Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33549H Brassica oleracea HOM05D005181 ORTHO05D006086 4.6e-225 784.3 399 100.0
BolC5t33518H Brassica oleracea HOM05D005181 ORTHO05D006086 6.4e-187 657.5 414 85.7
C05p48090 Brassica napus HOM05D005181 ORTHO05D006086 3.0e-176 622.1 467 74.7
A05p31690 Brassica napus HOM05D005181 ORTHO05D006086 7.4e-167 590.9 417 78.4
BraA05t22002Z Brassica rapa HOM05D005181 ORTHO05D006086 4.1e-165 585.1 417 77.7
Sp3g16220 Schrenkiella parvula HOM05D005181 ORTHO05D006086 2.7e-145 519.2 428 68.0
Thhalv10020020m.g Eutrema salsugineum HOM05D005181 ORTHO05D006086 1.4e-136 490.3 430 64.2
Aa31LG8G4950 Aethionema arabicum HOM05D005181 ORTHO05D006086 2.4e-125 453.0 444 57.4
AL3G31260 Arabidopsis lyrata HOM05D005181 ORTHO05D006086 7.5e-119 431.4 425 59.1
AL7G34390 Arabidopsis lyrata HOM05D005181 ORTHO05D006086 4.1e-117 425.6 416 58.2
AT3G18100 Arabidopsis thaliana HOM05D005181 ORTHO05D006086 5.8e-111 405.2 327 67.6
C01p13650 Brassica napus HOM05D005181 ORTHO05D006086 5.6e-98 362.1 414 53.4
AL7G46060 Arabidopsis lyrata HOM05D005181 ORTHO05D006086 2.8e-97 359.8 388 54.4
BcaNung01760 Brassica carinata HOM05D005181 ORTHO05D006086 1.4e-96 357.5 396 53.3
BcaC09g51390 Brassica carinata HOM05D005181 ORTHO05D006086 1.8e-96 357.1 431 51.3
BolC1t01339H Brassica oleracea HOM05D005181 ORTHO05D006086 1.8e-96 357.1 414 52.7
BraA01t01105Z Brassica rapa HOM05D005181 ORTHO05D006086 4.4e-95 352.4 415 51.8
A01p11570 Brassica napus HOM05D005181 ORTHO05D006086 9.9e-95 351.3 418 51.4
THA.LOC104821834 Tarenaya hassleriana HOM05D005181 ORTHO05D006086 3.2e-93 346.3 431 50.6
Carub.0007s2150 Capsella rubella HOM05D005181 ORTHO05D006086 9.2e-93 344.7 386 54.7
Sp7g18220 Schrenkiella parvula HOM05D005181 ORTHO05D006086 3.6e-89 332.8 427 48.5
Carub.0003s1783 Capsella rubella HOM05D005181 ORTHO05D006086 1.2e-87 327.8 256 67.6
Cpa.g.sc3.430 Carica papaya HOM05D005181 ORTHO05D006086 1.0e-75 288.1 438 42.2
Manes.14G168800 Manihot esculenta HOM05D005181 ORTHO05D006086 2.5e-74 283.5 413 41.4
CiPaw.15G139300 Carya illinoinensis HOM05D005181 ORTHO05D006086 3.6e-73 279.6 413 41.4
Atru.chr9.956 Acer truncatum HOM05D005181 ORTHO05D006086 3.8e-70 269.6 432 41.2
Ciclev10007362m.g Citrus clementina HOM05D005181 ORTHO05D006086 2.1e-68 263.8 263 52.5
Duzib205G1340 Durio zibethinus HOM05D005181 ORTHO05D006086 2.1e-68 263.8 426 40.8
TWI81G0236 Tripterygium wilfordii HOM05D005181 ORTHO05D006086 2.1e-68 263.8 418 40.4
Lj2g0017806 Lotus japonicus HOM05D005181 ORTHO05D006086 6.0e-68 262.3 401 39.4
TAR622G0602 Trochodendron aralioides HOM05D005181 ORTHO05D006086 6.0e-68 262.3 424 40.6
Medtr6g080360 Medicago truncatula HOM05D005181 ORTHO05D006086 1.8e-67 260.8 407 40.8
