Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 8.5e-207 723.4 356 100.0
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 5.5e-206 720.7 356 99.4
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 4.0e-204 714.5 356 99.7
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 2.0e-195 685.6 356 95.8
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 7.0e-193 677.2 356 94.9
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.2e-192 676.4 356 94.1
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 4.9e-178 627.9 351 89.5
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.4e-177 626.3 353 88.4
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 1.9e-177 625.9 351 89.5
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 9.2e-177 623.6 354 88.4
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 4.6e-176 621.3 362 88.1
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 6.6e-175 617.5 361 88.9
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 2.5e-174 615.5 349 88.3
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 7.8e-160 567.4 357 83.2
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 5.6e-158 561.2 363 78.2
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 9.3e-153 543.9 393 72.5
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.3e-143 512.7 346 73.4
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 5.1e-143 511.5 334 75.4
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.6e-141 506.5 347 73.5
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 9.0e-140 500.7 370 68.9
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.6e-139 499.2 355 70.7
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.3e-138 496.9 331 72.2
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.6e-136 490.0 351 69.5
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 1.6e-136 490.0 383 67.1
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.1e-136 489.6 344 70.3
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 3.5e-136 488.8 320 73.4
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 6.0e-136 488.0 318 74.5
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.3e-135 486.9 339 71.4
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.3e-135 486.9 323 73.7
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.3e-135 486.9 318 74.2
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 5.1e-135 485.0 318 73.9
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 5.1e-135 485.0 320 73.8
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 6.7e-135 484.6 354 68.1
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 6.7e-135 484.6 344 69.2
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.5e-134 482.6 324 70.7
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 3.3e-134 482.3 348 67.8
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 3.3e-134 482.3 348 69.5
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 4.3e-134 481.9 351 67.8
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 9.6e-134 480.7 349 69.3
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.6e-133 479.9 347 68.6
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 2.1e-133 479.6 324 71.6
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 2.8e-133 479.2 324 72.2
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 3.7e-133 478.8 323 72.1
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.7e-133 478.8 344 68.9
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 4.8e-133 478.4 328 71.6
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 6.2e-133 478.0 345 68.1
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 6.2e-133 478.0 336 70.2
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.1e-132 477.2 324 70.7
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.8e-132 476.5 325 72.0
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 5.3e-132 474.9 331 70.4
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 5.3e-132 474.9 329 69.9
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 6.9e-132 474.6 350 68.6
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 9.0e-132 474.2 344 67.7
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 9.0e-132 474.2 325 70.8
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.2e-131 473.8 339 69.3
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.2e-131 473.8 348 67.5
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.2e-131 473.8 348 67.5
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 1.5e-131 473.4 324 71.0
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.0e-131 473.0 324 69.4
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 2.6e-131 472.6 349 67.9
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 3.4e-131 472.2 341 68.3
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 4.5e-131 471.9 329 70.5
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 5.8e-131 471.5 319 71.8
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 5.8e-131 471.5 320 71.6
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.3e-130 470.3 355 67.9
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.7e-130 469.9 347 67.1
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.7e-130 469.9 373 65.1
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.2e-130 469.5 322 71.4
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 4.9e-130 468.4 342 69.0
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 4.9e-130 468.4 322 71.7
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 4.2e-129 465.3 343 66.5
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 5.5e-129 464.9 331 69.8
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 9.3e-129 464.2 320 70.9
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 9.3e-129 464.2 348 66.7
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.6e-128 463.4 350 67.4
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.6e-128 463.4 335 67.8
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.7e-128 462.6 305 73.1
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.3e-127 460.3 333 67.0
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.3e-127 460.3 333 68.5
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.8e-127 459.9 316 72.5
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.3e-127 459.5 354 65.5
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.3e-127 459.5 350 66.0
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 2.3e-127 459.5 325 70.5
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 3.0e-127 459.1 330 67.3
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 5.1e-127 458.4 358 65.1
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 5.1e-127 458.4 350 65.4
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.1e-126 457.2 321 68.5
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.5e-126 456.8 351 65.8
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.9e-126 456.4 350 66.0
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 2.5e-126 456.1 330 69.7
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.5e-126 456.1 325 69.2
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 7.4e-126 454.5 336 68.8
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.3e-125 453.8 302 73.2
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.6e-125 453.4 333 67.9
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.6e-125 453.4 365 63.6
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 2.1e-125 453.0 333 68.8
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 2.1e-125 453.0 337 66.8
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 4.8e-125 451.8 320 68.8
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 4.8e-125 451.8 344 66.0
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.1e-124 450.7 360 62.8
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 1.4e-124 450.3 330 68.5
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 2.4e-124 449.5 338 66.6
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.5e-123 446.8 330 67.3
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.5e-123 446.8 344 64.5
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.6e-123 446.0 306 70.9
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 2.2e-122 443.0 325 67.4
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 3.8e-122 442.2 319 69.3
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 6.5e-122 441.4 320 67.8
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.2e-121 439.1 320 66.2
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 4.2e-121 438.7 338 65.1
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 5.5e-121 438.3 346 66.2
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 9.3e-121 437.6 334 66.5
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 4.6e-120 435.3 308 68.8
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 6.1e-120 434.9 337 63.8
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.8e-119 433.3 331 64.7
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.5e-118 430.3 320 67.5
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.3e-118 429.1 380 59.2
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 5.7e-118 428.3 317 67.2
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 9.7e-118 427.6 333 65.2
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.8e-116 423.3 326 65.3
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 3.4e-115 419.1 342 62.3
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.3e-114 417.2 328 64.6
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 2.7e-112 409.5 539 45.3
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 3.6e-112 409.1 323 64.1
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 2.3e-111 406.4 318 63.5
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.3e-109 400.6 270 73.3
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 5.9e-107 391.7 318 61.6
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 2.7e-104 382.9 267 71.9
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 3.9e-103 379.0 254 72.0
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 6.7e-103 378.3 268 69.8
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.9e-98 362.8 325 57.8
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.3e-90 337.4 280 62.5
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 3.2e-89 332.8 233 68.2
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 4.2e-89 332.4 222 73.0
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.6e-88 330.5 332 53.0
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.3e-87 326.6 207 74.9
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 5.2e-87 325.5 323 51.7
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.1e-84 317.8 266 62.0
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 5.4e-84 315.5 210 75.7
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.9e-81 307.0 217 68.7
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 6.1e-80 302.0 287 53.7
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 3.0e-79 299.7 237 65.0
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 2.5e-73 280.0 163 82.8
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 2.7e-67 260.0 376 42.0
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.4e-60 236.9 184 64.1
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 7.0e-60 235.3 167 68.3
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 6.6e-58 228.8 144 77.8
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.1e-57 228.0 158 71.5
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 9.5e-57 224.9 161 72.0
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 1.1e-49 201.4 163 62.0
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 9.5e-49 198.4 325 40.0
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.3e-45 188.0 256 43.4
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.6e-43 181.0 189 52.4
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 3.0e-42 176.8 120 65.8
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 1.2e-30 138.3 107 69.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.9e-29 133.7 305 32.8
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 3.5e-27 126.7 248 33.1
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 4.6e-27 126.3 383 29.8
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 3.0e-26 123.6 67 83.6
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.8e-24 117.1 97 53.6
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.1e-23 113.6 128 50.0
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.9e-17 94.4 56 82.1
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 5.6e-17 92.8 57 75.4
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 2.0e-14 84.3 57 71.9
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 4.5e-14 83.2 84 47.6
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.7e-11 73.9 60 60.0
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 7.9e-11 72.4 59 57.6
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 4.8e-08 63.2 100 42.0


User provided reference genes

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