894 Actinidia chinensis HOM05D005343 ORTHO05D008556 4.3e-08 60.1 38 71.1
CSS0025790 Camellia sinensis var. sinensis HOM05D006953 ORTHO05D008556 4.3e-08 60.1 38 73.7
Gohir.A01G223600 Gossypium hirsutum HOM05D006953 ORTHO05D008556 4.3e-08 60.1 35 74.3
Gohir.D01G212800 Gossypium hirsutum HOM05D006953 ORTHO05D008556 4.3e-08 60.1 35 74.3
Gorai.002G258800 Gossypium raimondii HOM05D006953 ORTHO05D008556 4.3e-08 60.1 35 74.3
COL.COLO4_14834 Corchorus olitorius HOM05D000248 ORTHO05D000146 5.7e-08 59.7 34 76.5
ECA232G3005 Erigeron canadensis HOM05D006953 ORTHO05D008556 5.7e-08 59.7 36 77.8
Nn3g21523 Nelumbo nucifera HOM05D006953 ORTHO05D008556 5.7e-08 59.7 35 65.7
CANSAT35G0750 Cannabis sativa HOM05D006953 ORTHO05D008556 7.4e-08 59.3 38 71.1
Glyma.13G258200 Glycine max HOM05D006953 ORTHO05D008556 7.4e-08 59.3 38 73.7
MD04G1125200 Malus domestica HOM05D006953 ORTHO05D008556 7.4e-08 59.3 38 68.4
BcaB01g06171 Brassica carinata HOM05D001365 ORTHO05D001291 9.6e-08 58.9 35 71.4
BcaB01g06189 Brassica carinata HOM05D001365 ORTHO05D001291 9.6e-08 58.9 35 71.4
A03p00780 Brassica napus HOM05D006953 ORTHO05D008556 9.6e-08 58.9 35 71.4
C03p01030 Brassica napus HOM05D006953 ORTHO05D008556 9.6e-08 58.9 35 71.4
C04p60710 Brassica napus HOM05D006953 ORTHO05D008556 9.6e-08 58.9 35 71.4
BolC3t12664H Brassica oleracea HOM05D006953 ORTHO05D008556 9.6e-08 58.9 35 71.4
BraA03t09462Z Brassica rapa HOM05D001365 ORTHO05D001291 9.6e-08 58.9 35 71.4
AL3G20640 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 1.3e-07 58.5 35 71.4
AT3G09455 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 1.3e-07 58.5 35 71.4
Carub.0003s0856 Capsella rubella HOM05D006953 ORTHO05D008556 1.3e-07 58.5 35 71.4
Thhalv10021844m.g Eutrema salsugineum HOM05D006953 ORTHO05D008556 1.3e-07 58.5 35 71.4
Ciclev10033290m.g Citrus clementina HOM05D006953 ORTHO05D008556 1.6e-07 58.2 38 68.4
PGR142G3972 Punica granatum HOM05D006953 ORTHO05D008556 1.6e-07 58.2 38 68.4
BolC4t27560H Brassica oleracea HOM05D006953 ORTHO05D008556 2.8e-07 57.4 35 68.6
BolC9t60140H Brassica oleracea HOM05D006953 ORTHO05D008556 2.8e-07 57.4 35 68.6
TWI15G0277 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 2.8e-07 57.4 38 65.8
AL6G11750 Arabidopsis lyrata HOM05D006953 ORTHO05D008556 3.7e-07 57.0 35 65.7
CARHR083870 Cardamine hirsuta HOM05D006953 ORTHO05D008556 3.7e-07 57.0 35 68.6
ECA236G4263 Erigeron canadensis HOM05D006953 ORTHO05D008556 3.7e-07 57.0 38 68.4
Pp3c21_16500 Physcomitrium patens HOM05D006953 ORTHO05D008556 3.7e-07 57.0 36 66.7
AT5G02502 Arabidopsis thaliana HOM05D006953 ORTHO05D008556 4.8e-07 56.6 35 65.7
Phvul.006G203200 Phaseolus vulgaris HOM05D006953 ORTHO05D008556 4.8e-07 56.6 38 71.1
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 6.2e-07 56.2 34 70.6
Os03g0392050 Oryza sativa ssp. japonica HOM05D006953 ORTHO05D008556 6.2e-07 56.2 38 65.8
EL10Ac8g18952 Beta vulgaris HOM05D006953 ORTHO05D008556 8.2e-07 55.8 33 72.7
RcHm_v2.0_Chr1g0366451 Rosa chinensis HOM05D006953 ORTHO05D008556 1.4e-06 55.1 35 71.4
SEGI_27928 Sequoiadendron giganteum HOM05D006953 ORTHO05D008556 3.1e-06 53.9 38 71.1
FAN10G2372 Fragaria x ananassa HOM05D006953 ORTHO05D008556 4.0e-06 53.5 38 65.8
FAN01G1395 Fragaria x ananassa HOM05D006953 ORTHO05D008556 5.3e-06 53.1 38 65.8
FAN01G2049 Fragaria x ananassa HOM05D006953 ORTHO05D008556 5.3e-06 53.1 38 65.8
FAN03G0258 Fragaria x ananassa HOM05D006953 ORTHO05D008556 5.3e-06 53.1 38 65.8
FAN06G2124 Fragaria x ananassa HOM05D006953 ORTHO05D008556 5.3e-06 53.1 38 65.8
FAN06G2412 Fragaria x ananassa HOM05D006953 ORTHO05D008556 5.3e-06 53.1 38 65.8
Glyma.15G057100 Glycine max HOM05D006953 ORTHO05D008556 5.3e-06 53.1 35 68.6
MD07G1195400 Malus domestica HOM05D006953 ORTHO05D008556 5.3e-06 53.1 38 65.8
TWI63G1588 Tripterygium wilfordii HOM05D006953 ORTHO05D008556 5.3e-06 53.1 38 60.5


User provided reference genes

Program Settings