Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t30835H Brassica oleracea HOM05D002704 ORTHO05D002891 8.0e-106 387.1 196 100.0
C05p21380 Brassica napus HOM05D002704 ORTHO05D002891 1.5e-96 356.3 186 96.2
A09p42520 Brassica napus HOM05D002704 ORTHO05D002891 2.4e-94 349.0 198 91.9
BraA09t39728Z Brassica rapa HOM05D002704 ORTHO05D002891 2.4e-94 349.0 198 91.9
BcaC05g26153 Brassica carinata HOM05D002704 ORTHO05D002891 4.7e-90 334.7 186 92.5
BcaB03g14224 Brassica carinata HOM05D002704 ORTHO05D002891 3.4e-72 275.4 200 74.0
Thhalv10008815m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 3.7e-71 271.9 196 74.5
BcaC06g34946 Brassica carinata HOM05D002704 ORTHO05D002891 6.4e-71 271.2 197 73.6
C07p21480 Brassica napus HOM05D002704 ORTHO05D002891 6.4e-71 271.2 197 73.6
BolC7t42674H Brassica oleracea HOM05D002704 ORTHO05D002891 6.4e-71 271.2 197 73.6
Sp1g19760 Schrenkiella parvula HOM05D002704 ORTHO05D002891 9.2e-70 267.3 181 77.9
A07p14590 Brassica napus HOM05D002704 ORTHO05D002891 6.0e-69 264.6 197 72.6
BraA07t29205Z Brassica rapa HOM05D002704 ORTHO05D002891 1.7e-68 263.1 197 72.1
BcaB07g32247 Brassica carinata HOM05D002704 ORTHO05D002891 1.2e-66 256.9 197 74.1
AT1G22250 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 2.1e-66 256.1 198 71.2
BcaB03g14223 Brassica carinata HOM05D002704 ORTHO05D002891 2.8e-66 255.8 188 73.9
Carub.0001s2180 Capsella rubella HOM05D002704 ORTHO05D002891 1.7e-60 236.5 198 66.7
AL1G35710 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 1.6e-50 203.4 184 65.8
Aa31LG7G6190 Aethionema arabicum HOM05D002704 ORTHO05D002891 6.0e-45 184.9 219 53.9
CARHR022620 Cardamine hirsuta HOM05D002704 ORTHO05D002891 9.0e-41 171.0 122 76.2
AL2G38480 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 1.3e-36 157.1 228 48.7
BcaC08g47392 Brassica carinata HOM05D002704 ORTHO05D002891 3.0e-36 156.0 223 49.3
C06p52120 Brassica napus HOM05D002704 ORTHO05D002891 3.0e-36 156.0 223 49.3
BolC6t40235H Brassica oleracea HOM05D002704 ORTHO05D002891 3.0e-36 156.0 223 49.3
CARHR071630 Cardamine hirsuta HOM05D002704 ORTHO05D002891 2.1e-34 149.8 231 47.6
Thhalv10019097m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 2.1e-34 149.8 230 48.3
Sp5g33290 Schrenkiella parvula HOM05D002704 ORTHO05D002891 2.8e-34 149.4 229 48.5
A07p27670 Brassica napus HOM05D002704 ORTHO05D002891 3.7e-34 149.1 228 48.2
AT1G78170 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 8.1e-34 147.9 227 47.6
BraA07t30408Z Brassica rapa HOM05D002704 ORTHO05D002891 5.3e-33 145.2 224 47.3
BcaB05g25124 Brassica carinata HOM05D002704 ORTHO05D002891 7.1e-30 134.8 222 43.2
Aa31LG4G8210 Aethionema arabicum HOM05D002704 ORTHO05D002891 1.2e-29 134.0 219 44.3
BcaB03g15984 Brassica carinata HOM05D002704 ORTHO05D002891 7.9e-29 131.3 231 43.3
BcaB02g07152 Brassica carinata HOM05D002704 ORTHO05D002891 1.5e-27 127.1 234 41.9
THA.LOC104809714 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 9.6e-27 124.4 231 42.9
BcaC08g45431 Brassica carinata HOM05D002704 ORTHO05D002891 1.8e-25 120.2 249 39.8
C06p30640 Brassica napus HOM05D002704 ORTHO05D002891 1.8e-25 120.2 249 39.8
BolC6t38228H Brassica oleracea HOM05D002704 ORTHO05D002891 1.8e-25 120.2 249 39.8
Carub.0002s2506 Capsella rubella HOM05D002704 ORTHO05D002891 2.4e-25 119.8 224 41.1
A07p43470 Brassica napus HOM05D002704 ORTHO05D002891 3.4e-24 115.9 222 38.7
BraA07t31860Z Brassica rapa HOM05D002704 ORTHO05D002891 3.4e-24 115.9 222 38.7
BraA02t07210Z Brassica rapa HOM05D002704 ORTHO05D002891 7.6e-24 114.8 221 40.7
A02p22080 Brassica napus HOM05D002704 ORTHO05D002891 1.3e-23 114.0 217 41.0
BolC2t09563H Brassica oleracea HOM05D002704 ORTHO05D002891 1.3e-23 114.0 207 42.0
THA.LOC104800151 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 2.1e-21 106.7 231 39.8
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 2.8e-18 96.3 107 54.2
CARHR022610 Cardamine hirsuta HOM05D002704 ORTHO05D002891 6.9e-17 91.7 75 68.0
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 1.3e-15 87.4 111 51.4
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 6.5e-15 85.1 110 49.1
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 8.5e-15 84.7 108 48.1
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 8.5e-15 84.7 210 34.3
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.4e-14 84.0 139 41.7
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 1.9e-14 83.6 141 42.6
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 3.2e-14 82.8 200 35.5
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 3.2e-14 82.8 139 43.9
