Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 5.6e-190 667.5 357 100.0
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 1.6e-184 649.4 357 98.0
BolSC83t61262H Brassica oleracea HOM05D006505 ORTHO05D008086 1.3e-101 374.0 215 97.7
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 3.5e-67 259.6 283 57.6
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 3.5e-67 259.6 283 57.6
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 9.5e-65 251.5 282 62.4
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 2.1e-64 250.4 284 55.6
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 2.1e-59 233.8 276 54.0
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 2.1e-59 233.8 276 54.0
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 2.3e-58 230.3 243 66.7
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 3.6e-56 223.0 284 51.4
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.1e-52 211.5 292 49.0
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 1.3e-50 204.5 293 50.2
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 1.9e-49 200.7 292 47.3
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 2.5e-49 200.3 289 47.8
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 6.2e-48 195.7 293 45.7
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 3.8e-45 186.4 283 45.2
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.3e-37 161.4 104 76.0
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 2.2e-37 160.6 116 75.0
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 6.4e-37 159.1 104 76.9
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 6.4e-37 159.1 104 74.0
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 1.5e-33 147.9 104 67.3
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 2.8e-32 143.7 104 64.4
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 6.2e-32 142.5 104 62.5
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 6.2e-32 142.5 104 67.3
BraA05t21433Z Brassica rapa HOM05D006505 ORTHO05D008086 8.1e-32 142.1 196 48.0
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 1.1e-31 141.7 104 65.4
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 1.1e-31 141.7 104 62.5
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 1.1e-31 141.7 104 68.3
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 1.4e-31 141.4 104 66.3
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 1.4e-31 141.4 104 62.5
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 3.1e-31 140.2 104 62.5
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 4.0e-31 139.8 104 68.3
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 5.3e-31 139.4 105 63.8
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 9.0e-31 138.7 104 61.5
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 9.0e-31 138.7 104 62.5
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 9.0e-31 138.7 104 62.5
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.2e-30 138.3 104 66.3
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.2e-30 138.3 104 66.3
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 1.2e-30 138.3 104 62.5
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 1.2e-30 138.3 104 61.5
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 1.5e-30 137.9 104 59.6
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.4e-30 136.7 104 65.4
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.4e-30 136.7 104 65.4
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 3.4e-30 136.7 105 61.9
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 5.8e-30 136.0 104 62.5
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 9.9e-30 135.2 105 61.0
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 9.9e-30 135.2 104 64.4
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 1.3e-29 134.8 104 64.4
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.7e-29 134.4 104 64.4
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.7e-29 134.4 105 62.9
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 2.2e-29 134.0 104 64.4
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 2.2e-29 134.0 104 64.4
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 2.2e-29 134.0 105 63.8
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 2.9e-29 133.7 104 60.6
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 3.8e-29 133.3 104 60.6
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 4.9e-29 132.9 104 62.5
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 4.9e-29 132.9 105 61.9
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 1.1e-28 131.7 104 59.6
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 1.1e-28 131.7 104 59.6
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 1.4e-28 131.3 104 63.5
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.9e-28 131.0 104 59.6
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 2.4e-28 130.6 104 58.7
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 2.4e-28 130.6 104 64.4
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 5.5e-28 129.4 104 59.6
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 5.5e-28 129.4 103 60.2
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 7.1e-28 129.0 104 60.6
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 9.3e-28 128.6 105 60.0
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 9.3e-28 128.6 105 61.9
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.2e-27 128.3 103 59.2
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 1.6e-27 127.9 104 57.7
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 2.1e-27 127.5 104 64.4
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 2.7e-27 127.1 104 59.6
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 2.7e-27 127.1 152 47.4
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 4.6e-27 126.3 104 62.5
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 6.0e-27 125.9 104 63.5
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 7.9e-27 125.6 106 62.3
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 7.9e-27 125.6 104 57.7
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 1.3e-26 124.8 106 56.6
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.3e-26 124.8 104 55.8
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.3e-26 124.8 104 55.8
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 2.3e-26 124.0 104 60.6
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 3.0e-26 123.6 106 55.7
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 3.0e-26 123.6 106 55.7
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 3.0e-26 123.6 104 61.5
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.1e-26 122.9 103 55.3
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 8.7e-26 122.1 107 57.9
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 3.3e-25 120.2 104 60.6
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 4.3e-25 119.8 109 59.6
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 4.3e-25 119.8 104 57.7
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 4.3e-25 119.8 104 57.7
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 9.6e-25 118.6 104 56.7
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 1.3e-24 118.2 104 59.6
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 1.3e-24 118.2 104 59.6
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 1.3e-24 118.2 104 59.6
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 2.1e-24 117.5 104 57.7
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 8.2e-24 115.5 104 55.8
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 1.4e-23 114.8 104 57.7
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 3.1e-23 113.6 104 54.8
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 2.0e-22 110.9 104 55.8
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 1.0e-21 108.6 103 53.4
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.0e-21 108.6 104 54.8
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 4.9e-21 106.3 97 54.6
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 4.9e-21 106.3 104 53.8
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 4.2e-20 103.2 109 48.6
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 4.2e-20 103.2 109 48.6
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 2.1e-19 100.9 88 60.2
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 2.7e-19 100.5 98 50.0
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 7.9e-19 99.0 105 47.6
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 1.0e-18 98.6 114 50.0
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.3e-18 97.4 99 49.5
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 6.7e-18 95.9 105 48.6
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 2.4e-15 87.4 46 91.3
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 5.9e-14 82.8 84 53.6
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 2.5e-12 77.4 84 50.0
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 2.1e-11 74.3 82 51.2
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 1.8e-10 71.2 67 49.3
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 3.3e-09 67.0 65 52.3
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 1.1e-07 62.0 74 44.6
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 1.4e-07 61.6 74 43.2
A09p34460 Brassica napus HOM05D006505 ORTHO05D100057 1.5e-06 58.2 33 75.8
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 3.4e-06 57.0 74 41.9


User provided reference genes

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