Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g28104 Brassica carinata HOM05D007657 ORTHO05D009471 6.6e-165 583.9 290 100.0
C05p41310 Brassica napus HOM05D007657 ORTHO05D009471 6.6e-165 583.9 290 100.0
BolC5t32872H Brassica oleracea HOM05D007657 ORTHO05D009471 6.6e-165 583.9 290 100.0
A05p26740 Brassica napus HOM05D007657 ORTHO05D009471 4.2e-127 458.4 292 84.9
BraA05t21556Z Brassica rapa HOM05D007657 ORTHO05D009471 5.4e-127 458.0 292 84.9
BcaB06g26306 Brassica carinata HOM05D007657 ORTHO05D009471 2.4e-114 416.0 290 78.3
Sp3g19920 Schrenkiella parvula HOM05D007657 ORTHO05D009471 9.7e-100 367.5 311 67.8
BcaB04g20544 Brassica carinata HOM05D007657 ORTHO05D009471 5.7e-76 288.5 332 53.9
Thhalv10021235m.g Eutrema salsugineum HOM05D007657 ORTHO05D009471 2.9e-72 276.2 314 57.6
Aa31LG8G8650 Aethionema arabicum HOM05D007657 ORTHO05D009471 2.7e-57 226.5 311 49.8
Carub.0003s2227 Capsella rubella HOM05D007657 ORTHO05D009471 1.1e-55 221.1 308 49.4
AT3G22100 Arabidopsis thaliana HOM05D007657 ORTHO05D009471 5.7e-52 208.8 285 48.8
AL3G36280 Arabidopsis lyrata HOM05D007657 ORTHO05D009471 3.0e-48 196.4 272 48.2
THA.LOC104802534 Tarenaya hassleriana HOM05D007657 ORTHO05D009471 7.8e-41 171.8 314 41.1
Duzib052G0340 Durio zibethinus HOM05D007657 ORTHO05D009471 1.0e-24 118.2 246 37.0
Thecc.02G164200 Theobroma cacao HOM05D007657 ORTHO05D009471 1.1e-23 114.8 217 37.3
TWI18G0648 Tripterygium wilfordii HOM05D007657 ORTHO05D009471 2.1e-22 110.5 213 37.1
Hma1.2p1_2477F.1_g322870 Hydrangea macrophylla HOM05D007657 ORTHO05D009471 4.7e-22 109.4 155 43.2
Nn1g03743 Nelumbo nucifera HOM05D020747 ORTHO05D009471 3.1e-21 106.7 140 42.1
Rhsim04G0057500 Rhododendron simsii HOM05D007657 ORTHO05D009471 5.2e-21 105.9 141 40.4
MBI18_g21102_MAGBIO Magnolia biondii HOM05D007657 ORTHO05D009471 1.2e-20 104.8 116 50.0
MBI18_g45174_MAGBIO Magnolia biondii HOM05D007657 ORTHO05D009471 1.2e-20 104.8 116 50.0
Duzib248G0741 Durio zibethinus HOM05D007657 ORTHO05D009471 2.6e-20 103.6 254 33.1
Cfa014460 Carpinus fangiana HOM05D007657 ORTHO05D009471 4.4e-20 102.8 199 36.7
Dinv18547 Davidia involucrata HOM05D007657 ORTHO05D009471 7.6e-20 102.1 111 47.7
COL.COLO4_13025 Corchorus olitorius HOM05D007657 ORTHO05D009471 1.3e-19 101.3 211 35.1
Atru.chr6.3119 Acer truncatum HOM05D007657 ORTHO05D009471 1.7e-19 100.9 124 44.4
Cpa.g.sc8.253 Carica papaya HOM05D007657 ORTHO05D009471 1.7e-19 100.9 283 30.0
Gohir.A03G163000 Gossypium hirsutum HOM05D007657 ORTHO05D009471 1.7e-19 100.9 225 36.4
