Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 8.0e-134 480.7 295 100.0
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 6.7e-133 477.6 295 99.7
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 9.1e-130 467.2 295 89.5
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 3.8e-128 461.8 295 88.8
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 6.5e-128 461.1 295 88.8
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 8.3e-123 444.1 297 87.5
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 1.4e-122 443.4 297 87.2
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 5.0e-120 434.9 298 87.9
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 5.0e-120 434.9 298 87.9
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 5.0e-120 434.9 298 87.9
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 2.0e-116 422.9 295 81.0
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 5.4e-114 414.8 301 83.4
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 2.3e-112 409.5 298 82.2
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 1.1e-111 407.1 299 81.3
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 1.2e-110 403.7 297 87.2
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 1.0e-109 400.6 295 73.6
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 2.3e-109 399.4 302 79.8
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 5.2e-109 398.3 296 75.3
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 2.6e-108 396.0 304 80.3
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 5.8e-108 394.8 304 78.9
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 4.9e-107 391.7 295 73.9
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 7.8e-105 384.4 295 71.9
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 1.6e-102 376.7 297 77.1
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 3.6e-102 375.6 298 71.1
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.3e-96 357.1 296 68.2
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 3.5e-73 279.3 295 58.0
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 1.5e-71 273.9 294 55.8
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 7.3e-71 271.6 294 55.4
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.3e-70 270.8 289 69.2
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 1.6e-70 270.4 296 54.7
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 1.6e-70 270.4 292 67.8
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.6e-70 270.4 288 69.4
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 8.1e-70 268.1 298 67.8
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 1.8e-69 266.9 289 60.6
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 2.4e-69 266.5 297 61.6
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 5.3e-69 265.4 301 60.5
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 6.9e-69 265.0 259 71.8
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 6.9e-69 265.0 291 67.7
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 1.2e-68 264.2 296 67.2
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 1.5e-68 263.8 298 53.4
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 2.0e-68 263.5 297 66.0
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 2.0e-68 263.5 292 61.3
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 2.6e-68 263.1 301 53.5
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 3.4e-68 262.7 289 62.3
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 3.4e-68 262.7 295 60.7
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 5.8e-68 261.9 301 59.5
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 5.8e-68 261.9 291 64.9
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 7.6e-68 261.5 290 54.8
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 9.9e-68 261.2 298 55.4
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 1.7e-67 260.4 273 60.1
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 2.2e-67 260.0 297 65.7
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 2.9e-67 259.6 287 62.4
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 1.1e-66 257.7 258 70.9
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 1.4e-66 257.3 281 54.4
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 1.4e-66 257.3 259 56.0
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 1.4e-66 257.3 304 60.2
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.4e-66 256.5 307 57.0
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 3.2e-66 256.1 256 63.7
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 5.4e-66 255.4 294 54.1
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 5.4e-66 255.4 294 54.8
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 7.1e-66 255.0 294 54.4
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.2e-65 254.2 300 60.0
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.6e-65 253.8 268 61.2
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 1.6e-65 253.8 300 62.3
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 2.7e-65 253.1 285 53.3
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 2.7e-65 253.1 295 53.2
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 3.5e-65 252.7 283 67.1
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 3.5e-65 252.7 300 62.0
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 3.5e-65 252.7 290 58.6
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 3.5e-65 252.7 299 53.5
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 4.6e-65 252.3 304 60.9
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 4.6e-65 252.3 298 52.0
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 7.9e-65 251.5 298 54.4
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 7.9e-65 251.5 298 54.4
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 7.9e-65 251.5 297 55.2
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 1.3e-64 250.8 289 58.1
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 2.3e-64 250.0 299 58.2
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 2.3e-64 250.0 301 53.8
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.1e-64 248.8 242 66.1
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.7e-64 248.4 241 65.6
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 8.7e-64 248.1 193 91.2
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 8.7e-64 248.1 256 60.5
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 1.1e-63 247.7 256 64.1
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.1e-63 247.7 241 66.0
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.1e-63 247.7 241 66.0
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 1.5e-63 247.3 308 51.6
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.9e-63 246.9 241 66.0
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.3e-63 245.7 256 62.9
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 9.6e-63 244.6 298 60.4
