Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 1.9e-199 699.1 395 100.0
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 9.2e-186 653.7 394 93.1
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 9.2e-186 653.7 394 93.1
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 3.8e-155 552.0 409 79.2
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 8.4e-155 550.8 413 78.7
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 1.0e-144 517.3 408 77.7
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 2.2e-131 473.0 407 75.2
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 7.0e-117 424.9 415 67.5
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 1.0e-112 411.0 422 66.6
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 7.0e-109 398.3 428 64.7
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 2.5e-106 389.8 410 64.9
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 5.7e-87 325.5 430 54.9
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.2e-86 323.6 390 62.8
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.4e-85 320.9 411 56.7
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.2e-84 317.8 411 58.4
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 2.0e-84 317.0 404 55.7
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.0e-83 314.7 410 56.1
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 4.3e-82 309.3 415 58.6
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 1.6e-81 307.4 409 53.5
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 2.1e-81 307.0 408 53.7
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 2.1e-81 307.0 408 53.7
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 2.1e-81 307.0 408 53.7
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 6.1e-81 305.4 409 53.3
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 6.1e-81 305.4 409 53.3
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 7.5e-79 298.5 409 55.0
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 1.4e-77 294.3 411 52.6
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 1.4e-77 294.3 411 52.6
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 4.1e-77 292.7 421 55.1
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 7.0e-77 292.0 401 57.4
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.1e-73 280.4 419 53.0
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 3.0e-59 233.4 404 47.3
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.6e-58 229.2 409 45.7
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.6e-57 227.6 409 45.0
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 6.2e-57 225.7 353 48.4
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 2.4e-56 223.8 407 45.0
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.5e-55 221.1 398 43.5
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 2.6e-55 220.3 411 43.6
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 7.6e-55 218.8 410 43.4
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 4.9e-54 216.1 401 43.6
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 2.4e-53 213.8 393 42.7
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 1.2e-52 211.5 355 47.6
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 1.6e-52 211.1 396 43.2
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 7.8e-52 208.8 355 47.9
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 1.3e-51 208.0 371 44.5
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.7e-51 207.6 354 44.6
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 5.1e-51 206.1 399 43.1
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 5.1e-51 206.1 354 44.6
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 3.3e-50 203.4 354 42.4
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 1.2e-49 201.4 418 42.1
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 1.1e-48 198.4 394 42.1
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 4.0e-48 196.4 428 40.4
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 5.3e-48 196.1 368 41.3
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 5.3e-48 196.1 374 41.2
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 5.3e-48 196.1 403 41.2
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 9.0e-48 195.3 416 42.1
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.5e-47 194.5 319 51.4
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 1.5e-47 194.5 355 43.4
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 2.0e-47 194.1 349 42.7
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 4.4e-47 193.0 409 42.1
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.8e-47 192.6 400 41.5
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 7.6e-47 192.2 392 40.6
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 1.3e-46 191.4 355 41.4
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.3e-46 191.4 417 39.8
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 1.3e-46 191.4 383 43.1
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 3.8e-46 189.9 393 42.7
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 3.8e-46 189.9 353 42.5
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 4.9e-46 189.5 397 39.0
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 6.4e-46 189.1 410 39.5
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 6.4e-46 189.1 404 39.9
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 8.4e-46 188.7 407 41.3
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 8.4e-46 188.7 412 39.8
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 8.4e-46 188.7 352 43.2
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 1.9e-45 187.6 347 40.9
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 2.4e-45 187.2 426 41.8
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 2.4e-45 187.2 396 39.1
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 3.2e-45 186.8 365 43.3
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 4.2e-45 186.4 406 41.6
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 5.4e-45 186.0 360 44.2
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 5.4e-45 186.0 353 43.3
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 5.4e-45 186.0 406 41.1
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 7.1e-45 185.7 355 45.1
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 9.3e-45 185.3 392 42.9
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 9.3e-45 185.3 397 39.8
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 2.1e-44 184.1 399 41.6
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 2.7e-44 183.7 352 41.8
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 4.6e-44 183.0 354 40.7
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 4.6e-44 183.0 389 42.4
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 7.8e-44 182.2 397 39.3
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 1.3e-43 181.4 353 41.4
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 1.3e-43 181.4 392 39.3
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.3e-43 180.6 423 38.1
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 3.0e-43 180.3 420 38.1
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 3.9e-43 179.9 383 41.0
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 1.5e-42 177.9 391 39.9
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.9e-42 177.6 352 41.2
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.5e-42 177.2 398 41.2
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 4.3e-42 176.4 417 40.3
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 7.3e-42 175.6 417 40.0
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 3.6e-41 173.3 376 39.1
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 4.8e-41 172.9 401 41.1
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 6.2e-41 172.6 370 39.2
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 2.4e-40 170.6 370 40.0
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 2.4e-40 170.6 463 38.7
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 2.4e-40 170.6 388 39.2
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 3.1e-40 170.2 376 38.8
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 3.1e-40 170.2 418 42.8
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 3.4e-39 166.8 399 41.1
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 7.6e-39 165.6 356 41.9
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 1.3e-38 164.9 383 38.6
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 1.3e-38 164.9 371 39.9
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 8.4e-38 162.2 359 40.7
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.4e-37 161.4 341 37.5
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 5.4e-37 159.5 353 38.0
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 9.3e-37 158.7 394 37.3
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 4.6e-36 156.4 396 36.4
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 7.9e-36 155.6 357 39.5
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 1.3e-35 154.8 405 38.0
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.9e-35 153.3 296 41.6
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 7.4e-34 149.1 401 34.7
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.3e-33 148.3 182 52.2
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 8.1e-33 145.6 359 37.0
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 1.5e-31 141.4 379 37.5
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 4.5e-31 139.8 361 36.8
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 5.8e-31 139.4 150 57.3
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 5.8e-31 139.4 175 52.0
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 7.6e-31 139.0 362 35.9
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 2.9e-30 137.1 387 37.0
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 5.1e-27 126.3 424 29.5
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 6.7e-27 125.9 392 34.9
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 1.5e-26 124.8 346 35.8
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 9.6e-26 122.1 357 37.3
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 6.9e-24 115.9 284 38.7
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.5e-23 114.8 347 34.3
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 6.7e-19 99.4 364 31.3
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 3.3e-18 97.1 277 35.4
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 4.3e-18 96.7 376 32.7
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 9.7e-18 95.5 268 35.4
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 2.5e-13 80.9 149 38.9
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 5.7e-10 69.7 340 28.5
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 7.4e-10 69.3 214 36.0
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 4.5e-07 60.1 162 42.0


User provided reference genes

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