Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p42440 Brassica napus HOM05D000169 ORTHO05D042828 4.0e-31 137.5 72 100.0
BolC5t32973H Brassica oleracea HOM05D000169 ORTHO05D042828 4.0e-31 137.5 72 100.0
A03p42140 Brassica napus HOM05D000169 ORTHO05D001214 5.9e-14 80.5 51 82.4
BolC3t17441H Brassica oleracea HOM05D000169 ORTHO05D021745 5.9e-14 80.5 51 82.4
BraA03t13367Z Brassica rapa HOM05D000169 ORTHO05D001214 5.9e-14 80.5 51 82.4
Sp3g19250 Schrenkiella parvula HOM05D000169 ORTHO05D001214 5.9e-14 80.5 51 84.3
BcaB04g19157 Brassica carinata HOM05D000169 ORTHO05D021745 1.3e-13 79.3 51 80.4
Thhalv10000513m.g Eutrema salsugineum HOM05D000169 ORTHO05D021745 1.3e-13 79.3 47 87.2
Sp3g19240 Schrenkiella parvula HOM05D000169 ORTHO05D001214 1.7e-13 79.0 51 82.4
C03p51580 Brassica napus HOM05D000169 ORTHO05D021745 2.2e-13 78.6 51 82.4
Thhalv10020439m.g Eutrema salsugineum HOM05D000169 ORTHO05D001214 1.9e-12 75.5 51 78.4
BcaB04g19154 Brassica carinata HOM05D000169 ORTHO05D001214 7.2e-12 73.6 51 78.4
A03p42110 Brassica napus HOM05D000169 ORTHO05D001214 7.2e-12 73.6 51 78.4
BolC3t17440H Brassica oleracea HOM05D000169 ORTHO05D001214 7.2e-12 73.6 51 78.4
BraA03t13366Z Brassica rapa HOM05D000169 ORTHO05D001214 7.2e-12 73.6 51 78.4
Sp3g19230 Schrenkiella parvula HOM05D000169 ORTHO05D001214 7.2e-12 73.6 51 78.4
Aa31LG8G7930 Aethionema arabicum HOM05D000169 ORTHO05D001214 1.2e-11 72.8 51 74.5
AL3G35260 Arabidopsis lyrata HOM05D000169 ORTHO05D001214 1.2e-11 72.8 51 76.5
AT3G21230 Arabidopsis thaliana HOM05D000169 ORTHO05D001214 1.2e-11 72.8 51 76.5
Carub.0003s2120 Capsella rubella HOM05D000169 ORTHO05D001214 1.2e-11 72.8 51 76.5
Thhalv10020403m.g Eutrema salsugineum HOM05D000169 ORTHO05D001214 1.2e-11 72.8 51 76.5
BcaB04g20600 Brassica carinata HOM05D000169 ORTHO05D021745 1.6e-11 72.4 51 74.5
BcaNung05293 Brassica carinata HOM05D000169 ORTHO05D000542 1.6e-11 72.4 51 74.5
A05p27450 Brassica napus HOM05D000169 ORTHO05D001214 1.6e-11 72.4 51 76.5
BraA05t21636Z Brassica rapa HOM05D000169 ORTHO05D001214 1.6e-11 72.4 51 76.5
BcaC01g03516 Brassica carinata HOM05D000169 ORTHO05D001214 2.1e-11 72.0 51 76.5
C03p51550 Brassica napus HOM05D000169 ORTHO05D001214 2.1e-11 72.0 51 76.5
CARHR097130 Cardamine hirsuta HOM05D000169 ORTHO05D001214 2.1e-11 72.0 51 74.5
BcaC05g28272 Brassica carinata HOM05D000169 ORTHO05D001214 2.7e-11 71.6 51 74.5
C05p42450 Brassica napus HOM05D000169 ORTHO05D021745 2.7e-11 71.6 51 74.5
BolC5t32974H Brassica oleracea HOM05D000169 ORTHO05D001214 2.7e-11 71.6 51 74.5
Thhalv10020406m.g Eutrema salsugineum HOM05D000169 ORTHO05D001214 2.7e-11 71.6 51 76.5
BcaB06g26203 Brassica carinata HOM05D000169 ORTHO05D007079 4.6e-11 70.9 51 74.5
BcaC05g28268 Brassica carinata HOM05D000169 ORTHO05D001214 6.1e-11 70.5 51 70.6
