Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33727H Brassica oleracea HOM05D007625 ORTHO05D009738 8.2e-157 557.0 275 100.0
BraA05t22123Z Brassica rapa HOM05D007625 ORTHO05D009738 2.7e-144 515.4 275 92.0
C05p49750 Brassica napus HOM05D007625 ORTHO05D009738 1.4e-140 503.1 275 93.1
BcaB06g25757 Brassica carinata HOM05D007625 ORTHO05D009738 7.7e-131 470.7 271 86.3
Sp3g14890 Schrenkiella parvula HOM05D007625 ORTHO05D009738 4.1e-124 448.4 278 81.3
BcaNung06438 Brassica carinata HOM05D007625 ORTHO05D009738 5.3e-124 448.0 247 90.7
Thhalv10021369m.g Eutrema salsugineum HOM05D007625 ORTHO05D009738 3.5e-123 445.3 274 80.7
AT3G16565 Arabidopsis thaliana HOM05D007625 ORTHO05D009738 2.1e-120 436.0 287 75.6
AL3G29430 Arabidopsis lyrata HOM05D007625 ORTHO05D009738 4.0e-119 431.8 274 75.9
CARHR091770 Cardamine hirsuta HOM05D007625 ORTHO05D009738 1.2e-118 430.3 274 77.7
Ciclev10005679m.g Citrus clementina HOM05D007625 ORTHO05D009738 5.2e-103 378.3 273 67.4
Thecc.04G284200 Theobroma cacao HOM05D007625 ORTHO05D009738 1.7e-101 373.2 278 65.1
Atru.chr4.2832 Acer truncatum HOM05D007625 ORTHO05D009738 4.9e-101 371.7 273 66.3
Duzib212G0442 Durio zibethinus HOM05D007625 ORTHO05D009738 8.3e-101 370.9 278 65.5
GSVIVG01017755001 Vitis vinifera HOM05D007625 ORTHO05D009738 1.7e-98 363.2 264 68.6
Actinidia00027 Actinidia chinensis HOM05D007625 ORTHO05D009738 8.6e-98 360.9 274 65.3
TWI09G0101 Tripterygium wilfordii HOM05D007625 ORTHO05D009738 1.5e-97 360.1 275 64.0
CSS0007271 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 4.3e-97 358.6 274 65.0
Gohir.A09G239300 Gossypium hirsutum HOM05D007625 ORTHO05D009738 1.2e-96 357.1 273 63.4
Ca_21505_v3 Cicer arietinum L. HOM05D007625 ORTHO05D009738 2.8e-96 355.9 273 63.0
Manes.03G194700 Manihot esculenta HOM05D007625 ORTHO05D009738 1.4e-95 353.6 278 65.5
Lj4g0027770 Lotus japonicus HOM05D007625 ORTHO05D009738 1.8e-95 353.2 273 63.4
Lsat_1_v5_gn_5_53001 Lactuca sativa HOM05D007625 ORTHO05D009738 2.3e-95 352.8 266 65.8
PGR031G0588 Punica granatum HOM05D007625 ORTHO05D009738 5.2e-95 351.7 275 62.9
Gohir.D09G240200 Gossypium hirsutum HOM05D007625 ORTHO05D009738 1.2e-94 350.5 280 62.1
Medtr4g119840 Medicago truncatula HOM05D007625 ORTHO05D009738 2.0e-94 349.7 273 62.6
Psat4g025880 Pisum sativum HOM05D007625 ORTHO05D009738 2.6e-94 349.4 273 62.3
CANSAT78G1499 Cannabis sativa HOM05D007625 ORTHO05D009738 3.4e-94 349.0 274 62.8
Prupe.1G137400 Prunus persica HOM05D007625 ORTHO05D009738 5.8e-94 348.2 273 63.0
arahy.Tifrunner.gnm1.ann1.96EVWK Arachis hypogaea HOM05D007625 ORTHO05D009738 7.5e-94 347.8 280 60.7
arahy.Tifrunner.gnm1.ann1.QKB3E6 Arachis hypogaea HOM05D007625 ORTHO05D009738 7.5e-94 347.8 280 60.7
Sabra10G0014200 Salix brachista HOM05D007625 ORTHO05D009738 1.3e-93 347.1 275 64.7
CSS0032939 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 1.7e-93 346.7 274 62.8
QL06p008815 Quercus lobata HOM05D007625 ORTHO05D009738 1.7e-93 346.7 272 63.6
HanXRQChr03g0080751 Helianthus annuus HOM05D007625 ORTHO05D009738 8.3e-93 344.4 272 62.5
Rhsim02G0009500 Rhododendron simsii HOM05D007625 ORTHO05D009738 1.1e-92 344.0 273 62.3
ECA240G3588 Erigeron canadensis HOM05D007625 ORTHO05D009738 1.4e-92 343.6 268 64.6
TAR633G2367 Trochodendron aralioides HOM05D007625 ORTHO05D009738 1.4e-92 343.6 272 63.6
SGA_v2.0_scaffold428G51521 Striga asiatica HOM05D007625 ORTHO05D009738 2.4e-92 342.8 267 62.5
PSO017G7039 Papaver somniferum HOM05D007625 ORTHO05D009738 7.0e-92 341.3 275 62.5
RcHm_v2.0_Chr4g0422131 Rosa chinensis HOM05D007625 ORTHO05D009738 9.2e-92 340.9 275 60.0
FAN07G2640 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.2e-91 340.5 269 60.6
Lalb_Chr13g0303611 Lupinus albus HOM05D007625 ORTHO05D009738 1.2e-91 340.5 278 59.4
TPR.G3171 Trifolium pratense HOM05D007625 ORTHO05D009738 1.2e-91 340.5 276 61.6
MBI18_g04687_MAGBIO Magnolia biondii HOM05D007625 ORTHO05D009738 2.7e-91 339.3 270 62.2
VMungo1215G1867 Vigna mungo HOM05D007625 ORTHO05D009738 4.6e-91 338.6 273 60.1
FvH4_4g17960 Fragaria vesca HOM05D007625 ORTHO05D009738 6.0e-91 338.2 269 60.2
