Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 3.0e-168 595.1 307 100.0
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 1.1e-159 566.6 294 100.0
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 1.3e-139 500.0 259 100.0
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 4.6e-132 474.9 273 92.7
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 5.2e-128 461.5 261 92.3
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.2e-127 460.3 265 90.6
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.1e-125 453.8 266 89.1
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 1.9e-125 453.0 264 89.0
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 4.6e-124 448.4 268 88.8
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 5.0e-123 444.9 291 83.2
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 6.6e-123 444.5 266 87.6
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 1.6e-121 439.9 273 85.7
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 4.7e-121 438.3 296 81.8
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 1.8e-120 436.4 267 87.3
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 9.2e-117 424.1 264 85.6
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 2.1e-113 412.9 270 83.0
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 2.1e-113 412.9 261 83.5
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 4.7e-113 411.8 272 81.6
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.7e-110 402.1 262 81.3
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 8.4e-110 401.0 265 80.8
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 2.1e-108 396.4 268 80.6
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 1.1e-106 390.6 272 76.8
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 6.2e-105 384.8 266 78.9
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 2.4e-104 382.9 271 77.9
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 2.0e-103 379.8 263 77.6
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 2.1e-97 359.8 238 79.4
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 6.2e-97 358.2 238 79.0
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 1.8e-96 356.7 219 81.3
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 2.4e-96 356.3 252 73.8
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 3.1e-96 355.9 261 70.1
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 6.9e-96 354.8 238 78.2
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 6.9e-96 354.8 226 78.3
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 2.0e-95 353.2 213 82.2
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 2.6e-95 352.8 213 81.7
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.6e-95 352.8 233 77.7
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 2.6e-95 352.8 196 87.8
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 4.5e-95 352.1 213 81.2
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 5.8e-95 351.7 248 73.8
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 7.6e-95 351.3 220 79.5
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 9.9e-95 350.9 265 71.3
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 9.9e-95 350.9 212 83.0
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 9.9e-95 350.9 220 79.5
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 9.9e-95 350.9 262 70.2
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 9.9e-95 350.9 200 85.5
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 9.9e-95 350.9 213 82.2
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 1.3e-94 350.5 216 80.6
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 1.7e-94 350.1 188 88.3
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.7e-94 350.1 240 76.2
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 2.2e-94 349.7 278 66.5
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 2.9e-94 349.4 215 81.9
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 2.9e-94 349.4 271 68.3
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 2.9e-94 349.4 271 67.9
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 3.8e-94 349.0 210 82.9
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 4.9e-94 348.6 213 81.2
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.4e-94 348.2 276 69.2
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.4e-94 348.2 190 87.4
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 8.4e-94 347.8 231 77.5
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 1.4e-93 347.1 266 69.5
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 1.9e-93 346.7 216 80.6
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 1.9e-93 346.7 239 73.2
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.4e-93 346.3 220 78.6
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 4.2e-93 345.5 208 81.7
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 4.2e-93 345.5 269 70.3
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 4.2e-93 345.5 276 67.4
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 5.4e-93 345.1 222 78.8
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 5.4e-93 345.1 228 78.1
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 7.1e-93 344.7 237 74.7
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 7.1e-93 344.7 245 73.1
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 9.3e-93 344.4 239 72.4
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 9.3e-93 344.4 199 83.9
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.6e-92 343.6 215 79.1
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 2.1e-92 343.2 218 76.6
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.7e-92 342.8 202 83.2
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 2.7e-92 342.8 273 67.0
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 2.7e-92 342.8 214 80.4
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 4.6e-92 342.0 238 76.1
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 4.6e-92 342.0 199 83.4
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 6.0e-92 341.7 211 81.0
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 6.0e-92 341.7 220 77.7
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 7.9e-92 341.3 279 66.3
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 7.9e-92 341.3 263 70.3
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.3e-91 340.5 247 70.4
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 2.3e-91 339.7 213 79.3
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 3.0e-91 339.3 301 61.5
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 3.0e-91 339.3 225 77.8
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 5.1e-91 338.6 282 64.9
