Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 5.3e-221 770.8 402 100.0
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 1.5e-204 716.1 413 92.3
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 6.1e-193 677.6 400 91.8
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 7.4e-191 670.6 405 89.9
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 2.1e-161 572.8 420 76.9
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 1.2e-148 530.4 423 72.6
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 2.3e-136 489.6 460 63.3
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 5.2e-136 488.4 457 63.0
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 2.9e-134 482.6 460 62.2
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 8.9e-128 461.1 466 61.2
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 9.9e-119 431.0 467 57.0
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 1.4e-117 427.2 467 57.0
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 1.3e-115 420.6 444 56.3
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 2.6e-111 406.4 410 61.5
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 4.0e-104 382.5 449 53.0
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 1.1e-101 374.4 429 55.2
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 5.4e-101 372.1 444 53.4
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 2.5e-98 363.2 439 53.5
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 1.8e-96 357.1 473 51.0
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 2.8e-65 253.4 431 42.5
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 5.9e-63 245.7 464 38.8
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.2e-62 243.8 464 38.6
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 6.5e-62 242.3 431 41.1
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 7.2e-61 238.8 437 40.0
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 9.4e-61 238.4 429 40.3
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 4.7e-60 236.1 437 39.8
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 1.8e-59 234.2 433 39.5
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 2.6e-58 230.3 436 39.7
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.3e-58 229.9 455 37.8
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 5.7e-58 229.2 391 42.2
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.3e-57 228.0 434 40.1
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.7e-57 227.6 453 37.1
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.7e-57 227.6 456 38.4
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 8.2e-57 225.3 443 38.1
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.4e-56 224.6 432 38.0
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 4.1e-56 223.0 441 38.8
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 1.6e-55 221.1 435 39.3
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 3.5e-55 219.9 467 37.5
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 8.5e-54 215.3 435 38.2
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 1.5e-53 214.5 401 39.4
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 1.4e-51 208.0 447 36.7
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 3.0e-51 206.8 437 35.7
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 1.5e-50 204.5 430 38.1
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 4.4e-50 203.0 445 36.6
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 9.7e-50 201.8 443 36.3
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 1.7e-49 201.1 442 33.9
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 1.7e-49 201.1 406 36.7
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 4.8e-49 199.5 434 36.2
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 6.3e-49 199.1 440 33.4
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 1.1e-48 198.4 366 38.5
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 2.4e-48 197.2 404 37.6
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 5.3e-48 196.1 272 45.6
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 1.2e-47 194.9 429 34.0
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 1.0e-46 191.8 401 37.7
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 1.7e-46 191.0 434 34.8
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 8.5e-46 188.7 482 32.0
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 1.5e-45 188.0 434 34.3
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 1.9e-45 187.6 482 31.7
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 4.2e-45 186.4 419 34.1
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 2.7e-44 183.7 428 34.1
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 4.7e-44 183.0 452 33.6
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 6.1e-44 182.6 408 33.6
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 1.0e-43 181.8 441 35.4
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 2.3e-43 180.6 433 34.4
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 2.3e-43 180.6 432 34.0
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 1.5e-42 177.9 445 32.6
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 1.5e-42 177.9 430 33.3
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 4.4e-42 176.4 486 30.5
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 4.8e-41 172.9 389 33.4
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 1.4e-40 171.4 424 34.4
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 9.1e-40 168.7 256 41.8
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 1.7e-38 164.5 423 31.2
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 2.9e-38 163.7 443 34.3
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 6.5e-38 162.5 247 42.5
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 8.6e-38 162.2 412 31.8
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 8.6e-38 162.2 437 33.6
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 8.6e-38 162.2 400 34.5
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 8.6e-38 162.2 401 33.4
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 1.1e-37 161.8 408 32.6
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 9.5e-37 158.7 208 49.5
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 2.1e-36 157.5 252 41.3
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 1.0e-35 155.2 416 31.7
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 1.0e-35 155.2 442 31.2
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 1.8e-35 154.5 391 32.7
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 2.3e-35 154.1 381 34.4
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 4.0e-35 153.3 306 37.9
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 5.2e-35 152.9 361 31.9
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 5.2e-35 152.9 313 36.7
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 2.2e-33 147.5 235 40.9
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 2.8e-33 147.1 243 43.6
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 1.4e-32 144.8 392 31.1
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 1.8e-32 144.4 456 27.9
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 4.1e-32 143.3 434 32.3
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.2e-31 141.7 339 31.9
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 4.5e-31 139.8 251 37.5
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.3e-30 138.3 260 36.2
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 3.3e-29 133.7 269 37.5
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.3e-29 133.7 267 37.1
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.2e-26 125.2 368 30.4
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 9.8e-26 122.1 281 34.2
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 2.2e-25 120.9 415 28.4
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 3.7e-25 120.2 254 35.8
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 4.9e-25 119.8 357 29.7
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 1.4e-24 118.2 437 28.8
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 2.0e-23 114.4 434 28.1
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 3.5e-23 113.6 190 42.1
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 7.8e-23 112.5 399 30.8
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 5.2e-19 99.8 348 27.0
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.7e-17 94.7 338 29.6
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 6.4e-17 92.8 296 31.8
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.9e-16 91.3 261 30.7
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 2.4e-16 90.9 120 42.5
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 5.4e-16 89.7 211 36.0
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 5.4e-16 89.7 294 29.3
BcaB08g36158 Brassica carinata HOM05D005648 ORTHO05D039826 5.0e-14 83.2 132 42.4
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 3.3e-13 80.5 116 47.4
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 5.6e-13 79.7 140 34.3
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 1.6e-12 78.2 256 31.2
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.9e-09 67.4 122 39.3
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 4.9e-09 66.6 109 40.4
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 1.1e-08 65.5 82 45.1
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 6.0e-07 59.7 146 34.2
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 1.0e-06 58.9 62 50.0
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 3.0e-06 57.4 152 30.9
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 8.6e-06 55.8 118 31.4


User provided reference genes

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