Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29235H Brassica oleracea HOM05D001068 ORTHO05D020229 5.0e-90 334.3 160 100.0
BolC5t29403H Brassica oleracea HOM05D001068 ORTHO05D002190 1.8e-76 289.3 160 87.5
BcaB02g06806 Brassica carinata HOM05D001068 ORTHO05D002190 7.0e-76 287.3 159 86.2
BcaC05g24284 Brassica carinata HOM05D001068 ORTHO05D002190 7.3e-73 277.3 159 84.3
BcaC05g24275 Brassica carinata HOM05D001068 ORTHO05D002190 9.5e-73 276.9 159 86.8
C05p04640 Brassica napus HOM05D001068 ORTHO05D002190 9.5e-73 276.9 159 86.8
A10p05050 Brassica napus HOM05D001068 ORTHO05D002190 3.1e-71 271.9 159 83.6
BraA10t42771Z Brassica rapa HOM05D001068 ORTHO05D002190 3.1e-71 271.9 159 83.6
Sp1g05100 Schrenkiella parvula HOM05D001068 ORTHO05D002190 3.5e-67 258.5 150 83.3
BolC5t29237H Brassica oleracea HOM05D001068 ORTHO05D002190 1.7e-66 256.1 147 84.4
BcaB02g06804 Brassica carinata HOM05D001068 ORTHO05D002190 5.0e-66 254.6 159 81.1
Thhalv10006988m.g Eutrema salsugineum HOM05D001068 ORTHO05D002190 6.6e-66 254.2 150 80.0
AL1G16320 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 1.1e-65 253.4 159 78.0
AT1G06310 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 1.9e-65 252.7 159 77.4
A10p05020 Brassica napus HOM05D001068 ORTHO05D002190 4.3e-65 251.5 150 78.7
BraA10t42768Z Brassica rapa HOM05D001068 ORTHO05D002190 4.3e-65 251.5 150 78.7
BcaB02g06807 Brassica carinata HOM05D001068 ORTHO05D002190 9.5e-65 250.4 150 76.7
CARHR005870 Cardamine hirsuta HOM05D001068 ORTHO05D002190 9.5e-65 250.4 150 78.7
AT1G06290 Arabidopsis thaliana HOM05D001068 ORTHO05D002190 6.2e-64 247.7 150 78.7
BolC5t29234H Brassica oleracea HOM05D001068 ORTHO05D002190 6.2e-64 247.7 150 77.3
BcaC05g24286 Brassica carinata HOM05D001068 ORTHO05D002190 8.0e-64 247.3 150 78.0
AL1G16310 Arabidopsis lyrata HOM05D001068 ORTHO05D002190 1.4e-63 246.5 150 78.0
Carub.0001s0566 Capsella rubella HOM05D001068 ORTHO05D002190 2.3e-63 245.7 150 77.3
C05p04620 Brassica napus HOM05D001068 ORTHO05D002190 6.8e-63 244.2 152 77.0
Aa31LG1G7310 Aethionema arabicum HOM05D001068 ORTHO05D002190 4.1e-60 235.0 150 74.7
THA.LOC104800850 Tarenaya hassleriana HOM05D001068 ORTHO05D002190 2.3e-58 229.2 148 70.9
Thhalv10009440m.g Eutrema salsugineum HOM05D001068 ORTHO05D002190 3.1e-55 218.8 138 74.6
Cpa.g.sc50.2 Carica papaya HOM05D001068 ORTHO05D002190 4.7e-48 194.9 147 63.9
Gohir.A01G019800 Gossypium hirsutum HOM05D001068 ORTHO05D002190 8.9e-47 190.7 145 60.7
Gohir.D01G018400 Gossypium hirsutum HOM05D001068 ORTHO05D002190 8.9e-47 190.7 145 60.7
Gorai.002G020600 Gossypium raimondii HOM05D001068 ORTHO05D002190 8.9e-47 190.7 145 60.7
Gohir.D01G018500 Gossypium hirsutum HOM05D001068 ORTHO05D002190 1.2e-46 190.3 145 61.4