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 5.1e-91 338.6 264 69.7
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 6.6e-91 338.2 272 66.5
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 1.1e-90 337.4 208 82.2
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 1.9e-90 336.7 250 70.4
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 2.5e-90 336.3 278 65.8
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 2.5e-90 336.3 210 81.9
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 3.3e-90 335.9 242 70.7
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 7.4e-90 334.7 241 74.3
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 7.4e-90 334.7 273 66.7
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 7.4e-90 334.7 212 78.3
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 9.6e-90 334.3 265 69.4
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 1.3e-89 334.0 207 78.7
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 2.1e-89 333.2 200 81.5
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 2.8e-89 332.8 270 67.4
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 2.8e-89 332.8 241 71.4
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 1.1e-88 330.9 223 75.3
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 1.4e-88 330.5 228 75.9
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 1.8e-88 330.1 216 75.9
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 1.8e-88 330.1 215 76.3
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 4.0e-88 328.9 242 69.8
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 9.9e-87 324.3 221 74.7
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 1.7e-86 323.6 273 66.7
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 2.9e-86 322.8 214 74.3
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 3.8e-86 322.4 261 68.2
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 4.9e-86 322.0 188 81.4
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 6.4e-86 321.6 220 72.7
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.2e-85 319.3 324 56.5
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 6.0e-84 315.1 216 75.0
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 5.1e-83 312.0 238 67.2
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 1.4e-80 303.9 188 77.7
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 1.5e-79 300.4 264 63.6
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 2.6e-79 299.7 257 65.0
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 4.5e-79 298.9 190 77.9
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 1.3e-78 297.4 265 65.3
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 4.9e-78 295.4 196 74.5
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.9e-78 295.4 217 68.7
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 4.2e-77 292.4 262 63.4
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 6.0e-76 288.5 156 87.2
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 3.7e-73 279.3 238 60.5
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 1.1e-72 277.7 156 85.3
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 1.8e-72 276.9 153 85.0
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 5.3e-72 275.4 208 69.2
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.8e-70 269.2 231 62.8
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 5.0e-70 268.9 161 80.7
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 1.1e-69 267.7 191 69.6
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 1.2e-68 264.2 207 63.8
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 1.6e-68 263.8 227 60.4
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.3e-67 260.0 152 83.6
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 2.3e-67 260.0 150 80.0
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 4.3e-66 255.8 149 84.6
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 9.7e-66 254.6 284 54.2
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.6e-65 253.8 151 78.8
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 6.9e-64 248.4 207 64.3
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 1.7e-62 243.8 179 70.9
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 1.7e-62 243.8 191 64.9
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 5.0e-62 242.3 215 62.3
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 2.5e-61 240.0 234 57.3
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 5.5e-61 238.8 228 58.3
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 8.2e-57 224.9 134 76.9
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 4.2e-53 212.6 222 56.8
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 4.2e-53 212.6 254 42.9
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 1.2e-52 211.1 157 69.4
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 2.7e-52 209.9 180 66.7
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 2.6e-47 193.4 182 59.9
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 1.9e-45 187.2 352 39.8
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 4.2e-45 186.0 142 66.9
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 1.0e-38 164.9 192 51.0
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 8.8e-35 151.8 180 41.7
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 7.0e-32 142.1 192 37.5
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.6e-31 141.0 203 39.4
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 7.2e-29 132.1 84 77.4
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 4.7e-20 102.8 62 75.8
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 2.3e-19 100.5 62 74.2
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 2.9e-17 93.6 100 58.0
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 6.4e-17 92.4 59 74.6
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.6e-12 77.8 41 90.2
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 6.2e-12 75.9 48 83.3
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.0e-10 70.9 36 86.1
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 3.4e-10 70.1 68 58.8
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.4e-10 69.7 36 83.3
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 7.5e-10 68.9 39 84.6
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 2.2e-09 67.4 118 36.4
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 5.4e-08 62.8 32 87.5
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.7e-07 60.5 42 64.3
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.7e-06 57.8 34 73.5
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 1.7e-06 57.8 109 36.7


User provided reference genes

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