Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 0.0e+00 1230.3 654 100.0
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 0.0e+00 1220.3 654 99.2
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 0.0e+00 1218.8 654 99.2
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 0.0e+00 1170.2 655 95.9
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 0.0e+00 1157.5 655 95.3
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 0.0e+00 1128.2 656 92.5
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 8.1e-296 1020.0 663 83.6
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 5.8e-286 987.3 657 81.4
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 3.3e-265 918.3 657 76.3
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 4.5e-262 907.9 657 76.3
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 1.6e-256 889.4 648 75.8
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 2.9e-245 852.0 680 71.5
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 1.2e-235 820.1 660 69.8
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 1.2e-233 813.5 666 70.1
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 3.4e-209 732.3 650 62.5
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.2e-208 729.6 651 61.9
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.8e-207 726.5 657 61.5
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 5.4e-207 724.9 644 61.3
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.2e-206 723.8 672 60.6
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 1.2e-206 723.8 675 60.1
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 2.0e-206 723.0 656 61.7
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 4.6e-206 721.8 675 60.1
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 7.8e-206 721.1 648 62.3
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 7.8e-206 721.1 648 61.4
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 1.0e-205 720.7 661 62.3
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 3.9e-205 718.8 658 60.8
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 3.3e-204 715.7 627 60.4
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 9.5e-204 714.1 651 60.5
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 1.2e-203 713.8 601 63.1
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 8.0e-203 711.1 652 60.0
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 6.8e-202 708.0 638 59.1
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 2.2e-200 703.0 651 60.1
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 4.9e-200 701.8 656 60.8
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 1.9e-199 699.9 638 60.3
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 2.4e-199 699.5 662 59.4
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 7.0e-199 698.0 628 60.4
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 2.7e-198 696.0 652 60.1
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 6.0e-198 694.9 601 62.6
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 1.3e-197 693.7 576 63.0
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 3.9e-197 692.2 684 56.9
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 6.6e-197 691.4 658 59.7
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 1.1e-196 690.6 667 59.1
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 2.5e-196 689.5 663 58.5
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 4.3e-196 688.7 634 57.9
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 1.2e-195 687.2 654 57.8
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.6e-195 686.8 658 60.0
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 1.6e-195 686.8 660 59.4
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 2.1e-195 686.4 661 58.2
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 4.7e-195 685.3 643 56.6
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 4.7e-195 685.3 637 57.9
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 8.1e-195 684.5 623 60.4
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.8e-194 683.3 620 60.6
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 2.3e-194 682.9 642 57.9
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.5e-193 680.2 620 60.5
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 1.5e-193 680.2 663 58.2
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 2.6e-193 679.5 678 57.2
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 2.6e-193 679.5 647 57.2
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 9.9e-193 677.6 660 59.4
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 1.7e-192 676.8 657 58.3
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 4.9e-192 675.2 657 57.5
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 4.9e-192 675.2 649 58.9
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.9e-191 673.3 666 57.2
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 1.6e-190 670.2 643 57.1
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 2.7e-190 669.5 651 58.1
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 2.7e-190 669.5 672 57.0
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 1.3e-189 667.2 584 59.6
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 1.9e-188 663.3 660 56.4
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 7.3e-188 661.4 639 58.4
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 9.5e-188 661.0 646 57.9
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 9.5e-188 661.0 646 58.0
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 4.7e-187 658.7 614 59.4
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 1.1e-186 657.5 591 58.0
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 1.1e-186 657.5 655 58.0
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 1.1e-186 657.5 658 57.1
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 4.0e-186 655.6 652 56.0
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 4.0e-186 655.6 646 57.7
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 3.4e-185 652.5 654 57.8
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 3.4e-185 652.5 654 57.8
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 9.2e-183 644.4 672 56.5
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 4.6e-182 642.1 647 56.1
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 9.6e-180 634.4 647 54.4
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 1.4e-178 630.6 641 56.3
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 6.9e-178 628.2 647 56.0
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 1.3e-176 624.0 654 54.7
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 3.2e-175 619.4 652 54.4
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 7.1e-175 618.2 655 54.0
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 7.3e-172 608.2 593 58.7
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.1e-171 606.7 670 53.3
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 8.1e-171 604.7 648 55.4
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 2.4e-170 603.2 548 58.9
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 3.8e-168 595.9 599 57.9
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 4.2e-167 592.4 516 60.7
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 2.6e-161 573.2 648 52.6
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 4.9e-160 568.9 593 57.7
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 4.9e-160 568.9 629 51.5
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 3.1e-154 549.7 656 48.3
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 5.3e-154 548.9 662 51.8
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 2.9e-152 543.1 650 50.5
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 4.6e-150 535.8 658 51.4
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 6.0e-150 535.4 683 46.1
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 3.4e-137 493.0 440 63.2
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.3e-131 474.6 537 51.0
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 1.8e-130 470.7 579 44.9
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 5.0e-128 462.6 601 44.9
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 1.3e-120 438.0 679 40.2
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 1.8e-114 417.5 330 65.8
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 6.1e-110 402.5 669 40.2
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 2.0e-108 397.5 258 86.0
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 1.0e-101 375.2 252 84.5
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 5.2e-101 372.9 657 39.1
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 2.6e-92 344.0 647 34.6
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 9.8e-92 342.0 425 48.7
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 7.8e-89 332.4 552 40.9
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 5.0e-88 329.7 344 51.7
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 1.5e-87 328.2 252 75.8
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 2.8e-86 323.9 252 75.4
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.3e-85 320.9 428 45.3
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.2e-83 314.3 253 62.1
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.5e-79 300.8 292 55.8
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.4e-74 284.3 320 49.1
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 9.5e-71 272.3 239 68.2
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 6.4e-67 259.6 376 41.8
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.4e-66 258.5 214 70.1
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 3.3e-63 247.3 633 29.2
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 6.7e-48 196.4 163 71.2
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 2.6e-44 184.5 617 27.1
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 1.7e-43 181.8 650 27.4
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.3e-40 171.4 151 57.0
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 1.4e-37 162.2 177 50.8
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 5.3e-29 133.7 252 40.5
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 1.2e-28 132.5 252 40.1
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 4.5e-28 130.6 100 63.0
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 1.0e-27 129.4 102 60.8
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 4.6e-25 120.6 124 50.0
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 3.9e-24 117.5 112 63.4
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 5.1e-24 117.1 189 43.9
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 3.3e-23 114.4 106 52.8
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 2.4e-21 108.2 150 41.3
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 4.1e-21 107.5 157 49.0
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 2.5e-18 98.2 305 27.2
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.3e-14 85.9 123 45.5
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 1.7e-14 85.5 55 80.0
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 3.1e-13 81.3 45 82.2
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 9.1e-13 79.7 141 34.0
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 9.1e-13 79.7 141 34.0
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 9.1e-13 79.7 141 34.0
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 2.0e-12 78.6 141 33.3
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 2.0e-12 78.6 141 33.3
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 2.6e-12 78.2 141 33.3
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 4.5e-12 77.4 120 40.8
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 7.7e-12 76.6 142 40.1
Os12g0574400 Oryza sativa ssp. japonica HOM05D000810 ORTHO05D014916 5.2e-08 63.9 122 32.0
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 1.3e-06 59.3 44 56.8
BcaC05g28849 Brassica carinata HOM05D004772 ORTHO05D091725 4.8e-06 57.4 37 73.0


User provided reference genes

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