Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 7.3e-194 681.4 697 100.0
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 1.9e-189 666.8 567 100.0
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 1.9e-178 630.2 696 94.7
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 1.2e-175 620.9 696 96.0
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 1.2e-172 610.9 565 95.9
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 1.1e-162 577.8 569 91.6
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 1.4e-133 481.1 382 81.4
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 9.7e-130 468.4 386 78.8
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 1.3e-126 458.0 489 64.0
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 1.7e-121 441.0 362 79.6
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 3.9e-115 419.9 384 73.2
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 2.6e-111 407.1 354 77.7
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 7.2e-109 399.1 355 76.6
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 5.5e-93 346.3 322 74.8
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 1.4e-83 315.1 365 58.1
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 1.3e-78 298.5 336 61.3
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 3.0e-78 297.4 351 60.7
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 3.9e-78 297.0 337 59.3
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 1.5e-77 295.0 365 56.7
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 5.6e-77 293.1 333 60.4
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 7.3e-77 292.7 325 60.9
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 7.3e-77 292.7 363 55.9
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 9.5e-77 292.4 328 59.5
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 9.5e-77 292.4 328 59.5
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 1.6e-76 291.6 320 61.2
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 3.6e-76 290.4 311 63.0
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 1.4e-72 278.5 346 47.4
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 2.4e-72 277.7 371 53.4
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 8.6e-70 269.2 328 56.7
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 1.4e-67 261.9 314 63.4
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 4.9e-65 253.4 328 55.8
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 7.8e-63 246.1 304 59.5
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 1.7e-62 245.0 266 65.0
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 9.5e-61 239.2 278 56.5
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 4.7e-60 236.9 271 67.5
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 1.1e-59 235.7 268 63.8
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 4.0e-59 233.8 277 55.6
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 3.4e-58 230.7 321 58.9
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 9.9e-58 229.2 236 69.1
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 9.9e-58 229.2 261 60.9
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 2.2e-57 228.0 298 57.7
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 2.9e-57 227.6 276 62.7
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 3.8e-57 227.3 273 60.8
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 3.8e-57 227.3 263 56.3
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 6.4e-57 226.5 249 66.7
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 8.4e-57 226.1 260 63.1
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.4e-56 225.3 267 61.4
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 1.9e-56 224.9 298 55.4
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 1.9e-56 224.9 291 57.0
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.4e-56 224.6 267 61.4
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.4e-56 224.6 267 61.4
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 2.7e-55 221.1 272 60.3
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 4.6e-55 220.3 267 61.8
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 6.0e-55 219.9 272 60.3
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 3.9e-54 217.2 260 58.8
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 5.1e-54 216.9 283 57.2
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 5.1e-54 216.9 306 56.9
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 6.6e-54 216.5 281 57.7
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 1.5e-53 215.3 272 59.2
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 2.5e-53 214.5 274 59.1
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 7.3e-53 213.0 277 59.6
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 9.6e-53 212.6 275 58.9
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 3.6e-52 210.7 298 57.7
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 6.2e-52 209.9 303 55.1
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 1.1e-51 209.1 321 54.8
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 1.4e-51 208.8 250 67.6
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 2.6e-50 204.5 287 56.1
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 4.4e-50 203.8 258 60.5
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 5.8e-50 203.4 261 60.9
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 7.6e-50 203.0 307 54.4
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 2.2e-49 201.4 303 54.5
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 6.4e-49 199.9 260 60.8
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 1.1e-48 199.1 261 57.1
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 5.4e-48 196.8 278 55.4
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 1.6e-47 195.3 273 59.3
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 2.3e-46 191.4 258 59.3
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 7.3e-45 186.4 288 52.1
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 9.6e-45 186.0 254 58.7
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 1.5e-42 178.7 281 52.3
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 3.2e-40 171.0 217 67.3
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 4.2e-40 170.6 294 37.8
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 6.0e-39 166.8 282 52.5
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 7.9e-39 166.4 218 67.4
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 6.7e-38 163.3 316 46.8
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 2.5e-37 161.4 173 48.0
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 4.8e-36 157.1 227 59.0
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 1.1e-35 156.0 338 43.8
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 1.1e-35 156.0 231 60.6
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 1.8e-35 155.2 222 62.6
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 2.4e-35 154.8 224 59.8
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 3.1e-35 154.5 222 61.3
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 1.5e-34 152.1 282 50.0
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 1.5e-34 152.1 220 61.4
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 3.4e-34 151.0 282 50.4
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 7.6e-34 149.8 168 46.4
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 7.6e-34 149.8 312 46.8
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 1.4e-32 145.6 220 57.3
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.9e-32 145.2 116 61.2
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 1.9e-32 145.2 310 35.5
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 3.2e-32 144.4 303 33.0
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 9.6e-29 132.9 220 53.6
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 1.6e-20 105.5 90 54.4
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 4.1e-19 100.9 84 54.8
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 2.6e-18 98.2 99 48.5
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 3.3e-13 81.3 117 41.0
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 7.4e-13 80.1 56 67.9
BcaB04g17239 Brassica carinata HOM05D006707 ORTHO05D008243 3.1e-11 74.7 59 67.8
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 5.3e-11 73.9 163 27.6
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 2.6e-10 71.6 56 62.5
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 2.6e-10 71.6 56 62.5
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 4.5e-10 70.9 101 43.6
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 1.3e-09 69.3 46 69.6
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.9e-09 68.2 55 56.4
Ca_08161_v3 Cicer arietinum L. HOM05D002007 ORTHO05D000355 2.3e-06 58.5 101 29.7
Ca_17107_v3 Cicer arietinum L. HOM05D002007 ORTHO05D000355 2.3e-06 58.5 101 29.7
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 3.0e-06 58.2 109 31.2
Atru.chr9.109 Acer truncatum HOM05D004783 ORTHO05D005581 6.7e-06 57.0 103 31.1


User provided reference genes

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