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 2.8e-62 243.0 290 55.2
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 3.7e-62 242.7 263 59.3
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 4.8e-62 242.3 299 49.8
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 6.2e-62 241.9 262 56.1
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 8.1e-62 241.5 284 53.2
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 3.1e-61 239.6 293 49.8
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 6.9e-61 238.4 248 54.4
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 1.5e-60 237.3 285 58.6
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 2.0e-60 236.9 282 52.5
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 2.6e-60 236.5 304 50.7
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 5.8e-60 235.3 264 57.6
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 5.8e-60 235.3 286 63.3
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 7.6e-60 235.0 278 54.7
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 1.1e-58 231.1 292 53.4
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 1.9e-58 230.3 263 55.9
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 2.5e-58 229.9 288 64.2
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 7.1e-58 228.4 298 49.3
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 7.1e-58 228.4 283 50.2
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.2e-57 227.6 283 50.5
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 2.7e-57 226.5 298 59.4
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 1.3e-56 224.2 307 54.1
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 1.8e-56 223.8 293 57.3
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 6.7e-56 221.9 300 48.7
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 1.1e-55 221.1 263 51.3
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 9.6e-55 218.0 292 47.6
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.6e-54 217.2 282 50.0
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 6.2e-54 215.3 233 54.9
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 6.2e-54 215.3 285 48.4
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.4e-53 214.2 291 62.2
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 2.4e-53 213.4 277 54.2
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 3.1e-53 213.0 271 59.8
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 4.0e-53 212.6 241 56.8
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 9.0e-53 211.5 303 52.1
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 9.0e-53 211.5 249 51.4
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 1.5e-52 210.7 282 48.6
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.6e-52 209.9 299 52.2
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 8.4e-51 204.9 293 52.2
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.1e-49 200.3 278 48.9
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.0e-48 196.4 283 52.3
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 5.1e-48 195.7 250 56.4
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.7e-47 192.2 213 61.5
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 2.2e-46 190.3 262 49.2
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 6.3e-46 188.7 278 46.4
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 7.7e-44 181.8 296 41.9
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 1.7e-43 180.6 209 55.5
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 1.2e-41 174.5 256 43.4
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 4.6e-41 172.6 249 55.8
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 7.9e-41 171.8 268 41.8
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 6.7e-40 168.7 201 57.2
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 7.7e-36 155.2 170 66.5
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 3.8e-35 152.9 137 57.7
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.8e-35 152.9 277 39.0
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 8.5e-35 151.8 134 56.7
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 1.1e-34 151.4 276 38.4
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.2e-34 149.8 182 72.5
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 9.4e-34 148.3 192 56.8
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 2.1e-33 147.1 297 49.2
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 7.9e-33 145.2 283 45.6
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 1.1e-29 134.8 136 54.4
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.1e-29 134.8 132 54.5
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 2.2e-27 127.1 116 56.9
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 1.5e-26 124.4 285 34.4
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 8.0e-25 118.6 277 36.1
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 1.4e-24 117.9 248 33.5
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 1.8e-24 117.5 262 37.8
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 3.9e-24 116.3 292 36.0
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 4.8e-22 109.4 189 56.6
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 1.1e-21 108.2 242 36.8
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.8e-21 107.5 105 60.0
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.8e-21 107.5 105 60.0
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 4.5e-20 102.8 288 31.6
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 3.8e-19 99.8 207 34.8
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.1e-18 98.2 123 48.8
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 4.2e-18 96.3 118 53.4
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 2.1e-17 94.0 197 37.1
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.4e-16 91.3 111 46.8
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.3e-16 90.5 65 66.2
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 2.4e-13 80.5 67 58.2
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 4.1e-13 79.7 55 70.9
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.0e-11 75.1 63 68.3
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 2.2e-11 73.9 111 49.5
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 6.5e-11 72.4 82 58.5
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 1.2e-09 68.2 242 28.5
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 1.4e-08 64.7 53 62.3
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 5.2e-08 62.8 99 46.5
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 1.5e-07 61.2 59 66.1
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.6e-07 60.5 96 46.9
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 1.3e-06 58.2 36 72.2
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 2.8e-06 57.0 265 27.2


User provided reference genes

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