MD14G1233900 Malus domestica HOM05D005181 ORTHO05D006086 6.7e-67 258.8 400 44.0
Potri.015G041500 Populus trichocarpa HOM05D005181 ORTHO05D006086 1.1e-66 258.1 407 41.8
TWI60G1411 Tripterygium wilfordii HOM05D005181 ORTHO05D006086 2.5e-66 256.9 419 38.7
Haze_18792 Corylus avellana HOM05D005181 ORTHO05D006086 3.3e-66 256.5 443 39.1
RcHm_v2.0_Chr7g0178781 Rosa chinensis HOM05D005181 ORTHO05D006086 5.6e-66 255.8 407 41.0
Cfa019696 Carpinus fangiana HOM05D005181 ORTHO05D006086 7.4e-66 255.4 421 39.0
TPR.G21383 Trifolium pratense HOM05D005181 ORTHO05D006086 7.4e-66 255.4 408 39.5
FAN08G2561 Fragaria x ananassa HOM05D005181 ORTHO05D006086 9.6e-66 255.0 403 40.9
FAN04G2630 Fragaria x ananassa HOM05D005181 ORTHO05D006086 1.3e-65 254.6 404 40.1
QL10p027571 Quercus lobata HOM05D005181 ORTHO05D006086 2.8e-65 253.4 346 43.9
Sabra15G0055600 Salix brachista HOM05D005181 ORTHO05D006086 4.0e-64 249.6 426 39.2
Rhsim13G0100900 Rhododendron simsii HOM05D005181 ORTHO05D006086 6.9e-64 248.8 344 43.9
Prupe.5G230100 Prunus persica HOM05D005181 ORTHO05D006086 1.2e-63 248.1 398 39.7
Dinv24641 Davidia involucrata HOM05D005181 ORTHO05D006086 3.4e-63 246.5 328 45.4
FAN18G0354 Fragaria x ananassa HOM05D005181 ORTHO05D006086 1.7e-62 244.2 394 40.9
PGR083G0229 Punica granatum HOM05D005181 ORTHO05D006086 1.7e-62 244.2 416 38.7
Actinidia37888 Actinidia chinensis HOM05D005181 ORTHO05D006086 6.5e-62 242.3 419 39.9
FAN13G0793 Fragaria x ananassa HOM05D005181 ORTHO05D006086 8.4e-62 241.9 396 40.2
FvH4_5g17070 Fragaria vesca HOM05D005181 ORTHO05D006086 1.1e-61 241.5 394 41.1
Cc04_g06620 Coffea canephora HOM05D002288 ORTHO05D002894 1.4e-61 241.1 420 37.1
Aqoxy3G00439 Aquilegia oxysepala HOM05D005181 ORTHO05D006086 1.9e-61 240.7 415 39.5
Gorai.008G288900 Gossypium raimondii HOM05D005181 ORTHO05D006086 1.9e-61 240.7 419 37.7
Gohir.D12G268700 Gossypium hirsutum HOM05D005181 ORTHO05D006086 2.5e-61 240.4 408 39.0
PSO675G7584 Papaver somniferum HOM05D005181 ORTHO05D006086 7.1e-61 238.8 412 38.1
Lalb_Chr22g0353341 Lupinus albus HOM05D005181 ORTHO05D006086 2.1e-60 237.3 359 40.9
Lj5A154G68 Lonicera japonica HOM05D005181 ORTHO05D006086 4.6e-60 236.1 429 37.1
CANSAT80G2311 Cannabis sativa HOM05D005181 ORTHO05D006086 2.3e-59 233.8 399 39.3
CANSAT80G0160 Cannabis sativa HOM05D005181 ORTHO05D006086 3.0e-59 233.4 399 39.3
Glyma.09G178000 Glycine max HOM05D005181 ORTHO05D006086 3.0e-59 233.4 413 39.5
SGA_v2.0_scaffold168G38494 Striga asiatica HOM05D005181 ORTHO05D006086 8.7e-59 231.9 432 37.0
ECA233G2213 Erigeron canadensis HOM05D005181 ORTHO05D006086 1.1e-58 231.5 415 38.3
Migut.D01451 Erythranthe guttata HOM05D005181 ORTHO05D006086 3.3e-58 229.9 423 36.4
Nn4g24098 Nelumbo nucifera HOM05D005181 ORTHO05D006086 5.7e-58 229.2 285 45.6