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 7.2e-14 81.6 139 41.0
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 7.2e-14 81.6 112 42.9
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 9.4e-14 81.3 174 37.4
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 1.2e-13 80.9 108 48.1
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.6e-13 80.5 108 46.3
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 2.1e-13 80.1 139 41.7
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 2.1e-13 80.1 214 35.0
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 2.7e-13 79.7 57 63.2
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 2.7e-13 79.7 57 64.9
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 3.6e-13 79.3 138 42.0
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 3.6e-13 79.3 113 48.7
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 3.6e-13 79.3 209 32.5
Glyma.14G172800 Glycine max HOM05D002704 ORTHO05D002891 3.6e-13 79.3 111 47.7
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 7.9e-13 78.2 104 46.2
Ca_15248_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 1.0e-12 77.8 203 36.9
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 1.0e-12 77.8 110 43.6
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 1.0e-12 77.8 109 43.1
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.0e-12 77.8 105 48.6
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 1.4e-12 77.4 116 43.1
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 1.4e-12 77.4 191 30.9
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 1.4e-12 77.4 111 47.7
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.4e-12 77.4 51 68.6
unitig_578.g16200 Utricularia gibba HOM05D002704 ORTHO05D002891 1.4e-12 77.4 112 44.6
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 2.3e-12 76.6 157 39.5
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 3.0e-12 76.3 79 53.2
arahy.Tifrunner.gnm1.ann1.8HDV7G Arachis hypogaea HOM05D002704 ORTHO05D002891 3.0e-12 76.3 153 37.3
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 3.0e-12 76.3 88 54.5
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 3.0e-12 76.3 203 35.5
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 3.0e-12 76.3 64 56.2
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 3.0e-12 76.3 153 41.2
VMungo1309G0496 Vigna mungo HOM05D002704 ORTHO05D002891 3.9e-12 75.9 205 36.6
Glyma.13G088900 Glycine max HOM05D002704 ORTHO05D002891 5.1e-12 75.5 100 45.0
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 5.1e-12 75.5 203 34.0
unitig_8.g4838 Utricularia gibba HOM05D002704 ORTHO05D002891 6.7e-12 75.1 121 42.1
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 8.8e-12 74.7 113 46.9
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 8.8e-12 74.7 184 36.4
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 8.8e-12 74.7 83 48.2
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 1.1e-11 74.3 110 42.7
A01p24680 Brassica napus HOM05D002704 ORTHO05D002891 2.0e-11 73.6 104 51.0
BraA01t02380Z Brassica rapa HOM05D002704 ORTHO05D002891 2.0e-11 73.6 104 51.0
Psat5g138480 Pisum sativum HOM05D002704 ORTHO05D002891 2.0e-11 73.6 136 41.9
Phvul.008G173300 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 2.5e-11 73.2 115 44.3
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 2.5e-11 73.2 200 33.5
arahy.Tifrunner.gnm1.ann1.AF75R2 Arachis hypogaea HOM05D002704 ORTHO05D002891 3.3e-11 72.8 118 41.5
Lalb_Chr11g0065441 Lupinus albus HOM05D002704 ORTHO05D002891 3.3e-11 72.8 193 33.7
Migut.N02898 Erythranthe guttata HOM05D002704 ORTHO05D002891 4.3e-11 72.4 50 60.0
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 4.3e-11 72.4 115 40.9
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 5.7e-11 72.0 125 43.2
CiPaw.07G180300 Carya illinoinensis HOM05D002704 ORTHO05D002891 7.4e-11 71.6 47 70.2
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 7.4e-11 71.6 115 42.6
Glyma.06G103700 Glycine max HOM05D002704 ORTHO05D002891 9.7e-11 71.2 71 54.9
Medtr3g074450 Medicago truncatula HOM05D002704 ORTHO05D002891 9.7e-11 71.2 131 43.5
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 9.7e-11 71.2 96 47.9
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 9.7e-11 71.2 124 41.9
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 1.3e-10 70.9 105 44.8
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 1.3e-10 70.9 110 43.6
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 1.3e-10 70.9 115 42.6