Oeu034340.1 Olea europaea HOM05D007657 ORTHO05D009471 1.7e-19 100.9 263 30.4
CAN.G86.24 Capsicum annuum HOM05D007657 ORTHO05D009471 2.2e-19 100.5 138 42.0
QL08p034229 Quercus lobata HOM05D007657 ORTHO05D009471 2.2e-19 100.5 227 33.0
Gohir.D02G186500 Gossypium hirsutum HOM05D007657 ORTHO05D009471 3.8e-19 99.8 226 35.4
CiPaw.03G164200 Carya illinoinensis HOM05D007657 ORTHO05D009471 2.4e-18 97.1 221 32.6
ClCG02G001620 Citrullus lanatus HOM05D007657 ORTHO05D009471 5.4e-18 95.9 211 32.7
Lsat_1_v5_gn_3_43060 Lactuca sativa HOM05D007657 ORTHO05D009471 5.4e-18 95.9 200 33.0
MBI18_g21101_MAGBIO Magnolia biondii HOM05D007657 ORTHO05D009471 5.4e-18 95.9 116 48.3
Gorai.005G208700 Gossypium raimondii HOM05D007657 ORTHO05D009471 1.6e-17 94.4 227 35.2
Peaxi162Scf00007g01411 Petunia axillaris HOM05D007657 ORTHO05D009471 3.5e-17 93.2 116 42.2
Phvul.005G112100 Phaseolus vulgaris HOM05D007657 ORTHO05D009471 3.5e-17 93.2 111 42.3
Sed0004603 Sechium edule HOM05D007657 ORTHO05D009471 3.5e-17 93.2 190 32.6
Prupe.3G222500 Prunus persica HOM05D007657 ORTHO05D009471 6.0e-17 92.4 254 31.1
Solyc07g052930.3 Solanum lycopersicum HOM05D007657 ORTHO05D009471 6.0e-17 92.4 206 35.0
Sopen07g026480 Solanum pennellii HOM05D007657 ORTHO05D009471 7.8e-17 92.0 206 35.0
MELO3C018792.2 Cucumis melo HOM05D007657 ORTHO05D009471 1.3e-16 91.3 199 34.7
MD17G1091100 Malus domestica HOM05D007657 ORTHO05D009471 1.3e-16 91.3 120 41.7
PGSC0003DMG400026164 Solanum tuberosum HOM05D007657 ORTHO05D009471 1.7e-16 90.9 206 34.0
SGA_v2.0_scaffold159G37602 Striga asiatica HOM05D007657 ORTHO05D009471 2.3e-16 90.5 114 39.5
VMungo1080G1905 Vigna mungo HOM05D007657 ORTHO05D009471 3.0e-16 90.1 111 43.2
ATR0804G080 Amborella trichopoda HOM05D007657 ORTHO05D009471 6.6e-16 89.0 122 45.9
CsaV3_7G003870 Cucumis sativus L. HOM05D007657 ORTHO05D009471 6.6e-16 89.0 198 33.8
FAN02G3547 Fragaria x ananassa HOM05D007657 ORTHO05D009471 6.6e-16 89.0 190 33.7
CANSAT64G1489 Cannabis sativa HOM05D007657 ORTHO05D009471 8.7e-16 88.6 110 43.6
Nitab4.5_0003429g0020 Nicotiana tabacum HOM05D007657 ORTHO05D009471 8.7e-16 88.6 152 35.5
FAN09G3022 Fragaria x ananassa HOM05D007657 ORTHO05D009471 1.5e-15 87.8 190 33.2
Lj3g0008282 Lotus japonicus HOM05D007657 ORTHO05D009471 1.5e-15 87.8 111 39.6
Glyma.12G196900 Glycine max HOM05D007657 ORTHO05D009471 1.9e-15 87.4 122 40.2
arahy.Tifrunner.gnm1.ann1.X70W6B Arachis hypogaea HOM05D007657 ORTHO05D009471 2.5e-15 87.0 185 35.1
