Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t32157H Brassica oleracea HOM05D004834 ORTHO05D041010 8.6e-31 136.3 69 100.0
C05p34250 Brassica napus HOM05D004834 ORTHO05D041010 5.6e-30 133.7 69 98.6
C09p70190 Brassica napus HOM05D004834 ORTHO05D006247 4.9e-18 94.0 71 74.6
BolC9t59763H Brassica oleracea HOM05D004834 ORTHO05D006247 4.9e-18 94.0 71 74.6
A10p29810 Brassica napus HOM05D004834 ORTHO05D006247 8.4e-18 93.2 71 74.6
Thhalv10013121m.g Eutrema salsugineum HOM05D004834 ORTHO05D006247 8.4e-18 93.2 71 74.6
AT5G06580 Arabidopsis thaliana HOM05D004834 ORTHO05D006247 1.1e-17 92.8 71 74.6
Carub.0006s0546 Capsella rubella HOM05D004834 ORTHO05D006247 1.9e-17 92.0 71 73.2
CARHR206620 Cardamine hirsuta HOM05D004834 ORTHO05D006247 1.9e-17 92.0 71 73.2
Atru.chr8.1261 Acer truncatum HOM05D004834 ORTHO05D006247 2.4e-17 91.7 71 71.8
AL6G16670 Arabidopsis lyrata HOM05D004834 ORTHO05D006247 2.4e-17 91.7 71 73.2
COL.COLO4_29472 Corchorus olitorius HOM05D004834 ORTHO05D006247 2.4e-17 91.7 71 71.8
Potri.016G064800 Populus trichocarpa HOM05D004834 ORTHO05D006247 2.4e-17 91.7 71 71.8
Ciclev10011373m.g Citrus clementina HOM05D004834 ORTHO05D006247 3.2e-17 91.3 71 70.4
arahy.Tifrunner.gnm1.ann1.5D1JVS Arachis hypogaea HOM05D004834 ORTHO05D006247 4.2e-17 90.9 71 70.4
arahy.Tifrunner.gnm1.ann1.5D1K5R Arachis hypogaea HOM05D004834 ORTHO05D006247 4.2e-17 90.9 71 70.4
Manes.09G041400 Manihot esculenta HOM05D004834 ORTHO05D006247 4.2e-17 90.9 71 69.0
Sabra16G0066600 Salix brachista HOM05D004834 ORTHO05D006247 5.4e-17 90.5 76 67.1
Lalb_Chr20g0111191 Lupinus albus HOM05D004834 ORTHO05D006247 7.1e-17 90.1 71 70.4
Sp6g36280 Schrenkiella parvula HOM05D004834 ORTHO05D006247 7.1e-17 90.1 71 73.2
SGA_v2.0_scaffold112G31558 Striga asiatica HOM05D004834 ORTHO05D006247 7.1e-17 90.1 71 70.4
BraA10t45020Z Brassica rapa HOM05D004834 ORTHO05D006247 1.2e-16 89.4 71 73.2
Prupe.7G088800 Prunus persica HOM05D004834 ORTHO05D006247 1.2e-16 89.4 71 70.4
Thecc.05G183400 Theobroma cacao HOM05D004834 ORTHO05D006247 1.2e-16 89.4 71 69.0
TAR633G1355 Trochodendron aralioides HOM05D004834 ORTHO05D006247 1.2e-16 89.4 71 70.4
Aa31sc167G60 Aethionema arabicum HOM05D004834 ORTHO05D006247 1.6e-16 89.0 71 71.8
ECA238G0502 Erigeron canadensis HOM05D004834 ORTHO05D006247 1.6e-16 89.0 71 67.6
Eucgr.A02536 Eucalyptus grandis HOM05D004834 ORTHO05D006247 1.6e-16 89.0 71 71.8
Oeu035654.3 Olea europaea HOM05D004834 ORTHO05D006247 1.6e-16 89.0 71 69.0
THA.LOC104799266 Tarenaya hassleriana HOM05D004834 ORTHO05D006247 1.6e-16 89.0 71 69.0
MSTRG.19322 Avicennia marina HOM05D004834 ORTHO05D006247 2.1e-16 88.6 71 67.6
Cc06_g07030 Coffea canephora HOM05D004834 ORTHO05D006247 2.1e-16 88.6 71 69.0
QL07p026067 Quercus lobata HOM05D004834 ORTHO05D006247 2.1e-16 88.6 71 69.0
Glyma.03G205500 Glycine max HOM05D004834 ORTHO05D006247 2.7e-16 88.2 71 70.4
PSO339G5030 Papaver somniferum HOM05D004834 ORTHO05D006247 2.7e-16 88.2 71 69.0