C05p42480 Brassica napus HOM05D000169 ORTHO05D001214 6.1e-11 70.5 51 70.6
BolC5t32977H Brassica oleracea HOM05D000169 ORTHO05D001214 6.1e-11 70.5 51 70.6
A05p27470 Brassica napus HOM05D000169 ORTHO05D001214 1.0e-10 69.7 51 70.6
BraA05t21638Z Brassica rapa HOM05D000169 ORTHO05D001214 1.0e-10 69.7 51 70.6
BcaB06g26209 Brassica carinata HOM05D000169 ORTHO05D001214 1.4e-10 69.3 51 74.5
THA.LOC104817929 Tarenaya hassleriana HOM05D000169 ORTHO05D001214 7.4e-09 63.5 51 64.7
Ah.09g229790 Amaranthus hybridus HOM05D000169 ORTHO05D001214 1.3e-08 62.8 51 56.9
CSS0016246 Camellia sinensis var. sinensis HOM05D000169 ORTHO05D001214 2.2e-08 62.0 51 58.8
BcaB06g26210 Brassica carinata HOM05D000169 ORTHO05D001214 2.8e-08 61.6 55 63.6
Duzib235G1393 Durio zibethinus HOM05D000169 ORTHO05D001214 3.7e-08 61.2 51 56.9
THA.LOC104815164 Tarenaya hassleriana HOM05D000169 ORTHO05D001214 4.8e-08 60.8 51 56.9
BraA05t21639Z Brassica rapa HOM05D000125 ORTHO05D000120 6.3e-08 60.5 41 73.2
Gohir.A05G142500 Gossypium hirsutum HOM05D000169 ORTHO05D001214 8.2e-08 60.1 52 55.8
Gohir.D05G144800 Gossypium hirsutum HOM05D000169 ORTHO05D001214 8.2e-08 60.1 52 55.8
Gorai.009G148700 Gossypium raimondii HOM05D000169 ORTHO05D001214 8.2e-08 60.1 52 55.8
Aqoxy7G03083 Aquilegia oxysepala HOM05D000169 ORTHO05D001214 1.1e-07 59.7 51 54.9
Duzib192G0703 Durio zibethinus HOM05D000169 ORTHO05D001214 1.1e-07 59.7 51 56.9
Manes.11G071800 Manihot esculenta HOM05D000169 ORTHO05D001214 1.1e-07 59.7 51 54.9
Thecc.06G132100 Theobroma cacao HOM05D000169 ORTHO05D001214 1.1e-07 59.7 51 56.9
Aa31LG10G3110 Aethionema arabicum HOM05D000169 ORTHO05D001214 1.4e-07 59.3 51 56.9
Ah.14g083890 Amaranthus hybridus HOM05D000169 ORTHO05D001214 1.4e-07 59.3 51 52.9
CARHR041840 Cardamine hirsuta HOM05D000169 ORTHO05D001214 1.4e-07 59.3 51 56.9
Duzib160G0899 Durio zibethinus HOM05D000169 ORTHO05D001214 1.4e-07 59.3 51 54.9
EL10Ac8g18275 Beta vulgaris HOM05D000169 ORTHO05D001214 1.8e-07 58.9 51 52.9
Duzib192G0682 Durio zibethinus HOM05D000169 ORTHO05D001214 1.8e-07 58.9 51 56.9
Hund09024 Selenicereus undatus HOM05D000169 ORTHO05D001214 1.8e-07 58.9 51 56.9
Hund26355 Selenicereus undatus HOM05D000169 ORTHO05D001214 1.8e-07 58.9 51 52.9
AL1G59590 Arabidopsis lyrata HOM05D000169 ORTHO05D001214 2.4e-07 58.5 51 56.9
AT1G51680 Arabidopsis thaliana HOM05D000169 ORTHO05D001214 2.4e-07 58.5 51 56.9
AUR62033205 Chenopodium quinoa HOM05D000169 ORTHO05D001214 2.4e-07 58.5 51 51.0
AUR62040310 Chenopodium quinoa HOM05D000169 ORTHO05D001214 2.4e-07 58.5 51 51.0
AUR62044152 Chenopodium quinoa HOM05D000169 ORTHO05D001214 2.4e-07 58.5 51 51.0
Thhalv10011357m.g Eutrema salsugineum HOM05D000169 ORTHO05D001214 2.4e-07 58.5 51 56.9
Gohir.A10G049500 Gossypium hirsutum HOM05D000169 ORTHO05D001214 2.4e-07 58.5 51 54.9
