Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 5.0e-123 444.5 234 100.0
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 1.1e-122 443.4 234 99.6
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 4.7e-105 384.8 262 82.8
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 2.9e-94 349.0 253 78.7
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 2.9e-94 349.0 253 78.7
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 2.9e-94 349.0 253 78.7
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 6.0e-92 341.3 254 76.0
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 1.7e-91 339.7 254 75.6
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 1.5e-90 336.7 255 76.1
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 7.6e-87 324.3 255 73.7
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 9.3e-85 317.4 255 72.5
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 3.0e-83 312.4 256 70.7
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 3.0e-83 312.4 255 70.2
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 2.5e-82 309.3 253 70.8
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 2.0e-79 299.7 255 68.6
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 7.6e-79 297.7 255 69.4
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 9.3e-69 264.2 253 56.9
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 1.2e-68 263.8 255 57.3
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 4.6e-68 261.9 247 57.1
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 7.9e-68 261.2 254 57.5
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 1.0e-67 260.8 255 59.2
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 1.3e-67 260.4 255 62.0
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 1.8e-67 260.0 244 58.6
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 3.0e-67 259.2 253 56.5
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 3.9e-67 258.8 252 57.9
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 6.7e-67 258.1 245 56.3
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 1.1e-66 257.3 254 57.5
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 1.5e-66 256.9 253 56.1
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 2.5e-66 256.1 255 55.3
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 2.5e-66 256.1 253 55.3
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 3.3e-66 255.8 250 57.2
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 7.4e-66 254.6 252 57.1
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 9.6e-66 254.2 255 57.3
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 9.6e-66 254.2 244 56.6
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 9.6e-66 254.2 247 55.5
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 9.6e-66 254.2 252 55.6
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 1.3e-65 253.8 256 55.5
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 1.6e-65 253.4 244 56.1
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 2.1e-65 253.1 256 53.9
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 2.8e-65 252.7 255 54.9
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 3.7e-65 252.3 252 60.3
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 3.7e-65 252.3 255 56.9
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 8.1e-65 251.1 255 54.9
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.4e-64 250.4 255 59.2
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 1.8e-64 250.0 256 57.8
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.8e-64 250.0 254 59.4
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 3.1e-64 249.2 255 58.8
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 4.0e-64 248.8 253 56.1
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 6.9e-64 248.1 256 53.1
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 1.2e-63 247.3 254 55.9
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.2e-63 247.3 258 53.1
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 1.2e-63 247.3 255 57.3
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 1.5e-63 246.9 185 68.1
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 1.5e-63 246.9 254 55.5
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 1.0e-62 244.2 254 55.5
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 1.0e-62 244.2 262 58.0
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 1.7e-62 243.4 255 56.9
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 6.5e-62 241.5 245 58.4
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 8.4e-62 241.1 255 56.5
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 8.4e-62 241.1 255 58.4
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 1.9e-61 240.0 254 55.1
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 1.9e-61 240.0 255 56.9
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 1.9e-61 240.0 257 52.9
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 2.5e-61 239.6 258 54.3
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 3.2e-61 239.2 250 56.4
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 5.5e-61 238.4 262 55.0
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 7.1e-61 238.0 263 52.9
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 7.1e-61 238.0 259 57.9
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 7.1e-61 238.0 259 57.9
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 1.2e-60 237.3 254 56.7
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 1.2e-60 237.3 250 58.4
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 2.1e-60 236.5 184 65.8
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 2.7e-60 236.1 249 53.8
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 3.5e-60 235.7 261 56.3
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 4.6e-60 235.3 257 51.8
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 7.9e-60 234.6 253 53.0
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 1.3e-59 233.8 184 64.1
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.8e-59 233.4 262 50.4
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 1.8e-59 233.4 249 53.8
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 2.3e-59 233.0 251 53.4
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 2.3e-59 233.0 281 53.4
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 2.3e-59 233.0 183 64.5
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 3.9e-59 232.3 235 52.3
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 3.9e-59 232.3 255 56.5
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 5.1e-59 231.9 257 57.2
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 6.7e-59 231.5 251 53.0
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 6.7e-59 231.5 183 65.0
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 1.9e-58 229.9 185 63.2
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 1.9e-58 229.9 187 62.6
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 3.3e-58 229.2 263 54.8
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 4.3e-58 228.8 288 50.3
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 5.7e-58 228.4 263 55.5
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 5.7e-58 228.4 253 52.6
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 7.4e-58 228.0 170 65.9
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 7.4e-58 228.0 263 55.5
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 1.3e-57 227.3 179 62.0
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 1.6e-57 226.9 263 55.5
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 2.8e-57 226.1 259 52.5
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 3.7e-57 225.7 184 64.1
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 6.3e-57 224.9 184 63.0
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 8.2e-57 224.6 183 62.8
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 1.8e-56 223.4 261 49.0
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 2.4e-56 223.0 180 62.8
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 9.0e-56 221.1 243 53.9
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 1.2e-55 220.7 184 62.0
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 1.2e-55 220.7 184 61.4
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 5.9e-55 218.4 258 54.3
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 1.0e-54 217.6 168 65.5
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 3.8e-54 215.7 255 56.9
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 8.5e-54 214.5 198 56.1
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 2.5e-53 213.0 182 59.3
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 2.1e-52 209.9 178 59.0
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 2.1e-52 209.9 244 48.4
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 3.6e-52 209.1 244 45.9
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 7.9e-52 208.0 253 50.2
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 1.9e-45 186.8 180 52.8
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 1.2e-44 184.1 184 51.1
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 4.4e-42 175.6 179 49.7
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 1.4e-40 170.6 229 47.2
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 6.9e-40 168.3 179 49.2
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 7.7e-39 164.9 182 48.9
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 9.7e-26 121.3 285 29.5
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 1.9e-21 107.1 69 69.6
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 2.5e-21 106.7 163 45.4
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 3.2e-21 106.3 119 52.1
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.5e-10 70.9 46 71.7
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 3.8e-06 56.2 31 83.9


User provided reference genes

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