Gorai.002G020700 Gossypium raimondii HOM05D001068 ORTHO05D002190 1.2e-46 190.3 145 61.4
Thecc.02G188700 Theobroma cacao HOM05D001068 ORTHO05D002190 2.6e-46 189.1 149 57.7
FvH4_6g26900 Fragaria vesca HOM05D001068 ORTHO05D002190 4.4e-46 188.3 143 62.2
FAN14G5876 Fragaria x ananassa HOM05D001068 ORTHO05D002190 4.4e-46 188.3 143 62.2
Gohir.A01G019900 Gossypium hirsutum HOM05D001068 ORTHO05D002190 4.4e-46 188.3 145 58.6
Duzib052G0179 Durio zibethinus HOM05D001068 ORTHO05D002190 7.6e-46 187.6 149 59.1
FAN05G5054 Fragaria x ananassa HOM05D001068 ORTHO05D002190 9.9e-46 187.2 143 61.5
Lj3g0024792 Lotus japonicus HOM05D001068 ORTHO05D002190 1.7e-45 186.4 153 59.5
Nn1g04278 Nelumbo nucifera HOM05D001068 ORTHO05D002190 2.2e-45 186.0 151 57.6
TAR627G0187 Trochodendron aralioides HOM05D001068 ORTHO05D002190 4.9e-45 184.9 149 58.4
Ciclev10014502m.g Citrus clementina HOM05D001068 ORTHO05D002190 8.4e-45 184.1 147 59.9
Phvul.011G116000 Phaseolus vulgaris HOM05D001068 ORTHO05D002190 1.1e-44 183.7 142 57.7
VMungo1127G1013 Vigna mungo HOM05D001068 ORTHO05D002190 1.1e-44 183.7 148 55.4
VMungo1127G1511 Vigna mungo HOM05D001068 ORTHO05D020229 1.1e-44 183.7 148 55.4
Duzib248G0800 Durio zibethinus HOM05D001068 ORTHO05D002190 3.2e-44 182.2 149 55.0
Cfa014679 Carpinus fangiana HOM05D001068 ORTHO05D002190 4.2e-44 181.8 150 57.3
Lalb_Chr03g0029731 Lupinus albus HOM05D001068 ORTHO05D002190 4.2e-44 181.8 159 54.7
COL.COLO4_04707 Corchorus olitorius HOM05D001068 ORTHO05D002190 5.4e-44 181.4 152 54.6
Potri.013G123500 Populus trichocarpa HOM05D001068 ORTHO05D002190 5.4e-44 181.4 150 59.3
RcHm_v2.0_Chr2g0128641 Rosa chinensis HOM05D001068 ORTHO05D002190 5.4e-44 181.4 143 58.0
VMungo1127G1906 Vigna mungo HOM05D001068 ORTHO05D002190 1.2e-43 180.3 142 56.3
Atru.chr6.2845 Acer truncatum HOM05D001068 ORTHO05D002190 1.6e-43 179.9 147 61.2
MD17G1234100 Malus domestica HOM05D001068 ORTHO05D002190 2.1e-43 179.5 143 57.3
Prupe.3G127000 Prunus persica HOM05D001068 ORTHO05D002190 2.1e-43 179.5 143 59.4
TWI59G1279 Tripterygium wilfordii HOM05D001068 ORTHO05D002190 2.1e-43 179.5 142 59.2
Gohir.A12G139700 Gossypium hirsutum HOM05D001068 ORTHO05D002190 2.7e-43 179.1 149 55.7
Gohir.D12G144200 Gossypium hirsutum HOM05D001068 ORTHO05D002190 2.7e-43 179.1 149 55.7
Gorai.008G155500 Gossypium raimondii HOM05D001068 ORTHO05D002190 2.7e-43 179.1 149 55.7
PGR142G0739 Punica granatum HOM05D001068 ORTHO05D002190 2.7e-43 179.1 142 58.5
Dinv02425 Davidia involucrata HOM05D001068 ORTHO05D002190 4.6e-43 178.3 143 62.2
Glyma.06G285400 Glycine max HOM05D001068 ORTHO05D002190 4.6e-43 178.3 150 56.7
TPR.G34856 Trifolium pratense HOM05D001068 ORTHO05D002190 6.0e-43 177.9 161 54.7
Haze_13278 Corylus avellana HOM05D001068 ORTHO05D002190 7.8e-43 177.6 150 56.0
