Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34147H Brassica oleracea HOM05D001100 ORTHO05D105479 2.8e-61 238.4 121 100.0
A06p30600 Brassica napus HOM05D001100 ORTHO05D001503 5.6e-09 64.7 36 83.3
C03p62360 Brassica napus HOM05D001100 ORTHO05D001503 5.6e-09 64.7 36 83.3
Carub.0008s2476 Capsella rubella HOM05D001100 ORTHO05D001503 1.6e-08 63.2 36 80.6
unitig_899.g14679 Utricularia gibba HOM05D001100 ORTHO05D001503 4.7e-08 61.6 36 77.8
Duzib264G0434 Durio zibethinus HOM05D001100 ORTHO05D001503 1.1e-07 60.5 46 58.7
Gohir.A09G004400 Gossypium hirsutum HOM05D001100 ORTHO05D001503 1.1e-07 60.5 36 72.2
Gorai.006G005300 Gossypium raimondii HOM05D001100 ORTHO05D001503 1.1e-07 60.5 36 72.2
Lj4C836T4 Lonicera japonica HOM05D001100 ORTHO05D001503 1.1e-07 60.5 36 72.2
COL.COLO4_35760 Corchorus olitorius HOM05D001100 ORTHO05D001503 3.1e-07 58.9 36 69.4
Duzib187G0114 Durio zibethinus HOM05D001100 ORTHO05D001503 3.1e-07 58.9 36 69.4
Migut.H00694 Erythranthe guttata HOM05D001100 ORTHO05D001503 3.1e-07 58.9 38 68.4
Lsat_1_v5_gn_4_137741 Lactuca sativa HOM05D001100 ORTHO05D001503 3.1e-07 58.9 38 68.4
Manes.12G156600 Manihot esculenta HOM05D001100 ORTHO05D001503 3.1e-07 58.9 36 69.4
Potri.005G063900 Populus trichocarpa HOM05D001100 ORTHO05D001503 3.1e-07 58.9 36 69.4
SGA_v2.0_scaffold370G50110 Striga asiatica HOM05D001100 ORTHO05D001503 3.1e-07 58.9 36 69.4
TWI79G1082 Tripterygium wilfordii HOM05D001100 ORTHO05D001503 3.1e-07 58.9 36 69.4
MD01G1008900 Malus domestica HOM05D001100 ORTHO05D001503 5.2e-07 58.2 36 69.4
Gohir.A04G103566 Gossypium hirsutum HOM05D001100 ORTHO05D001503 6.8e-07 57.8 36 66.7
HanXRQChr09g0259741 Helianthus annuus HOM05D001100 ORTHO05D001503 6.8e-07 57.8 38 65.8
Phvul.002G190600 Phaseolus vulgaris HOM05D001100 ORTHO05D001503 6.8e-07 57.8 36 69.4
Sabra05G0053200 Salix brachista HOM05D001100 ORTHO05D001503 6.8e-07 57.8 36 69.4
SalBow1G4172 Salvia bowleyana HOM05D001100 ORTHO05D001503 6.8e-07 57.8 38 65.8
ATR0584G033 Amborella trichopoda HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 66.7
A09p08500 Brassica napus HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 77.8
C09p09630 Brassica napus HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 77.8
BolC9t53874H Brassica oleracea HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 77.8
BraA09t36499Z Brassica rapa HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 77.8
CSS0011776 Camellia sinensis var. sinensis HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 66.7
CSS0018704 Camellia sinensis var. sinensis HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 66.7
CANSAT01G0170 Cannabis sativa HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 72.2
Cfa002905 Carpinus fangiana HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 66.7
Haze_25258 Corylus avellana HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 66.7
Dinv24378 Davidia involucrata HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 66.7
Gohir.A05G256500 Gossypium hirsutum HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 66.7
