Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29064H Brassica oleracea HOM05D006620 ORTHO05D008921 3.2e-270 934.5 465 100.0
C05p02810 Brassica napus HOM05D006620 ORTHO05D008921 2.5e-267 924.9 466 99.1
BraA10t42578Z Brassica rapa HOM05D006620 ORTHO05D008921 2.1e-266 921.8 465 98.5
Thhalv10007576m.g Eutrema salsugineum HOM05D006620 ORTHO05D008921 1.2e-261 906.0 465 96.8
Sp1g03450 Schrenkiella parvula HOM05D006620 ORTHO05D008921 1.5e-259 899.0 465 96.1
Carub.0001s0385 Capsella rubella HOM05D006620 ORTHO05D008921 6.2e-258 893.6 465 95.3
A10p03050 Brassica napus HOM05D006620 ORTHO05D008921 1.4e-257 892.5 465 95.9
AT1G04620 Arabidopsis thaliana HOM05D006620 ORTHO05D008921 2.0e-256 888.6 466 94.4
AL1G14300 Arabidopsis lyrata HOM05D006620 ORTHO05D008921 2.6e-256 888.3 465 94.4
CARHR003970 Cardamine hirsuta HOM05D006620 ORTHO05D008921 3.4e-256 887.9 464 95.3
SpUn0217_0010 Schrenkiella parvula HOM05D006620 ORTHO05D008921 3.7e-250 867.8 440 96.4
THA.LOC104801056 Tarenaya hassleriana HOM05D006620 ORTHO05D008921 2.1e-242 842.0 465 88.4
Atru.chr4.1848 Acer truncatum HOM05D006620 ORTHO05D008921 1.7e-226 789.3 453 83.4
Cpa.g.sc59.55 Carica papaya HOM05D006620 ORTHO05D008921 1.1e-225 786.6 465 81.7
Ciclev10004924m.g Citrus clementina HOM05D006620 ORTHO05D008921 4.1e-225 784.6 453 83.9
Thecc.04G218300 Theobroma cacao HOM05D006620 ORTHO05D008921 5.9e-224 780.8 462 79.9
GSVIVG01028992001 Vitis vinifera HOM05D006620 ORTHO05D008921 7.7e-224 780.4 457 82.3
TAR365G0583 Trochodendron aralioides HOM05D006620 ORTHO05D008921 1.0e-223 780.0 427 85.7
QL06p022330 Quercus lobata HOM05D006620 ORTHO05D008921 1.7e-223 779.2 466 80.9
CiPaw.02G103900 Carya illinoinensis HOM05D006620 ORTHO05D008921 2.2e-223 778.9 465 80.9
Gohir.A10G119800 Gossypium hirsutum HOM05D006620 ORTHO05D008921 3.8e-223 778.1 461 80.0
Sopen09g034080 Solanum pennellii HOM05D006620 ORTHO05D008921 8.5e-223 776.9 465 79.1
CAN.G812.44 Capsicum annuum HOM05D006620 ORTHO05D008921 1.1e-222 776.5 465 79.8
Manes.15G048100 Manihot esculenta HOM05D006620 ORTHO05D008921 2.5e-222 775.4 466 80.5
Gohir.D10G146800 Gossypium hirsutum HOM05D006620 ORTHO05D008921 9.4e-222 773.5 433 83.6
Glyma.10G128400 Glycine max HOM05D006620 ORTHO05D008921 1.2e-221 773.1 441 82.8
VMungo0720G1672 Vigna mungo HOM05D006620 ORTHO05D008921 1.2e-221 773.1 464 80.2
Cc03_g07000 Coffea canephora HOM05D006620 ORTHO05D008921 4.7e-221 771.2 454 80.8
Lj6g0024353 Lotus japonicus HOM05D006620 ORTHO05D008921 4.7e-221 771.2 447 81.7
ClCG05G003790 Citrullus lanatus HOM05D006620 ORTHO05D008921 1.4e-220 769.6 450 82.0