Nitab4.5_0002098g0040 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.7e-10 70.5 97 43.3
VMungo0647G0311 Vigna mungo HOM05D002704 ORTHO05D002891 2.2e-10 70.1 162 32.7
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 2.8e-10 69.7 106 45.3
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 3.7e-10 69.3 104 44.2
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 3.7e-10 69.3 94 45.7
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 4.8e-10 68.9 118 42.4
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 4.8e-10 68.9 103 41.7
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 6.3e-10 68.6 215 34.0
PSO541G2691 Papaver somniferum HOM05D002704 ORTHO05D002891 6.3e-10 68.6 161 34.8
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 8.2e-10 68.2 131 39.7
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 8.2e-10 68.2 58 60.3
Lalb_Chr10g0102361 Lupinus albus HOM05D002704 ORTHO05D002891 8.2e-10 68.2 110 42.7
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 1.1e-09 67.8 119 41.2
PSO781G0307 Papaver somniferum HOM05D002704 ORTHO05D002891 1.1e-09 67.8 97 46.4
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 1.4e-09 67.4 229 30.1
arahy.Tifrunner.gnm1.ann1.5JIN69 Arachis hypogaea HOM05D002704 ORTHO05D002891 1.8e-09 67.0 124 37.9
CARHR259930 Cardamine hirsuta HOM05D002704 ORTHO05D002891 1.8e-09 67.0 199 31.7
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 1.8e-09 67.0 58 58.6
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.8e-09 67.0 58 58.6
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 1.8e-09 67.0 72 50.0
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 2.4e-09 66.6 143 39.2
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 2.4e-09 66.6 48 64.6
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 2.4e-09 66.6 58 58.6
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 2.4e-09 66.6 106 43.4
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 4.1e-09 65.9 104 43.3
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 4.1e-09 65.9 94 45.7
Lalb_Chr23g0270591 Lupinus albus HOM05D002704 ORTHO05D002891 5.3e-09 65.5 138 37.7
unitig_578.g16524 Utricularia gibba HOM05D002704 ORTHO05D002891 5.3e-09 65.5 107 40.2
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 1.2e-08 64.3 57 54.4
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 1.5e-08 63.9 58 56.9
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 2.0e-08 63.5 137 37.2
Lalb_Chr04g0253151 Lupinus albus HOM05D002704 ORTHO05D002891 2.6e-08 63.2 104 44.2
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 2.6e-08 63.2 116 40.5
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 2.6e-08 63.2 104 42.3
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 3.4e-08 62.8 94 43.6
AL6G41650 Arabidopsis lyrata HOM05D002704 ORTHO05D002891 4.5e-08 62.4 188 34.0
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 4.5e-08 62.4 109 42.2
AT4G08910 Arabidopsis thaliana HOM05D002704 ORTHO05D002891 7.7e-08 61.6 186 32.3
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 1.0e-07 61.2 45 60.0
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 1.0e-07 61.2 67 49.3
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.0e-07 61.2 109 43.1
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.3e-07 60.8 96 43.8
Thhalv10028969m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 1.3e-07 60.8 195 33.3
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.3e-07 60.8 126 39.7
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 2.9e-07 59.7 49 55.1
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 2.9e-07 59.7 105 39.0
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 3.8e-07 59.3 177 31.6
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 3.8e-07 59.3 215 29.8
Carub.0006s2748 Capsella rubella HOM05D002704 ORTHO05D002891 5.0e-07 58.9 114 39.5
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 5.0e-07 58.9 172 31.4
THA.LOC104816761 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 6.5e-07 58.5 89 40.4
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.4e-06 57.4 106 37.7
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 1.4e-06 57.4 31 77.4
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 3.2e-06 56.2 190 32.1
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 4.2e-06 55.8 94 39.4
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 4.2e-06 55.8 146 28.1
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 5.5e-06 55.5 31 71.0


User provided reference genes

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