Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33089H Brassica oleracea HOM05D001306 ORTHO05D031970 1.1e-40 169.5 79 100.0
BcaC05g28312 Brassica carinata HOM05D001306 ORTHO05D031970 3.7e-38 161.0 78 94.9
C05p43730 Brassica napus HOM05D001306 ORTHO05D031970 4.6e-36 154.1 90 83.3
Thhalv10020212m.g Eutrema salsugineum HOM05D001306 ORTHO05D001159 1.1e-34 149.4 78 87.2
Sp3g18600 Schrenkiella parvula HOM05D001306 ORTHO05D001159 7.3e-34 146.7 78 83.3
BcaB04g20644 Brassica carinata HOM05D001306 ORTHO05D001159 6.2e-33 143.7 78 82.1
A01p34220 Brassica napus HOM05D001306 ORTHO05D001159 8.1e-33 143.3 78 82.1
BcaC09g49002 Brassica carinata HOM05D001306 ORTHO05D001159 1.1e-32 142.9 78 80.8
BraA01t03522Z Brassica rapa HOM05D001306 ORTHO05D001159 3.1e-32 141.4 78 80.8
AL3G34440 Arabidopsis lyrata HOM05D001306 ORTHO05D001159 2.0e-31 138.7 78 79.5
Carub.0003s2056 Capsella rubella HOM05D001306 ORTHO05D001159 2.6e-31 138.3 70 87.1
BcaB04g19116 Brassica carinata HOM05D001306 ORTHO05D001159 3.4e-31 137.9 78 82.1
BcaB06g26123 Brassica carinata HOM05D001306 ORTHO05D001159 4.4e-31 137.5 69 91.3
C01p43610 Brassica napus HOM05D001306 ORTHO05D001159 5.8e-31 137.1 78 76.9
BolC1t04322H Brassica oleracea HOM05D001306 ORTHO05D001159 5.8e-31 137.1 78 76.9
AT3G20580 Arabidopsis thaliana HOM05D001306 ORTHO05D001159 9.9e-31 136.3 78 76.9
BraA03t13336Z Brassica rapa HOM05D001306 ORTHO05D001159 2.2e-30 135.2 79 79.7
A03p41830 Brassica napus HOM05D001306 ORTHO05D001159 4.9e-30 134.0 79 78.5
BcaC01g03547 Brassica carinata HOM05D001306 ORTHO05D001159 6.4e-30 133.7 69 89.9
C03p51210 Brassica napus HOM05D001306 ORTHO05D001159 6.4e-30 133.7 69 89.9
BolC3t17411H Brassica oleracea HOM05D001306 ORTHO05D001159 6.4e-30 133.7 69 89.9
CARHR096370 Cardamine hirsuta HOM05D001306 ORTHO05D001159 3.2e-21 104.8 70 74.3
THA.LOC104798780 Tarenaya hassleriana HOM05D001306 ORTHO05D001159 1.3e-19 99.4 82 59.8
THA.LOC104816922 Tarenaya hassleriana HOM05D001306 ORTHO05D001159 8.7e-19 96.7 82 54.9
Aa31LG8G7390 Aethionema arabicum HOM05D001306 ORTHO05D001159 2.6e-15 85.1 69 62.3
Solyc10g006450.3 Solanum lycopersicum HOM05D001306 ORTHO05D001159 2.3e-11 72.0 70 45.7
Sopen10g002400 Solanum pennellii HOM05D001306 ORTHO05D001159 3.9e-11 71.2 70 45.7
Nitab4.5_0002342g0060 Nicotiana tabacum HOM05D001306 ORTHO05D001159 3.3e-10 68.2 72 48.6
CAN.G1110.5 Capsicum annuum HOM05D001306 ORTHO05D001159 4.3e-10 67.8 72 45.8
Peaxi162Scf00407g00039 Petunia axillaris HOM05D001306 ORTHO05D001159 7.4e-10 67.0 70 50.0
TWI39G0978 Tripterygium wilfordii HOM05D001306 ORTHO05D001159 7.4e-10 67.0 72 45.8
Aa31LG3G10700 Aethionema arabicum HOM05D001306 ORTHO05D001159 9.6e-10 66.6 57 56.1
Nitab4.5_0002229g0150 Nicotiana tabacum HOM05D001306 ORTHO05D001159 1.3e-09 66.2 71 47.9
PGSC0003DMG400014428 Solanum tuberosum HOM05D001306 ORTHO05D001159 1.3e-09 66.2 69 42.0
MD03G1209900 Malus domestica HOM05D001306 ORTHO05D001159 2.1e-09 65.5 74 40.5
MELO3C018094.2 Cucumis melo HOM05D001306 ORTHO05D001159 3.7e-09 64.7 63 52.4
Nitab4.5_0008018g0010 Nicotiana tabacum HOM05D001306 ORTHO05D001159 3.7e-09 64.7 70 42.9
CiPaw.11G185000 Carya illinoinensis HOM05D001306 ORTHO05D001159 4.8e-09 64.3 79 39.2
Sabra16G0284500 Salix brachista HOM05D001306 ORTHO05D001159 6.2e-09 63.9 73 46.6
CAN.G337.96 Capsicum annuum HOM05D001306 ORTHO05D001159 1.4e-08 62.8 70 41.4
Potri.001G419000 Populus trichocarpa HOM05D001306 ORTHO05D001159 1.4e-08 62.8 73 45.2
