Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 0.0e+00 1365.1 703 100.0
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 0.0e+00 1357.0 704 99.7
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 0.0e+00 1238.0 711 91.7
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 0.0e+00 1203.0 712 90.9
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.7e-251 872.8 731 67.0
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 5.9e-228 794.7 733 62.8
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 5.2e-216 755.0 717 61.9
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 2.1e-212 743.0 723 60.0
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.1e-210 737.3 695 60.4
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 5.1e-155 552.4 647 53.5
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.8e-128 464.2 739 43.2
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 6.4e-113 412.5 497 49.5
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 5.0e-110 402.9 404 57.4
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 2.1e-108 397.5 386 58.0
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 3.6e-108 396.7 389 57.6
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.0e-107 395.2 385 57.1
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 1.0e-107 395.2 422 55.7
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 4.0e-107 393.3 385 56.1
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 5.8e-106 389.4 397 57.2
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 5.8e-106 389.4 575 45.4
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 5.8e-106 389.4 397 57.2
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.3e-105 388.3 436 53.0
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 2.3e-102 377.5 563 45.6
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 1.4e-99 368.2 697 39.7
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 1.4e-75 288.5 476 39.3
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 3.1e-75 287.3 464 39.7
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 5.8e-74 283.1 468 39.3
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.7e-73 281.6 486 38.1
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 4.9e-73 280.0 492 37.2
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.9e-72 278.1 485 38.1
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 1.9e-72 278.1 485 38.1
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 1.6e-71 275.0 497 36.8
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.1e-71 274.6 417 42.4
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 3.5e-71 273.9 554 35.7
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.0e-71 273.1 442 39.6
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 5.1e-70 270.0 584 34.1
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 6.7e-70 269.6 650 34.0
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 9.6e-69 265.8 453 38.0
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 8.1e-68 262.7 475 36.0
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.1e-67 262.3 463 37.4
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 1.8e-67 261.5 661 32.8
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 5.3e-67 260.0 520 36.3
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 9.0e-67 259.2 441 36.7
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 1.2e-66 258.8 463 35.2
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 5.8e-66 256.5 486 37.2
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 7.6e-66 256.1 564 34.6
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 9.9e-66 255.8 469 34.5
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 2.2e-65 254.6 483 35.6
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 2.2e-65 254.6 449 37.6
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 2.2e-65 254.6 485 36.3
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 3.8e-65 253.8 483 35.4
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 4.9e-65 253.4 511 34.1
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 6.4e-65 253.1 716 31.7
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 6.4e-65 253.1 507 34.3
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 6.4e-65 253.1 415 37.3
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 8.4e-65 252.7 631 33.4
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.4e-64 251.1 413 38.5
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.6e-63 248.4 419 36.5
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 2.1e-63 248.1 425 37.2
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 3.5e-63 247.3 626 31.3
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 4.6e-63 246.9 719 30.3
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.3e-62 245.4 436 33.9
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 3.9e-62 243.8 482 32.8
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 3.9e-62 243.8 677 32.1
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 8.7e-62 242.7 443 36.8
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.1e-61 242.3 484 35.1
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.3e-61 240.7 394 39.6
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 5.6e-61 240.0 568 32.7
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 7.4e-61 239.6 649 29.7
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 1.6e-60 238.4 562 31.1
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 1.6e-60 238.4 412 36.4
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 2.8e-60 237.7 491 32.8
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 3.7e-60 237.3 595 33.3
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 6.2e-60 236.5 649 31.1
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 1.1e-59 235.7 526 33.3
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.4e-59 235.3 738 30.8
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 1.8e-59 235.0 759 30.3
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.4e-59 234.6 754 29.6
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 4.0e-59 233.8 588 32.5
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 6.9e-59 233.0 677 31.2
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 6.9e-59 233.0 734 30.7
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 9.0e-59 232.6 419 36.8
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 1.2e-58 232.3 595 31.9
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 2.6e-58 231.1 651 30.1
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 5.8e-58 229.9 448 34.6
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 7.6e-58 229.6 404 35.9
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 1.0e-57 229.2 467 35.5
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.7e-57 228.4 760 30.0
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 2.2e-57 228.0 593 31.5
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.2e-57 228.0 487 34.7
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 8.4e-57 226.1 651 31.8
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 1.9e-56 224.9 560 31.8
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 2.5e-56 224.6 391 36.1
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 2.5e-56 224.6 422 36.0
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 3.2e-56 224.2 661 30.1
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 4.2e-56 223.8 432 35.6
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 5.5e-56 223.4 607 30.8
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 7.1e-56 223.0 543 34.1
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 1.2e-55 222.2 665 31.6
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 1.6e-55 221.9 439 35.1
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.6e-55 221.9 486 32.5
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 4.6e-55 220.3 453 34.0
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 6.0e-55 219.9 509 33.8
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 7.9e-55 219.5 465 32.5
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 7.9e-55 219.5 492 31.9
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 7.9e-55 219.5 600 32.0
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 1.8e-54 218.4 416 34.6
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.8e-54 218.4 649 30.8
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 3.9e-54 217.2 489 31.9
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 5.1e-54 216.9 626 33.1
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 5.1e-54 216.9 667 31.0
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 5.1e-54 216.9 361 38.0
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 1.6e-52 211.8 654 30.7
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.3e-52 209.9 582 30.9
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.8e-51 208.4 618 31.4
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 3.1e-51 207.6 411 35.8
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 6.9e-51 206.5 652 29.1
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 1.0e-49 202.6 703 28.9
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 1.7e-49 201.8 449 32.1
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 2.9e-49 201.1 462 30.5
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.2e-47 195.7 384 33.9
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 1.0e-46 192.6 611 28.8
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 2.2e-44 184.9 401 30.9
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 1.7e-41 175.3 676 28.7
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 5.0e-41 173.7 214 43.5
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 8.5e-41 172.9 362 33.7
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 1.8e-38 165.2 721 27.6
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 3.3e-37 161.0 648 28.7
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 2.8e-36 157.9 208 40.4
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 3.1e-35 154.5 168 56.0
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 6.9e-35 153.3 562 30.6
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 3.4e-34 151.0 164 56.1
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 7.7e-34 149.8 548 28.6
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 6.5e-33 146.7 443 30.9
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 2.5e-32 144.8 124 58.1
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 7.4e-29 133.3 218 34.9
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 4.8e-28 130.6 250 34.4
BcaB06g28413 Brassica carinata HOM05D004295 ORTHO05D004901 1.4e-27 129.0 158 51.9
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 1.8e-27 128.6 400 30.2
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 8.5e-25 119.8 635 26.3
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 3.2e-24 117.9 82 72.0
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.7e-23 114.8 248 32.7
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 1.4e-22 112.5 116 53.4
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 5.2e-22 110.5 262 35.1
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 6.7e-22 110.2 739 22.3
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 3.3e-21 107.8 116 50.9
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 9.7e-21 106.3 257 34.6
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 7.0e-19 100.1 91 53.8
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.5e-18 97.8 94 54.3
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.0e-17 96.3 102 44.1
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 6.8e-14 83.6 361 23.0
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.0e-13 82.0 99 40.4
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 5.7e-13 80.5 175 35.4
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.2e-12 78.6 68 44.1
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.0e-09 69.7 66 36.4
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 3.8e-09 67.8 350 21.1
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 5.0e-09 67.4 52 61.5
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 1.6e-07 62.4 201 24.4
AagrBONN_evm.TU.Sc2ySwM_344.2808 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.8e-06 58.9 324 24.1
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-06 58.5 62 38.7


User provided reference genes

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