RcHm_v2.0_Chr4g0396281 Rosa chinensis HOM05D006620 ORTHO05D008921 1.4e-220 769.6 461 81.6
CANSAT78G1778 Cannabis sativa HOM05D006620 ORTHO05D008921 1.8e-220 769.2 461 80.3
FvH4_4g05310 Fragaria vesca HOM05D006620 ORTHO05D008921 1.8e-220 769.2 429 84.6
SalBow2G2385 Salvia bowleyana HOM05D006620 ORTHO05D008921 1.8e-220 769.2 429 83.9
FAN17G2880 Fragaria x ananassa HOM05D006620 ORTHO05D008921 2.3e-220 768.8 451 82.3
Aqoxy5G00083 Aquilegia oxysepala HOM05D006620 ORTHO05D008921 3.0e-220 768.5 448 80.6
FAN12G0711 Fragaria x ananassa HOM05D006620 ORTHO05D008921 3.9e-220 768.1 452 82.1
Sed0017900 Sechium edule HOM05D006620 ORTHO05D008921 3.9e-220 768.1 438 82.9
Actinidia25091 Actinidia chinensis HOM05D006620 ORTHO05D008921 5.1e-220 767.7 465 80.2
CsaV3_3G011480 Cucumis sativus L. HOM05D006620 ORTHO05D008921 1.1e-219 766.5 438 82.4
Duzib151G1212 Durio zibethinus HOM05D006620 ORTHO05D008921 1.5e-219 766.1 461 79.0
Nn1g03061 Nelumbo nucifera HOM05D006620 ORTHO05D008921 1.5e-219 766.1 465 79.4
CSS0026751 Camellia sinensis var. sinensis HOM05D006620 ORTHO05D008921 2.6e-219 765.4 468 79.9
Oeu024839.2 Olea europaea HOM05D006620 ORTHO05D008921 2.6e-219 765.4 458 80.1
MELO3C006358.2 Cucumis melo HOM05D006620 ORTHO05D008921 3.3e-219 765.0 438 81.7
Lalb_Chr01g0011271 Lupinus albus HOM05D006620 ORTHO05D008921 3.3e-219 765.0 457 80.1
PSO764G0126 Papaver somniferum HOM05D006620 ORTHO05D008921 4.4e-219 764.6 429 84.1
Phvul.007G238800 Phaseolus vulgaris HOM05D006620 ORTHO05D008921 4.4e-219 764.6 440 82.7
PGR142G1067 Punica granatum HOM05D006620 ORTHO05D008921 4.4e-219 764.6 430 84.0
TWI53G1958 Tripterygium wilfordii HOM05D006620 ORTHO05D008921 4.4e-219 764.6 458 79.7
DCAR_002286 Daucus carota HOM05D006620 ORTHO05D008921 3.7e-218 761.5 485 76.5
arahy.Tifrunner.gnm1.ann1.8GH2US Arachis hypogaea HOM05D006620 ORTHO05D008921 4.8e-218 761.1 430 83.3
Dinv29777 Davidia involucrata HOM05D006620 ORTHO05D008921 4.8e-218 761.1 427 83.4
Medtr1g046250 Medicago truncatula HOM05D006620 ORTHO05D008921 1.8e-217 759.2 424 84.0
Hma1.2p1_1241F.1_g269780 Hydrangea macrophylla HOM05D006620 ORTHO05D008921 7.0e-217 757.3 426 83.1
FAN07G1877 Fragaria x ananassa HOM05D006620 ORTHO05D008921 1.2e-216 756.5 428 84.1
MD13G1227100 Malus domestica HOM05D006620 ORTHO05D008921 1.5e-216 756.1 464 78.7
Migut.G00599 Erythranthe guttata HOM05D006620 ORTHO05D008921 2.6e-216 755.4 452 79.2
Lsat_1_v5_gn_6_61660 Lactuca sativa HOM05D006620 ORTHO05D008921 2.6e-216 755.4 427 83.1
Gorai.011G164100 Gossypium raimondii HOM05D006620 ORTHO05D008921 3.5e-216 755.0 461 78.7
Potri.010G062300 Populus trichocarpa HOM05D006620 ORTHO05D008921 3.5e-216 755.0 424 84.0