Manes.04G095300 Manihot esculenta HOM05D000169 ORTHO05D001214 2.4e-07 58.5 51 52.9
Sp1g38320 Schrenkiella parvula HOM05D000169 ORTHO05D001214 2.4e-07 58.5 51 56.9
Carub.0001s4055 Capsella rubella HOM05D000169 ORTHO05D001214 3.1e-07 58.2 51 56.9
Gohir.D10G050200 Gossypium hirsutum HOM05D000169 ORTHO05D001214 3.1e-07 58.2 51 54.9
Gorai.011G053700 Gossypium raimondii HOM05D000169 ORTHO05D001214 3.1e-07 58.2 51 54.9
BcaB02g11270 Brassica carinata HOM05D000169 ORTHO05D001214 5.3e-07 57.4 51 54.9
BcaC08g43929 Brassica carinata HOM05D000169 ORTHO05D001214 5.3e-07 57.4 51 54.9
C06p13210 Brassica napus HOM05D000169 ORTHO05D001214 5.3e-07 57.4 51 54.9
BolC6t36477H Brassica oleracea HOM05D000169 ORTHO05D001214 5.3e-07 57.4 51 54.9
Psat4g011560 Pisum sativum HOM05D000169 ORTHO05D001214 5.3e-07 57.4 44 63.6
Peaxi162Scf00610g00346 Petunia axillaris HOM05D000169 ORTHO05D001214 6.9e-07 57.0 67 44.8
Sabra03G0137800 Salix brachista HOM05D000169 ORTHO05D001214 6.9e-07 57.0 46 60.9
Aqoxy4G01853 Aquilegia oxysepala HOM05D000169 ORTHO05D001214 9.1e-07 56.6 51 52.9
Ca_21214_v3 Cicer arietinum L. HOM05D000169 ORTHO05D001214 9.1e-07 56.6 44 61.4
Dinv42733 Davidia involucrata HOM05D000169 ORTHO05D001214 9.1e-07 56.6 51 52.9
Dinv43368 Davidia involucrata HOM05D000169 ORTHO05D001214 9.1e-07 56.6 51 52.9
Potri.003G188500 Populus trichocarpa HOM05D000169 ORTHO05D001214 9.1e-07 56.6 46 58.7
A05p19450 Brassica napus HOM05D000169 ORTHO05D001214 1.2e-06 56.2 51 52.9
BraA05t20849Z Brassica rapa HOM05D000169 ORTHO05D001214 1.2e-06 56.2 51 52.9
COL.COLO4_30889 Corchorus olitorius HOM05D000169 ORTHO05D001214 1.2e-06 56.2 51 51.0
Ciclev10007733m.g Citrus clementina HOM05D000169 ORTHO05D001214 1.5e-06 55.8 51 54.9
Psat2g064680 Pisum sativum HOM05D000169 ORTHO05D001214 1.5e-06 55.8 44 59.1
TAR636G1179 Trochodendron aralioides HOM05D000169 ORTHO05D001214 1.5e-06 55.8 51 52.9
Cpa.g.sc2471.2 Carica papaya HOM05D000169 ORTHO05D001214 2.0e-06 55.5 51 52.9
Ciclev10025280m.g Citrus clementina HOM05D000169 ORTHO05D001214 2.0e-06 55.5 51 52.9
Dinv41256 Davidia involucrata HOM05D000169 ORTHO05D001214 2.0e-06 55.5 51 51.0
Sopen07g004250 Solanum pennellii HOM05D000169 ORTHO05D001214 2.0e-06 55.5 45 55.6
CARHR097140 Cardamine hirsuta HOM05D000169 ORTHO05D001214 2.6e-06 55.1 51 56.9
Cpa.g.sc95.61 Carica papaya HOM05D000169 ORTHO05D001214 2.6e-06 55.1 51 54.9
Cc06_g13370 Coffea canephora HOM05D000169 ORTHO05D001214 2.6e-06 55.1 51 51.0
Nitab4.5_0007650g0030 Nicotiana tabacum HOM05D000169 ORTHO05D001214 2.6e-06 55.1 45 55.6
Psat0s2935g0040 Pisum sativum HOM05D000169 ORTHO05D000265 2.6e-06 55.1 44 59.1
TPR.G5424 Trifolium pratense HOM05D000169 ORTHO05D001214 2.6e-06 55.1 43 60.5
CAN.G1495.1 Capsicum annuum HOM05D000169 ORTHO05D001214 3.4e-06 54.7 51 51.0
