Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 0.0e+00 1173.3 825 100.0
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 2.6e-283 978.8 825 88.1
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 1.5e-275 953.0 825 81.6
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 6.3e-253 877.9 825 74.7
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 8.5e-141 505.4 862 51.2
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 8.5e-125 452.2 893 47.0
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 4.7e-115 419.9 865 51.2
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 2.2e-109 401.0 1060 43.8
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 5.9e-94 349.7 896 43.4
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 4.7e-91 340.1 840 41.9
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.1e-76 292.4 568 45.8
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 6.4e-72 276.6 833 37.3
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 3.5e-70 270.8 833 37.3
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 1.2e-67 262.3 323 53.9
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 4.0e-66 257.3 582 38.1
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 1.2e-65 255.8 451 50.1
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 4.9e-64 250.4 966 30.0
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 3.6e-59 234.2 308 51.3
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.1e-58 231.1 554 36.8
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 5.8e-57 226.9 571 41.5
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 4.9e-56 223.8 435 41.8
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 1.1e-55 222.6 573 34.9
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 9.3e-55 219.5 575 35.3
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 2.1e-54 218.4 641 36.2
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 1.5e-52 212.2 643 35.9
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 1.4e-50 205.7 566 34.6
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 5.3e-50 203.8 600 32.7
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 5.4e-47 193.7 606 31.8
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 7.1e-47 193.4 1051 27.8
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 7.9e-46 189.9 655 30.5
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 2.3e-45 188.3 963 31.3
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 3.9e-45 187.6 297 46.8
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 3.9e-45 187.6 602 34.1
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 3.9e-45 187.6 666 30.5
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 1.6e-43 182.2 1012 26.3
BcaC07g42136 Brassica carinata HOM05D003806 ORTHO05D004346 2.1e-43 181.8 324 42.9
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 2.1e-43 181.8 676 29.0
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 6.2e-43 180.3 606 30.5
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 1.1e-42 179.5 1015 31.8
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 1.4e-42 179.1 569 33.9
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 1.4e-42 179.1 569 33.9
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.8e-42 178.7 570 38.4
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 2.4e-42 178.3 645 29.9
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 7.6e-41 173.3 597 31.0
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 2.9e-40 171.4 656 34.0
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 3.8e-40 171.0 727 28.5
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 6.4e-40 170.2 339 38.9
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 8.4e-40 169.9 294 44.9
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 1.9e-39 168.7 888 34.7
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 2.4e-39 168.3 560 32.0
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 3.2e-39 167.9 699 29.0
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 2.1e-38 165.2 618 29.6
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 3.5e-38 164.5 603 29.7
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 4.6e-38 164.1 297 43.4
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 2.3e-37 161.8 341 38.1
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 8.7e-37 159.8 677 31.8
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 7.4e-36 156.8 914 27.5
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 4.8e-35 154.1 344 36.3
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 4.8e-35 154.1 597 32.7
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 6.2e-35 153.7 597 32.3
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 6.2e-35 153.7 603 29.2
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 4.0e-34 151.0 656 29.1
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 9.0e-34 149.8 627 31.1
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 2.0e-33 148.7 575 29.2
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 2.6e-33 148.3 704 26.7
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 1.3e-32 146.0 704 26.6
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.1e-31 142.9 657 29.7
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 1.4e-31 142.5 563 30.4
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 2.7e-30 138.3 333 33.0
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 4.6e-30 137.5 672 28.7
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 6.0e-30 137.1 603 27.0
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 1.8e-29 135.6 624 27.4
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 3.9e-29 134.4 603 26.9
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 9.7e-28 129.8 665 25.6
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 1.6e-27 129.0 699 25.3
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 4.8e-27 127.5 685 25.5
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 6.3e-27 127.1 606 28.4
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.8e-26 125.6 573 27.4
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 2.4e-26 125.2 655 27.6
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 3.1e-26 124.8 642 27.4
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 4.1e-26 124.4 645 26.0
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 1.5e-25 122.5 660 25.6
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 1.3e-24 119.4 601 27.6
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 1.9e-23 115.5 613 25.8
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 3.2e-23 114.8 601 26.1
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 4.2e-23 114.4 676 28.3
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 4.2e-23 114.4 569 26.0
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 5.5e-23 114.0 651 25.3
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.1e-22 112.1 595 26.1
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 4.6e-22 110.9 418 30.6
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 4.6e-22 110.9 644 25.2
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 7.9e-22 110.2 602 25.6
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 2.3e-21 108.6 466 31.1
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 3.0e-21 108.2 300 35.0
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 2.5e-20 105.1 1017 26.7
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 2.5e-20 105.1 270 35.2
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 9.7e-20 103.2 603 25.2
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.7e-19 102.4 200 42.5
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.7e-19 102.4 560 26.2
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 2.8e-19 101.7 603 24.9
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 6.3e-19 100.5 551 28.1
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 8.2e-19 100.1 268 34.7
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 8.2e-19 100.1 681 25.4
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.4e-18 99.4 439 26.7
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.4e-18 98.6 672 24.1
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 2.4e-18 98.6 453 28.9
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 5.9e-17 94.0 644 25.5
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 1.3e-16 92.8 533 26.5
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 1.7e-16 92.4 205 36.6
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 2.9e-16 91.7 720 28.1
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 3.8e-16 91.3 592 26.2
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 6.5e-16 90.5 720 25.7
BcaC09g49104 Brassica carinata HOM05D003806 ORTHO05D004346 6.5e-16 90.5 109 56.9
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.6e-14 85.9 533 30.8
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 4.7e-14 84.3 673 23.8
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 4.7e-14 84.3 673 23.8
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 2.3e-13 82.0 676 29.0
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 5.1e-13 80.9 613 24.5
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 2.6e-12 78.6 553 24.6
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.7e-11 75.9 1001 21.7
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 8.2e-11 73.6 623 25.2
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.1e-10 73.2 279 28.0
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.1e-10 73.2 279 28.0
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.1e-10 73.2 279 28.0
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 1.8e-10 72.4 322 29.5
C01p42510 Brassica napus HOM05D003806 ORTHO05D004346 1.8e-10 72.4 132 40.2
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 1.8e-10 72.4 470 25.5
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 3.1e-10 71.6 362 25.1
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 6.9e-10 70.5 86 46.5
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.2e-09 69.7 505 25.0
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.5e-09 69.3 159 36.5
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 3.4e-09 68.2 342 33.6
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 3.4e-09 68.2 576 31.4
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 1.0e-08 66.6 381 27.0
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 1.3e-08 66.2 999 26.5
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 1.7e-08 65.9 86 47.7
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 6.5e-08 63.9 618 24.9
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 8.5e-08 63.5 540 23.5
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 1.1e-07 63.2 612 22.7
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.2e-07 61.6 293 27.0
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 2.7e-06 58.5 320 32.2
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 6.1e-06 57.4 614 23.1
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 8.0e-06 57.0 410 24.6


User provided reference genes

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