HanXRQChr07g0185841 Helianthus annuus HOM05D006620 ORTHO05D008921 1.0e-215 753.4 457 78.8
Prupe.1G054600 Prunus persica HOM05D006620 ORTHO05D008921 2.2e-215 752.3 429 82.5
SGA_v2.0_scaffold57G20185 Striga asiatica HOM05D006620 ORTHO05D008921 2.2e-215 752.3 441 80.0
TPR.G24008 Trifolium pratense HOM05D006620 ORTHO05D008921 2.9e-215 751.9 424 83.7
PSO832G4215 Papaver somniferum HOM05D006620 ORTHO05D008921 6.5e-215 750.7 464 79.3
arahy.Tifrunner.gnm1.ann1.68MQ8I Arachis hypogaea HOM05D006620 ORTHO05D008921 4.2e-214 748.0 483 76.0
CDE09G0604 Ceratophyllum demersum HOM05D006620 ORTHO05D008921 4.7e-213 744.6 421 82.2
ATR0787G041 Amborella trichopoda HOM05D006620 ORTHO05D008921 1.4e-212 743.0 460 78.0
ECA233G0386 Erigeron canadensis HOM05D006620 ORTHO05D008921 3.9e-212 741.5 415 83.4
HPP92_009009 Vanilla planifolia HOM05D006620 ORTHO05D008921 2.8e-210 735.3 455 77.6
unitig_899.g14858 Utricularia gibba HOM05D006620 ORTHO05D008921 2.4e-209 732.3 476 74.8
AUR62043860 Chenopodium quinoa HOM05D006620 ORTHO05D008921 3.1e-209 731.9 458 75.8
COL.COLO4_34324 Corchorus olitorius HOM05D006620 ORTHO05D008921 5.0e-207 724.5 474 74.7
Zm00001eb038650 Zea mays HOM05D006620 ORTHO05D008921 5.0e-207 724.5 427 79.6
Lj3A630T51 Lonicera japonica HOM05D006620 ORTHO05D008921 9.4e-206 720.3 427 80.6
Ah.04g153440 Amaranthus hybridus HOM05D006620 ORTHO05D008921 1.8e-204 716.1 426 79.3
SEGI_36405 Sequoiadendron giganteum HOM05D006620 ORTHO05D008921 1.8e-204 716.1 429 78.1
MBI07_g21064_MAGBIO Magnolia biondii HOM05D006620 ORTHO05D008921 5.2e-204 714.5 401 83.5
Peaxi162Scf00125g00710 Petunia axillaris HOM05D006620 ORTHO05D008921 4.4e-203 711.4 401 83.8
Pp3c2_21860 Physcomitrium patens HOM05D006620 ORTHO05D008921 1.8e-201 706.1 418 79.7
Aa31LG1G20250 Aethionema arabicum HOM05D006620 ORTHO05D008921 2.4e-201 705.7 387 89.7
AagrBONN_evm.TU.Sc2ySwM_228.367 Anthoceros agrestis HOM05D006620 ORTHO05D008921 9.1e-201 703.7 426 77.0
Hund19263 Selenicereus undatus HOM05D006620 ORTHO05D008921 2.2e-199 699.1 425 77.9
FAN22G0814 Fragaria x ananassa HOM05D006620 ORTHO05D008921 8.5e-199 697.2 478 73.4
Mapoly0088s0008 Marchantia polymorpha HOM05D006620 ORTHO05D008921 7.2e-198 694.1 456 72.4
vmacro00524 Vaccinium macrocarpon HOM05D006620 ORTHO05D008921 7.2e-198 694.1 492 70.7
AUR62035902 Chenopodium quinoa HOM05D006620 ORTHO05D008921 1.7e-194 682.9 447 73.8
Rhsim09G0044600 Rhododendron simsii HOM05D006620 ORTHO05D008921 1.2e-192 676.8 451 72.9
Solyc09g091100.4 Solanum lycopersicum HOM05D006620 ORTHO05D008921 1.3e-191 673.3 382 83.5