Phvul.003G105100 Phaseolus vulgaris HOM05D007625 ORTHO05D009738 1.3e-90 337.0 274 59.1
Aqoxy2G02997 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 1.7e-90 336.7 270 62.2
Migut.N00092 Erythranthe guttata HOM05D007625 ORTHO05D009738 1.7e-90 336.7 267 62.2
Hund20557 Selenicereus undatus HOM05D007625 ORTHO05D009738 3.9e-90 335.5 271 63.5
Cc03_g01990 Coffea canephora HOM05D007625 ORTHO05D009738 1.1e-89 334.0 262 63.7
DCAR_027078 Daucus carota HOM05D007625 ORTHO05D009738 7.3e-89 331.3 274 60.2
Gorai.006G263200 Gossypium raimondii HOM05D007625 ORTHO05D009738 6.2e-88 328.2 259 61.8
Glyma.07G247900 Glycine max HOM05D007625 ORTHO05D009738 8.1e-88 327.8 274 58.4
Potri.010G024900 Populus trichocarpa HOM05D007625 ORTHO05D009738 1.8e-87 326.6 262 63.7
MD13G1169000 Malus domestica HOM05D007625 ORTHO05D009738 2.3e-87 326.2 269 60.6
FAN12G1696 Fragaria x ananassa HOM05D007625 ORTHO05D009738 3.7e-85 318.9 265 58.5
FAN12G4294 Fragaria x ananassa HOM05D007625 ORTHO05D009738 3.7e-85 318.9 261 59.0
Rhsim02G0010500 Rhododendron simsii HOM05D007625 ORTHO05D009738 6.4e-85 318.2 260 61.2
FAN17G2144 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.1e-84 317.4 295 54.9
ATR0796G164 Amborella trichopoda HOM05D007625 ORTHO05D009738 4.1e-84 315.5 274 58.8
Dinv44384 Davidia involucrata HOM05D007625 ORTHO05D005073 1.2e-83 313.9 272 59.6
Aa31LG8G3700 Aethionema arabicum HOM05D007625 ORTHO05D009738 6.6e-82 308.1 289 59.2
Eucgr.B01310 Eucalyptus grandis HOM05D007625 ORTHO05D009738 2.5e-81 306.2 259 60.2
Os01g0120400 Oryza sativa ssp. japonica HOM05D007625 ORTHO05D009738 1.6e-80 303.5 271 55.7
Hma1.2p1_1567F.1_g291060 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 8.9e-79 297.7 232 65.5
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 5.8e-78 295.0 239 60.3
vmacro15237 Vaccinium macrocarpon HOM05D007625 ORTHO05D009738 8.4e-77 291.2 267 57.3
Hma1.2p1_0078F.1_g040640 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 1.4e-76 290.4 228 64.5
Pp3c1_7890 Physcomitrium patens HOM05D007625 ORTHO05D009738 2.1e-72 276.6 271 52.0
Carub.0003s1629 Capsella rubella HOM05D007625 ORTHO05D009738 4.7e-72 275.4 183 74.9
Nn3g21433 Nelumbo nucifera HOM05D007625 ORTHO05D009738 8.1e-72 274.6 269 53.9
Lj3A816T27 Lonicera japonica HOM05D007625 ORTHO05D009738 1.1e-71 274.2 224 64.7
Cpa.g.sc16.167 Carica papaya HOM05D007625 ORTHO05D009738 7.1e-68 261.5 221 59.7
Lj3A819G38 Lonicera japonica HOM05D007625 ORTHO05D009738 1.5e-65 253.8 281 52.7
CDE12G0709 Ceratophyllum demersum HOM05D007625 ORTHO05D009738 1.3e-64 250.8 275 49.1
SMO356G0461 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 1.3e-64 250.8 267 47.2
SMO002G0002 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 1.2e-62 244.2 258 47.3
AUR62035873 Chenopodium quinoa HOM05D007625 ORTHO05D009738 3.8e-61 239.2 214 57.5
AagrBONN_evm.TU.Sc2ySwM_228.2358 Anthoceros agrestis HOM05D007625 ORTHO05D009738 6.2e-56 221.9 213 54.0
Glyma.17G026200 Glycine max HOM05D007625 ORTHO05D009738 3.2e-52 209.5 376 36.4
BcaB03g15776 Brassica carinata HOM05D007625 ORTHO05D009738 1.2e-51 207.6 112 90.2
Sc19g0005180 Simmondsia chinensis HOM05D007625 ORTHO05D009738 1.8e-50 203.8 274 44.2
Zm00001eb334800 Zea mays HOM05D007625 ORTHO05D009738 9.6e-49 198.0 215 50.7
MCO16G322 Micromonas commoda HOM05D007625 ORTHO05D009738 2.2e-45 186.8 278 39.9
EL10Ac3g06592 Beta vulgaris HOM05D007625 ORTHO05D009738 2.5e-44 183.3 277 40.1
Hma1.2p1_0785F.1_g217410 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 1.7e-24 117.5 86 62.8
unitig_0.g621 Utricularia gibba HOM05D007625 ORTHO05D009738 1.4e-23 114.4 165 42.4
Medtr4g123440 Medicago truncatula HOM05D007625 ORTHO05D009738 5.1e-18 95.9 111 49.5
Cpa.g.c47082 Carica papaya HOM05D007625 ORTHO05D009738 8.8e-18 95.1 78 59.0
Aqoxy2G02999 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 5.7e-17 92.4 59 74.6
Glyma.19G060100 Glycine max HOM05D007625 ORTHO05D009738 1.0e-13 81.6 86 50.0
MD16G1169600 Malus domestica HOM05D007625 ORTHO05D009738 1.0e-10 71.6 66 53.0
