Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 2.1e-158 562.4 297 100.0
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 3.6e-158 561.6 297 99.7
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 4.4e-156 554.7 297 98.0
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 2.2e-155 552.4 297 97.6
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 8.9e-141 503.8 298 91.3
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 8.3e-139 497.3 303 89.1
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 1.8e-138 496.1 298 89.9
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 3.4e-132 475.3 298 86.2
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 1.3e-131 473.4 328 80.2
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 5.4e-130 468.0 304 84.9
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 2.0e-129 466.1 303 85.5
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 5.0e-128 461.5 311 82.6
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 4.1e-122 441.8 310 80.0
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 3.2e-114 415.6 246 89.8
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 3.3e-111 405.6 311 74.9
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 2.0e-108 396.4 214 95.3
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 4.4e-108 395.2 212 95.3
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 1.7e-104 383.3 298 73.8
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 2.9e-99 365.9 309 71.5
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 4.2e-98 362.1 337 63.8
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 7.8e-97 357.8 231 82.3
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 3.3e-95 352.4 231 81.8
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 3.3e-95 352.4 231 81.8
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 7.3e-95 351.3 231 81.0
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 2.1e-94 349.7 231 81.0
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 2.8e-94 349.4 332 61.4
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 3.6e-94 349.0 253 77.1
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 6.2e-94 348.2 252 77.4
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 6.2e-94 348.2 263 73.4
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 1.4e-93 347.1 253 76.7
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 2.4e-93 346.3 340 62.9
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 4.0e-93 345.5 206 86.4
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 9.0e-93 344.4 278 68.3
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 1.2e-92 344.0 203 83.3
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 2.0e-92 343.2 229 77.7
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 3.4e-92 342.4 222 79.3
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 4.5e-92 342.0 230 80.0
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 7.6e-92 341.3 272 71.3
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 1.3e-91 340.5 237 75.9
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 2.2e-91 339.7 220 80.9
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 2.9e-91 339.3 277 66.1
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 8.4e-91 337.8 222 79.7
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 1.1e-90 337.4 309 64.7
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 1.9e-90 336.7 299 64.5
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 1.9e-90 336.7 318 61.3
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 1.9e-90 336.7 284 65.8
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 2.4e-90 336.3 222 79.7
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 3.2e-90 335.9 310 61.6
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 3.2e-90 335.9 206 84.0
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 3.2e-90 335.9 240 76.2
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 5.4e-90 335.1 230 75.2
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 5.4e-90 335.1 225 78.7
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 7.1e-90 334.7 230 77.4
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 1.2e-89 334.0 206 83.5
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 1.6e-89 333.6 229 77.7
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 1.6e-89 333.6 229 77.7
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 2.1e-89 333.2 231 77.9
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 2.1e-89 333.2 204 83.8
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 3.5e-89 332.4 207 83.1
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 6.0e-89 331.6 224 76.8
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 6.0e-89 331.6 272 66.2
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 6.0e-89 331.6 253 73.1
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 6.0e-89 331.6 222 78.8
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 1.0e-88 330.9 220 79.1
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 1.0e-88 330.9 220 79.1
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 1.8e-88 330.1 308 62.7
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 1.8e-88 330.1 224 79.5
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 1.8e-88 330.1 221 78.7
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 2.3e-88 329.7 269 68.4
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 2.3e-88 329.7 206 82.0
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 3.9e-88 328.9 268 69.0
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 5.1e-88 328.6 220 78.2
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 5.1e-88 328.6 206 80.1
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 8.7e-88 327.8 272 65.8
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 8.7e-88 327.8 238 72.7
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 1.5e-87 327.0 206 82.5
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 1.9e-87 326.6 204 80.4
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 1.9e-87 326.6 282 64.5
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.9e-87 326.6 272 65.8
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 1.9e-87 326.6 221 77.4
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 2.5e-87 326.2 239 71.5
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 4.3e-87 325.5 209 80.4
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 7.4e-87 324.7 198 81.8
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 9.6e-87 324.3 222 76.1
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 1.3e-86 323.9 209 80.4
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 3.7e-86 322.4 220 75.5
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 3.7e-86 322.4 221 75.6
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 6.2e-86 321.6 221 75.6
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 1.1e-85 320.9 251 68.9
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 1.1e-85 320.9 222 74.3
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 1.8e-85 320.1 230 72.6
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 2.4e-85 319.7 221 74.2
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 3.1e-85 319.3 324 59.9
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 3.1e-85 319.3 193 83.4
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 6.9e-85 318.2 276 62.3
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 3.4e-84 315.8 407 50.9
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 3.4e-84 315.8 327 58.7
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 4.5e-84 315.5 232 72.4
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 6.4e-83 311.6 237 70.9
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 1.4e-82 310.5 206 79.1
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 7.1e-82 308.1 209 75.6
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 9.3e-82 307.8 183 84.7
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 3.0e-80 302.8 287 59.6
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 9.6e-79 297.7 323 56.7
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 1.3e-75 287.3 294 59.2
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 1.5e-71 273.9 223 67.3
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 9.7e-71 271.2 209 70.8
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 6.9e-69 265.0 206 70.4
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 2.0e-68 263.5 220 61.4
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 7.4e-63 245.0 182 64.8
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 2.4e-61 240.0 208 57.7
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 7.7e-60 235.0 144 80.6
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 5.0e-51 205.7 162 61.7
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 1.1e-50 204.5 210 51.9
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 2.1e-49 200.3 207 51.2
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 2.0e-47 193.7 218 47.7
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 5.3e-45 185.7 177 52.5
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 9.1e-45 184.9 229 44.5
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 2.7e-41 173.3 115 80.0
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 3.1e-37 159.8 144 62.5
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 5.2e-32 142.5 159 54.7
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 1.8e-24 117.5 149 38.3
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 3.7e-22 109.8 65 83.1
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 6.1e-17 92.4 96 55.2
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 2.3e-16 90.5 53 84.9
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 3.4e-15 86.7 49 91.8


User provided reference genes

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