Cfa014839 Carpinus fangiana HOM05D006620 ORTHO05D008921 2.1e-189 666.0 404 80.7
Nitab4.5_0003287g0030 Nicotiana tabacum HOM05D006620 ORTHO05D008921 3.0e-188 662.1 495 67.9
EL10Ac3g06742 Beta vulgaris HOM05D006620 ORTHO05D008921 4.9e-186 654.8 459 69.9
Sc25g0004890 Simmondsia chinensis HOM05D006620 ORTHO05D008921 3.2e-185 652.1 396 78.5
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 2.3e-183 646.0 565 60.7
CBR_g51515 Chara braunii HOM05D006620 ORTHO05D008921 8.3e-178 627.5 421 70.1
Glyma.20G079901 Glycine max HOM05D006620 ORTHO05D008921 8.6e-175 617.5 357 81.5
AUR62035337 Chenopodium quinoa HOM05D006620 ORTHO05D008921 2.3e-172 609.4 431 69.8
MCO15G577 Micromonas commoda HOM05D006620 ORTHO05D008921 1.2e-165 587.0 443 62.8
Cre11.g468700 Chlamydomonas reinhardtii HOM05D006620 ORTHO05D008921 1.5e-163 580.1 426 65.0
Ca_11784_v3 Cicer arietinum L. HOM05D006620 ORTHO05D008921 2.1e-160 569.7 377 74.8
Cc03_g06790 Coffea canephora HOM05D006620 ORTHO05D008921 3.5e-152 542.3 487 60.2
Os04g0320100 Oryza sativa ssp. japonica HOM05D006620 ORTHO05D008921 2.4e-137 493.0 272 84.9
Haze_11525 Corylus avellana HOM05D006620 ORTHO05D008921 1.2e-136 490.7 271 85.6
PRCOL_00000047 Prasinoderma coloniale HOM05D006620 ORTHO05D008921 3.3e-134 482.6 374 61.0
Psat6g109520 Pisum sativum HOM05D006620 ORTHO05D008921 9.6e-134 481.1 272 83.8
Nitab4.5_0000451g0130 Nicotiana tabacum HOM05D006620 ORTHO05D008921 1.1e-132 477.6 465 55.1
Eucgr.H00112 Eucalyptus grandis HOM05D006620 ORTHO05D008921 7.7e-115 418.3 244 81.6
PGSC0003DMG401011586 Solanum tuberosum HOM05D006620 ORTHO05D008921 2.3e-66 257.3 147 81.6
Prupe.1G054400 Prunus persica HOM05D006620 ORTHO05D008921 1.6e-59 234.6 190 62.6
SEGI_09547 Sequoiadendron giganteum HOM05D006620 ORTHO05D008921 1.9e-57 227.6 147 71.4
Hma1.2p1_1241F.1_g269765 Hydrangea macrophylla HOM05D006620 ORTHO05D008921 2.9e-37 160.6 102 69.6
SEGI_19589 Sequoiadendron giganteum HOM05D006620 ORTHO05D025789 7.1e-28 129.4 79 74.7
Actinidia35928 Actinidia chinensis HOM05D006620 ORTHO05D000073 1.8e-23 114.8 84 65.5
Ca_17765_v3 Cicer arietinum L. HOM05D006620 ORTHO05D044367 7.9e-19 99.4 57 80.7
COL.COLO4_07239 Corchorus olitorius HOM05D006620 ORTHO05D044367 2.8e-16 90.9 57 78.9
MBI11_g39495_MAGBIO Magnolia biondii HOM05D006620 ORTHO05D025789 5.5e-12 76.6 49 71.4
MBI15_g44046_MAGBIO Magnolia biondii HOM05D006620 ORTHO05D025789 5.5e-12 76.6 42 81.0
MBI12_g00604_MAGBIO Magnolia biondii HOM05D006620 ORTHO05D025789 4.6e-11 73.6 42 76.2
MELO3C028457.2 Cucumis melo HOM05D006620 ORTHO05D167913 1.8e-07 61.6 40 72.5


User provided reference genes

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