Gohir.A03G153650 Gossypium hirsutum HOM05D001068 ORTHO05D002190 7.8e-43 177.6 145 57.2
Psat7g166960 Pisum sativum HOM05D001068 ORTHO05D002190 1.0e-42 177.2 161 54.0
CSS0000404 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 2.3e-42 176.0 144 58.3
MELO3C019320.2 Cucumis melo HOM05D001068 ORTHO05D002190 2.3e-42 176.0 143 57.3
CsaV3_2G034560 Cucumis sativus L. HOM05D001068 ORTHO05D002190 2.3e-42 176.0 143 57.3
Gorai.005G198300 Gossypium raimondii HOM05D001068 ORTHO05D002190 3.0e-42 175.6 144 56.9
Sabra13G0102500 Salix brachista HOM05D001068 ORTHO05D002190 3.0e-42 175.6 149 58.4
Glyma.12G120300 Glycine max HOM05D001068 ORTHO05D002190 3.9e-42 175.3 143 59.4
CANSAT64G0075 Cannabis sativa HOM05D001068 ORTHO05D002190 8.7e-42 174.1 148 54.7
Medtr4g079290 Medicago truncatula HOM05D001068 ORTHO05D002190 8.7e-42 174.1 160 54.4
Ca_18909_v3 Cicer arietinum L. HOM05D001068 ORTHO05D002190 1.1e-41 173.7 153 54.9
Manes.12G092800 Manihot esculenta HOM05D001068 ORTHO05D002190 2.5e-41 172.6 149 57.0
ClCG02G010170 Citrullus lanatus HOM05D001068 ORTHO05D002190 5.6e-41 171.4 143 54.5
PSO675G3167 Papaver somniferum HOM05D001068 ORTHO05D002190 5.6e-41 171.4 142 57.0
CSS0049947 Camellia sinensis var. sinensis HOM05D001068 ORTHO05D002190 9.6e-41 170.6 144 56.9
PSO541G4864 Papaver somniferum HOM05D001068 ORTHO05D002190 9.6e-41 170.6 142 57.0
Hma1.2p1_0002F.1_g002410 Hydrangea macrophylla HOM05D001068 ORTHO05D002190 1.2e-40 170.2 147 55.8
vmacro12355 Vaccinium macrocarpon HOM05D001068 ORTHO05D002190 1.2e-40 170.2 146 56.8
Sed0007318 Sechium edule HOM05D001068 ORTHO05D002190 1.6e-40 169.9 143 54.5
Lj3g0009326 Lotus japonicus HOM05D001068 ORTHO05D002190 2.8e-40 169.1 142 59.2
Cc05_g07930 Coffea canephora HOM05D001068 ORTHO05D002190 3.6e-40 168.7 144 58.3
Sabra19G0105800 Salix brachista HOM05D001068 ORTHO05D002190 3.6e-40 168.7 147 56.5
Sed0014357 Sechium edule HOM05D001068 ORTHO05D002190 3.6e-40 168.7 145 54.5
Peaxi162Scf00241g01211 Petunia axillaris HOM05D001068 ORTHO05D002190 4.7e-40 168.3 144 58.3
Lj8A106G57 Lonicera japonica HOM05D001068 ORTHO05D002190 6.2e-40 167.9 146 54.8
Oeu000573.1 Olea europaea HOM05D001068 ORTHO05D002190 6.2e-40 167.9 153 52.9
Rhsim06G0135500 Rhododendron simsii HOM05D001068 ORTHO05D002190 8.1e-40 167.5 146 54.1
Actinidia10988 Actinidia chinensis HOM05D001068 ORTHO05D002190 1.1e-39 167.2 152 52.6
CiPaw.03G183200 Carya illinoinensis HOM05D001068 ORTHO05D002190 1.1e-39 167.2 142 56.3
Eucgr.K01080 Eucalyptus grandis HOM05D001068 ORTHO05D002190 1.1e-39 167.2 148 55.4
Nitab4.5_0002196g0050 Nicotiana tabacum HOM05D001068 ORTHO05D002190 1.1e-39 167.2 144 58.3
Nitab4.5_0005651g0020 Nicotiana tabacum HOM05D001068 ORTHO05D002190 1.1e-39 167.2 144 56.2
