Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t32599H Brassica oleracea HOM05D002270 ORTHO05D002866 7.8e-242 840.1 447 100.0
C05p38600 Brassica napus HOM05D002270 ORTHO05D016129 1.1e-126 457.6 233 99.6
BolC2t08403H Brassica oleracea HOM05D002270 ORTHO05D002866 3.8e-111 406.0 297 73.1
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 8.4e-111 404.8 297 72.7
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 1.2e-109 401.0 297 72.4
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 2.7e-109 399.8 297 72.1
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 9.7e-99 364.8 297 68.0
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 1.3e-95 354.4 295 65.8
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 1.9e-94 350.5 297 64.6
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 5.1e-92 342.4 297 62.3
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 1.5e-91 340.9 298 63.4
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 7.4e-91 338.6 297 61.6
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 2.8e-82 310.1 304 58.6
Sp5g22050 Schrenkiella parvula HOM05D002270 ORTHO05D002866 1.7e-74 284.3 197 75.1
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 3.1e-65 253.4 275 53.5
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 3.2e-62 243.4 267 51.7
Cpa.g.sc30.10 Carica papaya HOM05D002270 ORTHO05D002866 4.1e-41 173.3 284 39.8
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 4.7e-37 159.8 307 35.5
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 1.2e-35 155.2 276 36.2
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 1.2e-35 155.2 276 36.2
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 1.9e-33 147.9 270 37.0
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 1.6e-32 144.8 285 35.8
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 3.5e-32 143.7 277 35.4
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 3.5e-32 143.7 277 36.5
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 6.0e-32 142.9 264 36.7
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 7.8e-32 142.5 330 31.2
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 1.3e-31 141.7 258 33.7
COL.COLO4_12568 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.5e-30 138.3 308 33.1
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 1.9e-30 137.9 280 34.3
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 1.9e-30 137.9 257 33.9
TAR636G1145 Trochodendron aralioides HOM05D002270 ORTHO05D002866 1.9e-30 137.9 266 35.0
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 4.3e-30 136.7 263 35.7
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 4.3e-30 136.7 268 34.7
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 7.3e-30 136.0 280 33.9
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 1.2e-29 135.2 246 33.7
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 2.1e-29 134.4 280 33.9
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 6.2e-29 132.9 248 34.7
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 6.2e-29 132.9 238 34.0
vmacro22217 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 6.2e-29 132.9 279 32.3
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 2.3e-28 131.0 253 35.2
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 2.3e-28 131.0 277 31.4
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 3.1e-28 130.6 281 35.2
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 3.1e-28 130.6 227 34.8
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 8.9e-28 129.0 253 34.8
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 8.9e-28 129.0 243 34.2
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 1.5e-27 128.3 248 34.7
Sc15g0000370 Simmondsia chinensis HOM05D002270 ORTHO05D002866 1.5e-27 128.3 276 31.5
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 1.5e-27 128.3 252 33.7
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 2.0e-27 127.9 257 32.3
Nitab4.5_0000433g0200 Nicotiana tabacum HOM05D002270 ORTHO05D002866 2.2e-26 124.4 257 31.1
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 2.2e-26 124.4 271 33.9
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 3.7e-26 123.6 276 31.5
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 3.7e-26 123.6 279 30.8
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 4.9e-26 123.2 245 35.9
BolC9t58180H Brassica oleracea HOM05D010920 ORTHO05D014096 1.1e-25 122.1 139 54.0
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 1.1e-25 122.1 265 32.8
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 1.9e-25 121.3 268 32.8
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 3.2e-25 120.6 252 34.9
Oeu039944.3 Olea europaea HOM05D002270 ORTHO05D002866 1.6e-24 118.2 290 31.4
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 1.6e-24 118.2 276 31.5
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 2.7e-24 117.5 259 33.6
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 6.0e-24 116.3 301 30.2
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 1.0e-23 115.5 253 30.8
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 1.0e-23 115.5 283 29.7
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 5.1e-23 113.2 287 31.4
arahy.Tifrunner.gnm1.ann1.3D1K9T Arachis hypogaea HOM05D002270 ORTHO05D002866 6.6e-23 112.8 284 32.7
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 1.5e-22 111.7 322 31.7
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 1.5e-22 111.7 304 30.6
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 3.3e-22 110.5 300 32.0
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 3.3e-22 110.5 279 34.1
Hund05750 Selenicereus undatus HOM05D002270 ORTHO05D002866 3.3e-22 110.5 284 32.0
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 4.3e-22 110.2 280 31.8
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 1.2e-21 108.6 325 27.1
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 2.8e-21 107.5 288 31.6
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 2.8e-21 107.5 344 27.9
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 4.7e-21 106.7 283 31.8
Lalb_Chr20g0113911 Lupinus albus HOM05D002270 ORTHO05D002866 6.2e-21 106.3 281 31.3
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 6.2e-21 106.3 267 32.2
TPR.G29949 Trifolium pratense HOM05D002270 ORTHO05D002866 8.1e-21 105.9 216 37.0
ECA232G3855 Erigeron canadensis HOM05D002270 ORTHO05D002866 1.1e-20 105.5 236 31.4
VMungo0331G1298 Vigna mungo HOM05D002270 ORTHO05D002866 1.8e-20 104.8 263 31.2
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 2.4e-20 104.4 283 30.0
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 3.1e-20 104.0 301 31.9
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 4.0e-20 103.6 280 31.4
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 4.0e-20 103.6 249 30.1
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 5.2e-20 103.2 302 31.1
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 6.8e-20 102.8 264 31.1
SHI16816 Sapria himalayana HOM05D002270 ORTHO05D002866 2.6e-19 100.9 197 36.5
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 2.6e-19 100.9 255 29.0
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 4.4e-19 100.1 301 30.6
BraA07t28600Z Brassica rapa HOM05D010920 ORTHO05D014096 9.9e-19 99.0 73 74.0
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 9.9e-19 99.0 249 30.9
BolC2t09351H Brassica oleracea HOM05D010920 ORTHO05D014096 1.3e-18 98.6 79 69.6
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 3.8e-18 97.1 249 31.3
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 3.8e-18 97.1 249 31.3
TPR.G9775 Trifolium pratense HOM05D002270 ORTHO05D002866 3.8e-18 97.1 193 37.8
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 5.4e-17 93.2 284 28.2
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 3.5e-16 90.5 270 28.9
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 4.6e-16 90.1 247 29.6
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 1.0e-15 89.0 197 33.0
VMungo0464G0518 Vigna mungo HOM05D002270 ORTHO05D002866 6.6e-15 86.3 297 28.3
BolC4t24068H Brassica oleracea HOM05D010920 ORTHO05D106180 1.1e-14 85.5 70 68.6
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 2.5e-14 84.3 237 28.3
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 3.6e-13 80.5 234 27.4
ATR0736G011 Amborella trichopoda HOM05D002270 ORTHO05D002866 1.4e-12 78.6 270 25.9
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 2.2e-10 71.2 279 26.9
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 6.4e-10 69.7 157 31.8


User provided reference genes

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