SalBow1G8605 Salvia bowleyana HOM05D005181 ORTHO05D006086 5.7e-58 229.2 414 38.6
GSVIVG01008395001 Vitis vinifera HOM05D002288 ORTHO05D006086 5.7e-58 229.2 421 36.6
VMungo0251G3066 Vigna mungo HOM05D001910 ORTHO05D006086 7.4e-58 228.8 417 39.3
Eucgr.B00857 Eucalyptus grandis HOM05D005181 ORTHO05D006086 9.6e-58 228.4 352 40.1
Peaxi162Scf00683g00242 Petunia axillaris HOM05D005181 ORTHO05D006086 9.6e-58 228.4 397 39.5
MBI10_g07295_MAGBIO Magnolia biondii HOM05D005181 ORTHO05D006086 2.1e-57 227.3 438 37.0
MELO3C016456.2 Cucumis melo HOM05D005181 ORTHO05D006086 6.3e-57 225.7 408 37.5
Psat1g033720 Pisum sativum HOM05D005181 ORTHO05D006086 1.1e-56 224.9 413 38.0
Phvul.004G151600 Phaseolus vulgaris HOM05D005181 ORTHO05D006086 4.1e-56 223.0 414 38.4
unitig_736.g22463 Utricularia gibba HOM05D005181 ORTHO05D006086 9.0e-56 221.9 411 37.7
Phvul.003G004600 Phaseolus vulgaris HOM05D005181 ORTHO05D006086 5.9e-55 219.2 285 44.6
arahy.Tifrunner.gnm1.ann1.UX5VDV Arachis hypogaea HOM05D005181 ORTHO05D006086 1.3e-54 218.0 400 37.0
CsaV3_3G006700 Cucumis sativus L. HOM05D005181 ORTHO05D006086 1.3e-54 218.0 368 38.3
PSO541G5122 Papaver somniferum HOM05D005181 ORTHO05D006086 1.3e-54 218.0 404 37.6
Sed0017978 Sechium edule HOM05D005181 ORTHO05D006086 1.3e-54 218.0 397 34.8
Solyc03g119050.4 Solanum lycopersicum HOM05D005181 ORTHO05D006086 2.9e-54 216.9 405 37.8
arahy.Tifrunner.gnm1.ann1.QZK539 Arachis hypogaea HOM05D005181 ORTHO05D006086 3.8e-54 216.5 399 36.8
HanXRQChr05g0140931 Helianthus annuus HOM05D005181 ORTHO05D006086 3.5e-52 209.9 415 35.4
Glyma.07G100700 Glycine max HOM05D005181 ORTHO05D006086 4.6e-52 209.5 358 38.3
Nitab4.5_0012734g0010 Nicotiana tabacum HOM05D005181 ORTHO05D006086 1.8e-51 207.6 405 36.5
ClCG05G014580 Citrullus lanatus HOM05D005181 ORTHO05D006086 3.9e-51 206.5 317 39.1
Nitab4.5_0001158g0050 Nicotiana tabacum HOM05D005181 ORTHO05D006086 1.9e-50 204.1 423 35.5
Lsat_1_v5_gn_8_145621 Lactuca sativa HOM05D005181 ORTHO05D006086 5.7e-50 202.6 433 34.9
CAN.G1129.29 Capsicum annuum HOM05D005181 ORTHO05D006086 3.7e-49 199.9 306 39.2
vmacro07281 Vaccinium macrocarpon HOM05D005181 ORTHO05D006086 1.4e-48 198.0 586 29.2
HPP92_001896 Vanilla planifolia HOM05D005181 ORTHO05D006086 3.1e-48 196.8 425 34.1
Zm00001eb299750 Zea mays HOM05D005181 ORTHO05D006086 5.3e-48 196.1 281 38.4
vmacro17791 Vaccinium macrocarpon HOM05D005181 ORTHO05D006086 2.0e-47 194.1 403 37.5
COL.COLO4_21587 Corchorus olitorius HOM05D005181 ORTHO05D006086 2.2e-46 190.7 406 36.2
Thecc.03G047800 Theobroma cacao HOM05D005181 ORTHO05D006086 2.2e-46 190.7 210 47.6
Sopen03g037940 Solanum pennellii HOM05D005181 ORTHO05D006086 2.9e-46 190.3 405 36.0
vmacro09847 Vaccinium macrocarpon HOM05D005181 ORTHO05D006086 6.5e-46 189.1 232 44.8