Oeu000574.1 Olea europaea HOM05D001068 ORTHO05D002190 1.8e-39 166.4 142 54.9
Sc06g0009140 Simmondsia chinensis HOM05D001068 ORTHO05D002190 2.4e-39 166.0 151 55.0
Potri.019G092600 Populus trichocarpa HOM05D001068 ORTHO05D002190 4.0e-39 165.2 147 56.5
Aqoxy1G02246_Aqoxy1G02247 Aquilegia oxysepala HOM05D001068 ORTHO05D002190 6.9e-39 164.5 150 50.7
Oeu064840.1 Olea europaea HOM05D001068 ORTHO05D002190 9.0e-39 164.1 145 55.9
arahy.Tifrunner.gnm1.ann1.C7HVNL Arachis hypogaea HOM05D001068 ORTHO05D002190 4.4e-38 161.8 153 53.6
arahy.Tifrunner.gnm1.ann1.JX5WJ5 Arachis hypogaea HOM05D001068 ORTHO05D002190 4.4e-38 161.8 153 53.6
Migut.M00195 Erythranthe guttata HOM05D001068 ORTHO05D002190 7.6e-38 161.0 144 54.9
CDE08G0847 Ceratophyllum demersum HOM05D001068 ORTHO05D002190 9.9e-38 160.6 142 55.6
DCAR_010695 Daucus carota HOM05D001068 ORTHO05D002190 9.9e-38 160.6 143 57.3
SGA_v2.0_scaffold258G45790 Striga asiatica HOM05D001068 ORTHO05D002190 1.3e-37 160.2 148 54.7
Hund00993 Selenicereus undatus HOM05D001068 ORTHO05D002190 1.7e-37 159.8 141 56.0
CAN.G782.15 Capsicum annuum HOM05D001068 ORTHO05D002190 2.2e-37 159.5 145 54.5
PGSC0003DMG400010548 Solanum tuberosum HOM05D001068 ORTHO05D002190 8.4e-37 157.5 144 55.6
Sopen10g003980 Solanum pennellii HOM05D001068 ORTHO05D002190 1.1e-36 157.1 144 55.6
Solyc10g008110.4 Solanum lycopersicum HOM05D001068 ORTHO05D002190 1.9e-36 156.4 144 55.6
COL.COLO4_03961 Corchorus olitorius HOM05D001068 ORTHO05D002190 7.1e-36 154.5 162 48.8
SalBow7G1339 Salvia bowleyana HOM05D001068 ORTHO05D002190 7.1e-36 154.5 146 51.4
vmacro12356 Vaccinium macrocarpon HOM05D001068 ORTHO05D020229 1.2e-35 153.7 146 50.7
AUR62036086 Chenopodium quinoa HOM05D001068 ORTHO05D020229 3.5e-35 152.1 153 52.3
Hund07850 Selenicereus undatus HOM05D001068 ORTHO05D020229 3.5e-35 152.1 144 52.8
AUR62035386 Chenopodium quinoa HOM05D001068 ORTHO05D020229 2.3e-34 149.4 152 52.0
Ah.01g003900 Amaranthus hybridus HOM05D001068 ORTHO05D002190 5.1e-34 148.3 153 50.3
HPP92_027388 Vanilla planifolia HOM05D001068 ORTHO05D002190 5.1e-34 148.3 117 54.7
PGSC0003DMG400021853 Solanum tuberosum HOM05D001068 ORTHO05D002190 8.7e-34 147.5 153 49.7
DCAR_021268 Daucus carota HOM05D001068 ORTHO05D002190 1.9e-33 146.4 148 46.6
SEGI_12300 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 1.9e-33 146.4 143 49.0
SEGI_33260 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 1.9e-33 146.4 143 49.0
EL10Ac9g20848 Beta vulgaris HOM05D001068 ORTHO05D002190 5.6e-33 144.8 144 52.8
ATR0602G078 Amborella trichopoda HOM05D001068 ORTHO05D002190 1.6e-32 143.3 144 52.1
Os06g0354500 Oryza sativa ssp. japonica HOM05D001068 ORTHO05D002190 6.2e-32 141.4 146 49.3
SEGI_21730 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 4.0e-31 138.7 142 50.7