ClCG10G012790 Citrullus lanatus HOM05D000169 ORTHO05D001214 3.4e-06 54.7 51 45.1
Haze_15185 Corylus avellana HOM05D000169 ORTHO05D001214 3.4e-06 54.7 51 51.0
Gohir.D05G006000 Gossypium hirsutum HOM05D000169 ORTHO05D001214 3.4e-06 54.7 51 51.0
Gorai.009G005900 Gossypium raimondii HOM05D000169 ORTHO05D001214 3.4e-06 54.7 51 51.0
Potri.001G036900 Populus trichocarpa HOM05D000169 ORTHO05D001214 3.4e-06 54.7 46 54.3
Solyc07g008360.2 Solanum lycopersicum HOM05D000169 ORTHO05D001214 3.4e-06 54.7 51 51.0
PGSC0003DMG401019891 Solanum tuberosum HOM05D000169 ORTHO05D001214 3.4e-06 54.7 51 51.0
AagrBONN_evm.TU.Sc2ySwM_362.900 Anthoceros agrestis HOM05D000169 ORTHO05D001214 4.5e-06 54.3 51 49.0
A05p27480 Brassica napus HOM05D000125 ORTHO05D000120 4.5e-06 54.3 36 77.8
CiPaw.02G024000 Carya illinoinensis HOM05D000169 ORTHO05D001214 4.5e-06 54.3 51 51.0
COL.COLO4_28288 Corchorus olitorius HOM05D000169 ORTHO05D001214 4.5e-06 54.3 51 51.0
Gohir.A05G005100 Gossypium hirsutum HOM05D000169 ORTHO05D001214 4.5e-06 54.3 51 49.0
Lj4g0008313 Lotus japonicus HOM05D000169 ORTHO05D001214 4.5e-06 54.3 43 58.1
Nitab4.5_0000957g0180 Nicotiana tabacum HOM05D000169 ORTHO05D001214 4.5e-06 54.3 51 51.0
Phvul.003G146900 Phaseolus vulgaris HOM05D000169 ORTHO05D001214 4.5e-06 54.3 45 48.9
Rhsim01G0006200 Rhododendron simsii HOM05D000169 ORTHO05D001214 4.5e-06 54.3 51 49.0
Sabra01G0025600 Salix brachista HOM05D000169 ORTHO05D001214 4.5e-06 54.3 46 54.3
TWI74G1219 Tripterygium wilfordii HOM05D000169 ORTHO05D001214 4.5e-06 54.3 51 51.0
GSVIVG01029182001 Vitis vinifera HOM05D000169 ORTHO05D001214 4.5e-06 54.3 45 55.6
Atru.chr7.672 Acer truncatum HOM05D000169 ORTHO05D001214 5.9e-06 53.9 51 51.0
MSTRG.6208 Avicennia marina HOM05D000169 ORTHO05D000265 5.9e-06 53.9 46 56.5
CsaV3_7G031600 Cucumis sativus L. HOM05D000169 ORTHO05D001214 5.9e-06 53.9 46 47.8
Duzib150G0098 Durio zibethinus HOM05D000169 ORTHO05D001214 5.9e-06 53.9 45 53.3
Eucgr.C02284 Eucalyptus grandis HOM05D000169 ORTHO05D001214 5.9e-06 53.9 51 47.1
Medtr4g128337 Medicago truncatula HOM05D000169 ORTHO05D001214 5.9e-06 53.9 43 60.5
TWI34G1511 Tripterygium wilfordii HOM05D000169 ORTHO05D001214 5.9e-06 53.9 51 49.0
Actinidia17125 Actinidia chinensis HOM05D000169 ORTHO05D001214 7.7e-06 53.5 51 45.1
Actinidia29989 Actinidia chinensis HOM05D000169 ORTHO05D001214 7.7e-06 53.5 51 45.1
CANSAT21G2146 Cannabis sativa HOM05D000169 ORTHO05D001214 7.7e-06 53.5 46 50.0
ClCG06G013250 Citrullus lanatus HOM05D000169 ORTHO05D001214 7.7e-06 53.5 67 40.3
MELO3C024886.2 Cucumis melo HOM05D000169 ORTHO05D001214 7.7e-06 53.5 51 47.1
Glyma.17G064600 Glycine max HOM05D000169 ORTHO05D001214 7.7e-06 53.5 43 58.1
Phvul.003G147000 Phaseolus vulgaris HOM05D000169 ORTHO05D001214 7.7e-06 53.5 43 58.1


User provided reference genes

Program Settings