HanXRQChr15g0479591 Helianthus annuus HOM05D007657 ORTHO05D009471 2.5e-15 87.0 204 33.3
Psat0s3329g0040 Pisum sativum HOM05D007657 ORTHO05D009471 2.5e-15 87.0 129 41.1
HPP92_000868 Vanilla planifolia HOM05D007657 ORTHO05D009471 2.5e-15 87.0 202 33.2
Cc05_g05320 Coffea canephora HOM05D007657 ORTHO05D009471 3.3e-15 86.7 127 38.6
CDE05G1372 Ceratophyllum demersum HOM05D007657 ORTHO05D009471 5.6e-15 85.9 111 42.3
RcHm_v2.0_Chr2g0160481 Rosa chinensis HOM05D007657 ORTHO05D009471 9.6e-15 85.1 119 42.9
Ca_01565_v3 Cicer arietinum L. HOM05D007657 ORTHO05D009471 1.3e-14 84.7 135 38.5
Sc12g0002470 Simmondsia chinensis HOM05D007657 ORTHO05D009471 2.1e-14 84.0 181 33.1
FAN05G3329 Fragaria x ananassa HOM05D007657 ORTHO05D009471 2.8e-14 83.6 116 42.2
SalBow1G6397 Salvia bowleyana HOM05D007657 ORTHO05D009471 3.6e-14 83.2 110 41.8
FvH4_6g43750 Fragaria vesca HOM05D007657 ORTHO05D009471 6.2e-14 82.4 191 33.5
FAN14G5828 Fragaria x ananassa HOM05D007657 ORTHO05D009471 6.2e-14 82.4 191 33.5
Lalb_Chr14g0375601 Lupinus albus HOM05D007657 ORTHO05D009471 6.2e-14 82.4 103 42.7
TPR.G30798 Trifolium pratense HOM05D007657 ORTHO05D009471 8.1e-14 82.0 115 42.6
Medtr2g089070 Medicago truncatula HOM05D007657 ORTHO05D009471 1.8e-13 80.9 281 27.8
Nn1g02822 Nelumbo nucifera HOM05D020747 ORTHO05D009471 6.9e-13 79.0 121 37.2
Nn012s41456 Nelumbo nucifera HOM05D020747 ORTHO05D009471 1.2e-12 78.2 119 37.0
unitig_62.g23194 Utricularia gibba HOM05D007657 ORTHO05D009471 1.5e-12 77.8 106 41.5
SGA_v2.0_scaffold4400G54479 Striga asiatica HOM05D007657 ORTHO05D009471 7.6e-12 75.5 157 36.3
Aqoxy7G03995 Aquilegia oxysepala HOM05D007657 ORTHO05D009471 1.7e-11 74.3 118 36.4
Cfa019641 Carpinus fangiana HOM05D007657 ORTHO05D009471 2.1e-09 67.4 108 35.2
Cfa021139 Carpinus fangiana HOM05D007657 ORTHO05D009471 4.6e-09 66.2 108 34.3
Psat7g073040 Pisum sativum HOM05D007657 ORTHO05D009471 1.3e-08 64.7 81 43.2
Actinidia30501 Actinidia chinensis HOM05D007657 ORTHO05D009471 2.3e-08 63.9 79 41.8
Migut.H01205 Erythranthe guttata HOM05D007657 ORTHO05D009471 2.5e-07 60.5 83 41.0
ATR0772G185 Amborella trichopoda HOM05D007657 ORTHO05D009471 5.6e-07 59.3 76 46.1
Nitab4.5_0001134g0150 Nicotiana tabacum HOM05D007657 ORTHO05D009471 5.6e-07 59.3 107 33.6
FvH4_1g29760 Fragaria vesca HOM05D007657 ORTHO05D009471 9.6e-07 58.5 56 44.6
FAN19G0836 Fragaria x ananassa HOM05D007657 ORTHO05D009471 9.6e-07 58.5 56 44.6


User provided reference genes

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