SMO266G0061 Selaginella moellendorffii HOM05D001068 ORTHO05D002190 2.2e-29 132.9 142 43.7
DCAR_009762 Daucus carota HOM05D001068 ORTHO05D002190 3.8e-29 132.1 123 51.2
Lsat_1_v5_gn_4_28520 Lactuca sativa HOM05D001068 ORTHO05D002190 3.8e-29 132.1 150 44.7
ECA234G0082 Erigeron canadensis HOM05D001068 ORTHO05D002190 6.4e-29 131.3 144 47.2
AUR62036085 Chenopodium quinoa HOM05D001068 ORTHO05D002190 1.4e-28 130.2 106 61.3
Zm00001eb148110 Zea mays HOM05D001068 ORTHO05D002190 1.4e-28 130.2 152 44.7
BcaC05g24280 Brassica carinata HOM05D001068 ORTHO05D002190 2.4e-28 129.4 96 70.8
HanXRQChr17g0565261 Helianthus annuus HOM05D001068 ORTHO05D002190 3.2e-28 129.0 144 45.8
Mapoly0007s0119 Marchantia polymorpha HOM05D001068 ORTHO05D002190 1.6e-27 126.7 148 44.6
HanXRQChr16g0526381 Helianthus annuus HOM05D001068 ORTHO05D002190 3.5e-27 125.6 144 45.1
AUR62035387 Chenopodium quinoa HOM05D001068 ORTHO05D002190 7.9e-27 124.4 105 57.1
ECA236G4578 Erigeron canadensis HOM05D001068 ORTHO05D002190 6.7e-26 121.3 144 43.1
Pp3c26_540 Physcomitrium patens HOM05D001068 ORTHO05D002190 1.1e-25 120.6 143 45.5
MBI07_g06445_MAGBIO Magnolia biondii HOM05D001068 ORTHO05D002190 4.3e-25 118.6 94 56.4
SEGI_29810 Sequoiadendron giganteum HOM05D001068 ORTHO05D002190 7.4e-25 117.9 97 58.8
Pp3c13_22370 Physcomitrium patens HOM05D001068 ORTHO05D002190 3.7e-24 115.5 143 44.1
AagrBONN_evm.TU.Sc2ySwM_362.999 Anthoceros agrestis HOM05D001068 ORTHO05D002190 1.5e-22 110.2 122 45.9
AUR62036084 Chenopodium quinoa HOM05D001068 ORTHO05D002190 1.9e-20 103.2 90 56.7
BcaB02g06786 Brassica carinata HOM05D001068 ORTHO05D002190 4.2e-20 102.1 55 83.6
HanXRQChr17g0565241 Helianthus annuus HOM05D001068 ORTHO05D002190 5.5e-20 101.7 105 49.5
Gorai.009G299600 Gossypium raimondii HOM05D001068 ORTHO05D002190 1.3e-18 97.1 77 61.0
Sp6g10250 Schrenkiella parvula HOM05D006837 ORTHO05D009407 4.3e-17 92.0 85 52.9
Actinidia11120 Actinidia chinensis HOM05D001068 ORTHO05D002190 6.9e-15 84.7 87 44.8
Medtr6g464330 Medicago truncatula HOM05D001068 ORTHO05D020229 1.7e-13 80.1 60 61.7
Lsat_1_v5_gn_4_28480 Lactuca sativa HOM05D001068 ORTHO05D002190 1.1e-09 67.4 82 46.3
Gohir.D05G284800 Gossypium hirsutum HOM05D001068 ORTHO05D002190 3.3e-09 65.9 50 62.0
Sed0001164 Sechium edule HOM05D001068 ORTHO05D002190 3.7e-08 62.4 47 55.3
FvH4_5g28500 Fragaria vesca HOM05D001068 ORTHO05D029604 1.1e-07 60.8 43 65.1
FAN14G5608 Fragaria x ananassa HOM05D001068 ORTHO05D029604 3.1e-07 59.3 43 62.8
FAN18G4470 Fragaria x ananassa HOM05D001068 ORTHO05D029604 3.1e-07 59.3 43 62.8
ECA234G1381 Erigeron canadensis HOM05D001068 ORTHO05D002190 3.4e-06 55.8 53 49.1
Medtr2g033680 Medicago truncatula HOM05D001068 ORTHO05D029604 3.4e-06 55.8 42 57.1


User provided reference genes

Program Settings