BolC5t33452H Brassica oleracea HOM05D001086 ORTHO05D009904 3.2e-45 186.8 151 64.9
HanXRQChr07g0206911 Helianthus annuus HOM05D005181 ORTHO05D006086 7.9e-44 182.2 272 40.8
Sc06g0002030 Simmondsia chinensis HOM05D005181 ORTHO05D006086 3.9e-43 179.9 288 40.6
SEGI_11728 Sequoiadendron giganteum HOM05D005181 ORTHO05D006086 6.7e-43 179.1 329 35.6
Gohir.A12G268300 Gossypium hirsutum HOM05D005181 ORTHO05D006086 1.5e-42 177.9 211 45.0
Ah.12g061970 Amaranthus hybridus HOM05D005181 ORTHO05D006086 7.4e-42 175.6 278 37.8
AUR62036514 Chenopodium quinoa HOM05D005181 ORTHO05D006086 1.3e-41 174.9 281 37.0
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 1.4e-40 171.4 261 37.9
Aqoxy3G03966 Aquilegia oxysepala HOM05D005181 ORTHO05D006086 6.9e-40 169.1 351 31.9
Hma1.2p1_0669F.1_g200310 Hydrangea macrophylla HOM05D005181 ORTHO05D006086 6.5e-38 162.5 161 50.9
AUR62037061 Chenopodium quinoa HOM05D005181 ORTHO05D006086 3.2e-37 160.2 384 29.7
Oeu040446.1 Olea europaea HOM05D005181 ORTHO05D006086 1.1e-32 145.2 414 31.6
BcaC05g28619 Brassica carinata HOM05D008116 ORTHO05D006086 1.9e-29 134.4 120 60.0
ATR0326G048 Amborella trichopoda HOM05D005181 ORTHO05D006086 7.2e-29 132.5 372 31.2
CDE09G1365 Ceratophyllum demersum HOM05D005181 ORTHO05D006086 7.2e-29 132.5 157 42.7
BcaNung01761 Brassica carinata HOM05D005181 ORTHO05D006086 1.0e-27 128.6 131 50.4
Mapoly0061s0069 Marchantia polymorpha HOM05D005181 ORTHO05D006086 3.7e-25 120.2 248 32.3
C05p47270 Brassica napus HOM05D005181 ORTHO05D006086 8.2e-25 119.0 126 54.0
SGA_v2.0_scaffold75G25014 Striga asiatica HOM05D005181 ORTHO05D006086 1.3e-22 111.7 326 30.7
Pp3c13_8880 Physcomitrium patens HOM05D005181 ORTHO05D006086 8.5e-22 109.0 256 28.9
TPR.G22856 Trifolium pratense HOM05D005181 ORTHO05D006086 1.9e-21 107.8 140 42.1
DCAR_005622 Daucus carota HOM05D005181 ORTHO05D006086 2.3e-19 100.9 179 35.2
CDE09G1040 Ceratophyllum demersum HOM05D005181 ORTHO05D034271 2.4e-16 90.9 222 30.6
Hma1.2p1_0669F.1_g200300 Hydrangea macrophylla HOM05D005181 ORTHO05D006086 7.0e-16 89.4 155 38.1
VMungo0464G1729 Vigna mungo HOM05D005181 ORTHO05D006086 7.0e-16 89.4 249 35.3
RcHm_v2.0_Chr7g0230201 Rosa chinensis HOM05D005181 ORTHO05D006086 5.0e-14 83.2 113 37.2
CDE09G1004 Ceratophyllum demersum HOM05D005181 ORTHO05D034271 1.8e-11 74.7 222 28.8
HPP92_001875 Vanilla planifolia HOM05D005181 ORTHO05D006086 1.3e-09 68.6 86 40.7
PGSC0003DMG400005657 Solanum tuberosum HOM05D005181 ORTHO05D006086 1.8e-08 64.7 67 44.8
TPR.G14603 Trifolium pratense HOM05D005181 ORTHO05D006086 2.0e-07 61.2 39 61.5
TPR.G22861 Trifolium pratense HOM05D000264 ORTHO05D000152 2.0e-07 61.2 79 41.8
Sabra15G0063200 Salix brachista HOM05D005181 ORTHO05D006086 1.0e-06 58.9 41 58.5


User provided reference genes

Program Settings