PSO384G0426 Papaver somniferum HOM05D004834 ORTHO05D006247 2.7e-16 88.2 71 69.0
Ah.02g115150 Amaranthus hybridus HOM05D004834 ORTHO05D006247 3.5e-16 87.8 71 69.0
CANSAT64G2176 Cannabis sativa HOM05D004834 ORTHO05D006247 3.5e-16 87.8 71 69.0
Cfa020095 Carpinus fangiana HOM05D004834 ORTHO05D006247 3.5e-16 87.8 71 69.0
Haze_20096 Corylus avellana HOM05D004834 ORTHO05D006247 3.5e-16 87.8 71 69.0
Gohir.D09G128200 Gossypium hirsutum HOM05D004834 ORTHO05D006247 3.5e-16 87.8 71 67.6
Oeu063072.1 Olea europaea HOM05D004834 ORTHO05D006247 3.5e-16 87.8 71 69.0
TAR636G2709 Trochodendron aralioides HOM05D004834 ORTHO05D006247 3.5e-16 87.8 71 69.0
Duzib093G1706 Durio zibethinus HOM05D004834 ORTHO05D006247 4.6e-16 87.4 69 68.1
Lsat_1_v5_gn_2_102000 Lactuca sativa HOM05D004834 ORTHO05D006247 4.6e-16 87.4 71 67.6
MD12G1046700 Malus domestica HOM05D004834 ORTHO05D006247 4.6e-16 87.4 71 67.6
TWI53G0913 Tripterygium wilfordii HOM05D004834 ORTHO05D006247 4.6e-16 87.4 76 63.2
GSVIVG01022507001 Vitis vinifera HOM05D004834 ORTHO05D006247 4.6e-16 87.4 71 67.6
Ca_09087_v3 Cicer arietinum L. HOM05D004834 ORTHO05D006247 6.0e-16 87.0 71 70.4
Gohir.A09G131900 Gossypium hirsutum HOM05D004834 ORTHO05D006247 6.0e-16 87.0 71 66.2
HanXRQChr14g0453201 Helianthus annuus HOM05D004834 ORTHO05D006247 6.0e-16 87.0 71 66.2
Actinidia03850 Actinidia chinensis HOM05D004834 ORTHO05D006247 7.8e-16 86.7 76 64.5
EL10Ac5g11795 Beta vulgaris HOM05D004834 ORTHO05D006247 7.8e-16 86.7 71 67.6
CSS0012663 Camellia sinensis var. sinensis HOM05D004834 ORTHO05D006247 7.8e-16 86.7 71 67.6
CSS0029343 Camellia sinensis var. sinensis HOM05D004834 ORTHO05D006247 7.8e-16 86.7 71 67.6
Nn2g14430 Nelumbo nucifera HOM05D004834 ORTHO05D006247 7.8e-16 86.7 71 67.6
Phvul.001G199000 Phaseolus vulgaris HOM05D004834 ORTHO05D006247 7.8e-16 86.7 71 67.6
RcHm_v2.0_Chr3g0477531 Rosa chinensis HOM05D004834 ORTHO05D006247 7.8e-16 86.7 71 67.6
Sopen11g020840 Solanum pennellii HOM05D004834 ORTHO05D006247 7.8e-16 86.7 71 69.0
vmacro07524 Vaccinium macrocarpon HOM05D004834 ORTHO05D006247 7.8e-16 86.7 71 67.6
VMungo1383G2386 Vigna mungo HOM05D004834 ORTHO05D006247 7.8e-16 86.7 71 67.6
Psat3g026160 Pisum sativum HOM05D004834 ORTHO05D006247 1.0e-15 86.3 71 70.4
PGSC0003DMG403008663 Solanum tuberosum HOM05D004834 ORTHO05D006247 1.0e-15 86.3 71 69.0
CANSAT64G0017 Cannabis sativa HOM05D004834 ORTHO05D006247 1.3e-15 85.9 71 67.6
AUR62036303 Chenopodium quinoa HOM05D004834 ORTHO05D006247 1.3e-15 85.9 71 66.2
AUR62038413 Chenopodium quinoa HOM05D004834 ORTHO05D006247 1.3e-15 85.9 71 66.2
MBI11_g39498_MAGBIO Magnolia biondii HOM05D004834 ORTHO05D006247 1.3e-15 85.9 71 66.2
MD12G1046600 Malus domestica HOM05D004834 ORTHO05D006247 1.3e-15 85.9 71 67.6
Rhsim03G0058000 Rhododendron simsii HOM05D004834 ORTHO05D006247 1.3e-15 85.9 71 67.6
Lj1g0003379 Lotus japonicus HOM05D004834 ORTHO05D006247 1.7e-15 85.5 71 69.0