Duzib213G0807 Durio zibethinus HOM05D001306 ORTHO05D001159 3.1e-08 61.6 69 43.5
Thecc.07G050500 Theobroma cacao HOM05D001306 ORTHO05D001159 4.0e-08 61.2 69 46.4
Peaxi162Scf00450g00875 Petunia axillaris HOM05D001306 ORTHO05D001159 5.3e-08 60.8 69 47.8
Solyc07g064200.4 Solanum lycopersicum HOM05D001306 ORTHO05D001159 6.9e-08 60.5 69 43.5
PGSC0003DMG400001032 Solanum tuberosum HOM05D001306 ORTHO05D001159 6.9e-08 60.5 69 44.9
Potri.011G135200 Populus trichocarpa HOM05D001306 ORTHO05D001159 9.0e-08 60.1 73 50.7
Duzib268G1798 Durio zibethinus HOM05D001306 ORTHO05D001159 1.2e-07 59.7 76 40.8
Migut.M01800 Erythranthe guttata HOM05D001306 ORTHO05D001159 1.2e-07 59.7 69 39.1
MD11G1224600 Malus domestica HOM05D001306 ORTHO05D001159 1.5e-07 59.3 70 38.6
Nitab4.5_0013434g0010 Nicotiana tabacum HOM05D001306 ORTHO05D001159 1.5e-07 59.3 69 40.6
Sed0018984 Sechium edule HOM05D001306 ORTHO05D001159 1.5e-07 59.3 73 43.8
Sopen07g032340 Solanum pennellii HOM05D001306 ORTHO05D001159 1.5e-07 59.3 69 43.5
TAR624G0946 Trochodendron aralioides HOM05D001306 ORTHO05D001159 2.6e-07 58.5 69 43.5
RcHm_v2.0_Chr5g0037811 Rosa chinensis HOM05D001306 ORTHO05D001159 3.4e-07 58.2 71 42.3
Cfa020403 Carpinus fangiana HOM05D001306 ORTHO05D001159 4.5e-07 57.8 50 56.0
Haze_09630 Corylus avellana HOM05D001306 ORTHO05D001159 5.8e-07 57.4 61 47.5
Nn1g07059 Nelumbo nucifera HOM05D001306 ORTHO05D001159 7.6e-07 57.0 69 43.5
QL08p012745 Quercus lobata HOM05D001306 ORTHO05D001159 7.6e-07 57.0 79 41.8
QL08p012872 Quercus lobata HOM05D001306 ORTHO05D001159 7.6e-07 57.0 79 41.8
CSS0035693 Camellia sinensis var. sinensis HOM05D001306 ORTHO05D001159 1.3e-06 56.2 72 43.1
Ah.04g165570 Amaranthus hybridus HOM05D001306 ORTHO05D001159 1.7e-06 55.8 83 38.6
AUR62020534 Chenopodium quinoa HOM05D001306 ORTHO05D001159 1.7e-06 55.8 93 33.3
Cc02_g11570 Coffea canephora HOM05D001306 ORTHO05D001159 1.7e-06 55.8 63 46.0
COL.COLO4_09588 Corchorus olitorius HOM05D001306 ORTHO05D001159 1.7e-06 55.8 53 52.8
Eucgr.F03435 Eucalyptus grandis HOM05D001306 ORTHO05D001159 1.7e-06 55.8 47 48.9
Actinidia35325 Actinidia chinensis HOM05D001306 ORTHO05D001159 2.9e-06 55.1 70 40.0
A08p20530 Brassica napus HOM05D001306 ORTHO05D001159 2.9e-06 55.1 65 47.7
BraA08t34009Z Brassica rapa HOM05D001306 ORTHO05D001159 2.9e-06 55.1 65 47.7
SHI31834 Sapria himalayana HOM05D001306 ORTHO05D001159 2.9e-06 55.1 69 40.6
Atru.chr2.3230 Acer truncatum HOM05D001306 ORTHO05D001159 3.8e-06 54.7 56 46.4
AUR62015669 Chenopodium quinoa HOM05D001306 ORTHO05D001159 3.8e-06 54.7 93 33.3
Sc03g0008880 Simmondsia chinensis HOM05D001306 ORTHO05D001159 3.8e-06 54.7 97 37.1
unitig_0.g1055 Utricularia gibba HOM05D001306 ORTHO05D001159 3.8e-06 54.7 68 41.2
EL10Ac4g07939 Beta vulgaris HOM05D001306 ORTHO05D001159 4.9e-06 54.3 95 34.7
Nn1g03609 Nelumbo nucifera HOM05D001306 ORTHO05D001159 4.9e-06 54.3 69 40.6
BcaC09g50616 Brassica carinata HOM05D001306 ORTHO05D001159 6.4e-06 53.9 65 44.6
C01p23250 Brassica napus HOM05D001306 ORTHO05D001159 6.4e-06 53.9 65 44.6
BolC1t02258H Brassica oleracea HOM05D001306 ORTHO05D001159 6.4e-06 53.9 65 44.6
Ca_01739_v3 Cicer arietinum L. HOM05D001306 ORTHO05D001159 6.4e-06 53.9 62 45.2
SGA_v2.0_scaffold22G09783 Striga asiatica HOM05D001306 ORTHO05D001159 8.4e-06 53.5 50 48.0


User provided reference genes

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