Gohir.A09G019900 Gossypium hirsutum HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 66.7
Gohir.D09G019500 Gossypium hirsutum HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 66.7
Gorai.006G022900 Gossypium raimondii HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 66.7
Hma1.2p1_0539F.1_g174620 Hydrangea macrophylla HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 66.7
QL10p043423 Quercus lobata HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 66.7
Rhsim08G0002400 Rhododendron simsii HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 69.4
RcHm_v2.0_Chr2g0121731 Rosa chinensis HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 66.7
TAR381G0336 Trochodendron aralioides HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 69.4
vmacro18671 Vaccinium macrocarpon HOM05D001100 ORTHO05D001503 8.9e-07 57.4 36 69.4
Atru.chr4.879 Acer truncatum HOM05D001100 ORTHO05D001503 1.2e-06 57.0 38 65.8
Aqoxy1G01118 Aquilegia oxysepala HOM05D001100 ORTHO05D001503 1.2e-06 57.0 36 66.7
MBI06_g27446_MAGBIO Magnolia biondii HOM05D001100 ORTHO05D001503 1.2e-06 57.0 38 65.8
Nn5g28512 Nelumbo nucifera HOM05D001100 ORTHO05D001503 1.2e-06 57.0 36 63.9
Oeu004238.1 Olea europaea HOM05D001100 ORTHO05D001503 1.2e-06 57.0 38 65.8
DCAR_001208 Daucus carota HOM05D001100 ORTHO05D001503 1.5e-06 56.6 52 53.8
Prupe.4G272000 Prunus persica HOM05D001100 ORTHO05D001503 1.5e-06 56.6 36 66.7
Oeu058291.1 Olea europaea HOM05D001100 ORTHO05D001503 2.0e-06 56.2 38 60.5
PGR119G0884 Punica granatum HOM05D001100 ORTHO05D001503 2.0e-06 56.2 36 63.9
Thecc.01G134000 Theobroma cacao HOM05D001100 ORTHO05D001503 2.0e-06 56.2 36 66.7
CiPaw.03G120600 Carya illinoinensis HOM05D001100 ORTHO05D001503 2.6e-06 55.8 36 63.9
Potri.007G105100 Populus trichocarpa HOM05D001100 ORTHO05D001503 2.6e-06 55.8 36 63.9
FAN23G1742 Fragaria x ananassa HOM05D001100 ORTHO05D001503 3.4e-06 55.5 36 63.9
Cpa.g.sc42.165 Carica papaya HOM05D001100 ORTHO05D001503 4.4e-06 55.1 36 63.9
FvH4_1g24470 Fragaria vesca HOM05D001100 ORTHO05D001503 4.4e-06 55.1 36 66.7
Peaxi162Scf00525g00018 Petunia axillaris HOM05D001100 ORTHO05D001503 4.4e-06 55.1 46 56.5
Actinidia01386 Actinidia chinensis HOM05D001100 ORTHO05D001503 5.8e-06 54.7 36 63.9
BcaC01g02653 Brassica carinata HOM05D001100 ORTHO05D001503 5.8e-06 54.7 40 62.5
C03p62340 Brassica napus HOM05D001100 ORTHO05D001503 5.8e-06 54.7 40 62.5
BolC3t18496H Brassica oleracea HOM05D001100 ORTHO05D001503 5.8e-06 54.7 40 62.5
Ca_18248_v3 Cicer arietinum L. HOM05D001100 ORTHO05D001503 7.6e-06 54.3 36 63.9
Os12g0183300 Oryza sativa ssp. japonica HOM05D001100 ORTHO05D001503 7.6e-06 54.3 36 63.9
Rhsim07G0132700 Rhododendron simsii HOM05D023492 ORTHO05D023105 7.6e-06 54.3 38 63.2
TPR.G2929 Trifolium pratense HOM05D001100 ORTHO05D001503 7.6e-06 54.3 36 63.9
MSTRG.2644 Avicennia marina HOM05D001100 ORTHO05D001503 9.9e-06 53.9 38 60.5
Zm00001eb409080 Zea mays HOM05D001100 ORTHO05D001503 9.9e-06 53.9 36 63.9


User provided reference genes

Program Settings