Dinv11906 Davidia involucrata HOM05D004834 ORTHO05D006247 2.3e-15 85.1 69 68.1
Migut.J00722 Erythranthe guttata HOM05D004834 ORTHO05D006247 2.3e-15 85.1 71 66.2
FAN05G2138 Fragaria x ananassa HOM05D004834 ORTHO05D006247 2.3e-15 85.1 71 66.2
Hma1.2p1_0304F.1_g119280 Hydrangea macrophylla HOM05D004834 ORTHO05D006247 2.3e-15 85.1 71 66.2
Sc01g0005240 Simmondsia chinensis HOM05D004834 ORTHO05D006247 2.3e-15 85.1 71 67.6
Aqoxy1G00576 Aquilegia oxysepala HOM05D004834 ORTHO05D006247 3.9e-15 84.3 71 66.2
MELO3C009581.2 Cucumis melo HOM05D004834 ORTHO05D006247 3.9e-15 84.3 76 61.8
CsaV3_3G038380 Cucumis sativus L. HOM05D004834 ORTHO05D006247 3.9e-15 84.3 76 61.8
unitig_26.g9147 Utricularia gibba HOM05D004834 ORTHO05D006247 3.9e-15 84.3 71 64.8
CiPaw.09G024600 Carya illinoinensis HOM05D004834 ORTHO05D006247 5.1e-15 84.0 71 67.6
FAN02G4310 Fragaria x ananassa HOM05D004834 ORTHO05D006247 5.1e-15 84.0 74 63.5
FAN05G4019 Fragaria x ananassa HOM05D004834 ORTHO05D006247 5.1e-15 84.0 74 63.5
Sed0002421 Sechium edule HOM05D004834 ORTHO05D006247 5.1e-15 84.0 76 61.8
FvH4_6g21120 Fragaria vesca HOM05D004834 ORTHO05D006247 6.6e-15 83.6 71 64.8
Gorai.006G146800 Gossypium raimondii HOM05D004834 ORTHO05D006247 6.6e-15 83.6 71 64.8
Medtr7g107050 Medicago truncatula HOM05D004834 ORTHO05D006247 6.6e-15 83.6 71 67.6
CAN.G409.3 Capsicum annuum HOM05D004834 ORTHO05D006247 8.7e-15 83.2 71 67.6
DCAR_013465 Daucus carota HOM05D004834 ORTHO05D006247 8.7e-15 83.2 70 67.1
Rhsim03G0058100 Rhododendron simsii HOM05D004834 ORTHO05D006247 1.1e-14 82.8 71 64.8
FAN14G4987 Fragaria x ananassa HOM05D004834 ORTHO05D006247 1.5e-14 82.4 74 62.2
Zm00001eb117230 Zea mays HOM05D004834 ORTHO05D006247 1.5e-14 82.4 71 64.8
ATR0697G015 Amborella trichopoda HOM05D004834 ORTHO05D006247 1.9e-14 82.0 71 64.8
Hund10783 Selenicereus undatus HOM05D004834 ORTHO05D006247 2.5e-14 81.6 71 62.0
SEGI_09254 Sequoiadendron giganteum HOM05D004834 ORTHO05D006247 2.5e-14 81.6 71 66.2
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 3.3e-14 81.3 71 62.0
SalBow1G1939 Salvia bowleyana HOM05D004834 ORTHO05D006247 1.6e-13 79.0 77 62.3
AagrBONN_evm.TU.Sc2ySwM_228.4653 Anthoceros agrestis HOM05D004834 ORTHO05D006247 2.8e-13 78.2 71 63.4
CBR_g48275 Chara braunii HOM05D004834 ORTHO05D006247 1.4e-12 75.9 71 59.2
Mapoly0056s0055 Marchantia polymorpha HOM05D004834 ORTHO05D006247 3.1e-12 74.7 69 60.9
Pp3c24_4090 Physcomitrium patens HOM05D004834 ORTHO05D006247 4.5e-11 70.9 71 60.6
Pp3c20_18170 Physcomitrium patens HOM05D004834 ORTHO05D006247 7.6e-11 70.1 71 57.7
HPP92_012150 Vanilla planifolia HOM05D004834 ORTHO05D006247 8.4e-10 66.6 65 55.4
Cpa.g.sc222.7 Carica papaya HOM05D004834 ORTHO05D006247 6.0e-08 60.5 45 71.1
AL5G44130 Arabidopsis lyrata HOM05D002045 ORTHO05D002014 1.1e-06 56.2 45 68.9


User provided reference genes

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