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 1.5e-09 67.8 250 25.6
SMO234G0071 Selaginella moellendorffii HOM05D001816 ORTHO05D002001 4.4e-09 66.2 231 29.4
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 9.7e-09 65.1 250 24.8
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 3.7e-08 63.2 255 23.5
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 4.8e-08 62.8 257 24.1
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 4.8e-08 62.8 259 26.3
Migut.F00930 Erythranthe guttata HOM05D001816 ORTHO05D002001 6.3e-08 62.4 251 26.3
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 8.2e-08 62.0 258 25.6
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 8.2e-08 62.0 253 24.5
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 8.2e-08 62.0 254 26.4
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 1.1e-07 61.6 250 23.6
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 1.1e-07 61.6 255 25.1
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 1.4e-07 61.2 250 24.4
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 1.4e-07 61.2 255 23.9
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 1.4e-07 61.2 233 24.9
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 1.8e-07 60.8 275 24.4
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 1.8e-07 60.8 255 25.1
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 2.4e-07 60.5 234 26.5
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 2.4e-07 60.5 250 25.2
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 3.1e-07 60.1 275 24.4
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 3.1e-07 60.1 250 24.4
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 5.3e-07 59.3 253 24.5
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 5.3e-07 59.3 253 24.5
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 5.3e-07 59.3 231 23.8
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 5.3e-07 59.3 275 23.6
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 7.0e-07 58.9 236 24.6
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 7.0e-07 58.9 250 24.4
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 7.0e-07 58.9 251 25.1
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 7.0e-07 58.9 252 24.2
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 9.1e-07 58.5 250 24.8
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 9.1e-07 58.5 250 24.0
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 9.1e-07 58.5 250 24.4
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 1.2e-06 58.2 246 26.0
unitig_62.g23836 Utricularia gibba HOM05D001816 ORTHO05D002001 1.2e-06 58.2 230 24.3
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 1.6e-06 57.8 275 23.6
BolC3t21267H Brassica oleracea HOM05D001816 ORTHO05D002001 1.6e-06 57.8 258 24.8
MCO11G803 Micromonas commoda HOM05D001816 ORTHO05D002001 1.6e-06 57.8 225 26.2
ATR0019G036 Amborella trichopoda HOM05D001816 ORTHO05D002001 2.0e-06 57.4 283 24.7
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 2.7e-06 57.0 276 23.6
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 2.7e-06 57.0 276 23.6
Nn2g12439 Nelumbo nucifera HOM05D001816 ORTHO05D002001 2.7e-06 57.0 263 24.3
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 2.7e-06 57.0 263 24.7
Pp3c27_7320 Physcomitrium patens HOM05D001816 ORTHO05D002001 2.7e-06 57.0 254 25.2
Dinv29120 Davidia involucrata HOM05D001816 ORTHO05D002001 3.5e-06 56.6 250 23.2
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 3.5e-06 56.6 256 24.2
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 4.5e-06 56.2 248 23.8
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 5.9e-06 55.8 101 38.6
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 5.9e-06 55.8 275 23.6
Peaxi162Scf00516g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 5.9e-06 55.8 283 23.7
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 5.9e-06 55.8 255 23.9
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 7.7e-06 55.5 231 25.1


User provided reference genes

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