Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 4.8e-154 547.7 265 100.0
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 2.3e-148 528.9 265 98.1
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 2.3e-148 528.9 265 98.1
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 9.0e-145 516.9 265 95.1
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 6.5e-143 510.8 265 94.3
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 7.4e-139 497.3 265 92.1
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 3.8e-135 485.0 265 90.2
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 1.9e-134 482.6 265 89.1
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 3.3e-131 471.9 263 88.2
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 2.8e-130 468.8 263 88.2
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 2.8e-130 468.8 263 88.2
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 1.1e-129 466.8 263 87.8
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 5.3e-129 464.5 263 87.5
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 3.4e-128 461.8 263 85.9
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.4e-124 449.9 256 85.5
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 6.7e-124 447.6 258 83.7
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 1.1e-121 440.3 256 83.6
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 2.4e-121 439.1 261 82.4
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 9.1e-121 437.2 256 83.2
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.5e-120 436.4 258 83.7
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 3.2e-118 428.7 264 82.6
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 8.8e-116 420.6 259 78.4
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 8.0e-109 397.5 258 71.7
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 4.4e-107 391.7 261 69.3
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 4.4e-107 391.7 261 69.3
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 7.5e-107 391.0 258 71.3
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 9.7e-107 390.6 271 70.1
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 3.7e-106 388.7 258 72.5
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 8.3e-106 387.5 265 69.1
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.1e-105 387.1 256 70.7
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 1.4e-105 386.7 259 72.2
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 3.1e-105 385.6 260 70.4
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 4.1e-105 385.2 255 70.6
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 7.0e-105 384.4 259 71.0
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 7.0e-105 384.4 258 70.5
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 9.1e-105 384.0 263 69.6
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 2.7e-104 382.5 259 70.7
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 2.7e-104 382.5 268 68.7
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 7.7e-104 380.9 258 70.5
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 7.7e-104 380.9 256 69.9
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 1.0e-103 380.6 277 67.1
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.0e-103 380.6 259 70.3
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 1.7e-103 379.8 259 70.7
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 1.7e-103 379.8 256 69.9
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 2.2e-103 379.4 258 69.8
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 2.9e-103 379.0 258 69.4
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 3.8e-103 378.6 259 68.3
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 5.0e-103 378.3 261 69.7
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 6.5e-103 377.9 258 70.2
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 6.5e-103 377.9 258 69.0
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 1.9e-102 376.3 260 68.8
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 1.9e-102 376.3 259 68.3
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 5.5e-102 374.8 260 68.1
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 7.2e-102 374.4 258 70.5
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 1.2e-101 373.6 258 67.8
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 2.1e-101 372.9 261 67.4
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 2.7e-101 372.5 267 67.4
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 6.1e-101 371.3 258 68.2
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 8.0e-101 370.9 258 70.2
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 1.0e-100 370.5 258 68.6
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.0e-100 370.5 258 68.2
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 1.4e-100 370.2 267 66.7
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 2.3e-100 369.4 258 67.1
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 2.3e-100 369.4 258 69.4
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 3.0e-100 369.0 262 66.8
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.0e-100 368.6 258 68.2
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 4.0e-100 368.6 258 67.8
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 8.8e-100 367.5 258 68.2
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 1.2e-99 367.1 259 66.8
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 1.2e-99 367.1 258 69.0
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 1.5e-99 366.7 260 68.5
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 2.0e-99 366.3 257 66.9
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 2.6e-99 365.9 275 65.1
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 1.3e-98 363.6 261 66.7
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 3.7e-98 362.1 253 68.8
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 6.3e-98 361.3 258 65.9
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 6.3e-98 361.3 269 63.9
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 8.3e-98 360.9 258 65.9
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 1.4e-97 360.1 254 67.7
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 2.4e-97 359.4 258 64.7
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 2.4e-97 359.4 259 65.6
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 5.4e-97 358.2 291 61.2
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 9.1e-97 357.5 264 67.4
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 9.1e-97 357.5 261 65.5
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 1.2e-96 357.1 269 65.4
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 1.6e-96 356.7 256 67.6
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 5.9e-96 354.8 267 64.4
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 7.7e-96 354.4 260 63.5
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.0e-95 354.0 259 65.6
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 2.9e-95 352.4 254 66.1
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 6.6e-95 351.3 271 63.1
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 6.6e-95 351.3 264 64.0
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.1e-94 350.5 257 65.4
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 1.1e-94 350.5 264 63.3
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 1.1e-94 350.5 267 61.0
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 3.3e-94 349.0 258 67.4
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 1.6e-93 346.7 258 68.6
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 4.7e-93 345.1 318 55.0
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 8.0e-93 344.4 262 61.8
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 1.8e-92 343.2 256 61.7
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 8.9e-92 340.9 256 63.7
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 1.2e-91 340.5 269 61.0
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 2.6e-91 339.3 261 65.9
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 3.4e-91 339.0 256 64.1
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 4.4e-91 338.6 255 63.1
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 2.2e-90 336.3 259 63.7
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 8.3e-90 334.3 259 62.2
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 2.4e-89 332.8 215 71.6
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 3.1e-89 332.4 258 61.6
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 3.1e-89 332.4 261 60.2
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 5.4e-89 331.6 239 68.2
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 7.0e-89 331.3 216 71.8
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 9.2e-89 330.9 219 71.2
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 1.0e-84 317.4 273 56.8
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 3.4e-83 312.4 219 68.5
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 2.9e-82 309.3 214 70.1
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 6.4e-82 308.1 219 66.2
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 2.4e-81 306.2 238 63.4
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 2.0e-80 303.1 246 58.9
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 1.9e-78 296.6 198 71.2
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 4.3e-78 295.4 198 72.2
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 6.2e-77 291.6 234 58.1
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 5.2e-76 288.5 196 71.4
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 5.2e-76 288.5 237 57.0
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 5.2e-76 288.5 198 68.7
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 1.2e-75 287.3 207 67.6
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.5e-75 287.0 198 68.2
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 1.1e-73 280.8 258 53.5
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 1.6e-72 276.9 179 72.6
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 1.2e-69 267.3 263 51.3
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 8.1e-69 264.6 307 47.9
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 4.4e-67 258.8 170 73.5
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 9.9e-67 257.7 228 57.9
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 7.1e-65 251.5 361 42.7
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.1e-60 236.1 233 51.1
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 9.9e-59 231.1 186 61.3
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.9e-57 226.9 271 49.1
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.2e-56 224.2 155 64.5
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 3.9e-55 219.2 136 79.4
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.1e-53 213.4 181 55.2
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 5.8e-51 205.3 209 51.2
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 2.3e-47 193.4 178 55.1
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.1e-44 184.5 132 67.4
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 4.5e-43 179.1 144 60.4
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.9e-41 173.7 132 65.2
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 2.1e-40 170.2 262 34.7
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 1.3e-39 167.5 326 33.4
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.5e-35 154.1 104 67.3
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 1.0e-34 151.4 92 72.8
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 4.9e-34 149.1 280 35.4
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.3e-30 136.3 202 39.6
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.8e-29 133.3 130 54.6
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 2.0e-27 127.1 102 57.8
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 2.6e-27 126.7 168 41.1
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 1.1e-25 121.3 167 46.7
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 2.2e-21 107.1 55 92.7
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 2.2e-21 107.1 76 63.2
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 2.2e-18 97.1 52 88.5
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 2.2e-18 97.1 52 88.5
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.9e-17 94.0 80 61.2
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.2e-17 92.8 108 42.6
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 3.6e-16 89.7 72 61.1
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 9.1e-12 75.1 60 58.3
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 2.6e-11 73.6 49 61.2
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 2.5e-09 67.0 36 91.7
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.4e-07 61.2 40 60.0
Duzib133G1297 Durio zibethinus HOM05D004412 ORTHO05D005316 3.3e-06 56.6 37 59.5


User provided reference genes

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