Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t28794H Brassica oleracea HOM05D004227 ORTHO05D005027 1.5e-86 322.8 157 100.0
BcaB03g13634 Brassica carinata HOM05D004227 ORTHO05D005027 1.3e-79 299.7 157 94.9
C05p00070 Brassica napus HOM05D004227 ORTHO05D005027 1.3e-79 299.7 157 94.9
A10p00100 Brassica napus HOM05D004227 ORTHO05D005027 7.4e-78 293.9 157 93.6
BraA10t42288Z Brassica rapa HOM05D004227 ORTHO05D005027 7.4e-78 293.9 157 93.6
BcaC07g42439 Brassica carinata HOM05D004227 ORTHO05D005027 2.1e-77 292.4 156 93.6
BolC8t52927H Brassica oleracea HOM05D004227 ORTHO05D005027 2.1e-77 292.4 156 93.6
BcaC07g42337 Brassica carinata HOM05D004227 ORTHO05D005027 6.2e-77 290.8 156 92.9
Thhalv10009013m.g Eutrema salsugineum HOM05D004227 ORTHO05D005027 4.9e-74 281.2 156 89.7
PSO063G7112 Papaver somniferum HOM05D004227 ORTHO05D005027 3.2e-73 278.5 156 88.5
PSO782G5116 Papaver somniferum HOM05D004227 ORTHO05D005027 3.2e-73 278.5 156 88.5
Carub.0001s0001 Capsella rubella HOM05D004227 ORTHO05D005027 9.3e-73 276.9 156 89.7
THA.LOC104816996 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 9.3e-73 276.9 157 88.5
AL1G10090 Arabidopsis lyrata HOM05D004227 ORTHO05D005027 1.2e-72 276.6 156 88.5
Duzib138G0704 Durio zibethinus HOM05D004227 ORTHO05D005027 1.2e-72 276.6 156 87.8
Gohir.A08G057900 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.2e-72 276.6 156 87.8
Gohir.D08G067200 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.2e-72 276.6 156 87.8
Gorai.004G069800 Gossypium raimondii HOM05D004227 ORTHO05D005027 1.2e-72 276.6 156 87.8
Thecc.01G396100 Theobroma cacao HOM05D004227 ORTHO05D005027 1.2e-72 276.6 156 87.8
Duzib133G0083 Durio zibethinus HOM05D004227 ORTHO05D005027 1.6e-72 276.2 156 87.8
THA.LOC104801496 Tarenaya hassleriana HOM05D004227 ORTHO05D005027 2.1e-72 275.8 152 90.8
Ciclev10022690m.g Citrus clementina HOM05D004227 ORTHO05D005027 2.7e-72 275.4 156 87.8
Gohir.A11G075100 Gossypium hirsutum HOM05D004227 ORTHO05D005027 2.7e-72 275.4 156 87.2
Gorai.007G085400 Gossypium raimondii HOM05D004227 ORTHO05D005027 2.7e-72 275.4 156 87.2
Manes.05G055700 Manihot esculenta HOM05D004227 ORTHO05D005027 2.7e-72 275.4 155 88.4
COL.COLO4_12397 Corchorus olitorius HOM05D004227 ORTHO05D005027 3.5e-72 275.0 156 87.8
TAR636G2330 Trochodendron aralioides HOM05D004227 ORTHO05D005027 3.5e-72 275.0 156 87.2
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla HOM05D004227 ORTHO05D005027 4.6e-72 274.6 156 87.2
TWI59G0764 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 4.6e-72 274.6 156 86.5
VMungo0331G1366 Vigna mungo HOM05D004227 ORTHO05D005027 4.6e-72 274.6 156 87.2
AT1G02140 Arabidopsis thaliana HOM05D004227 ORTHO05D005027 6.0e-72 274.2 156 87.8
Cpa.g.sc22.26 Carica papaya HOM05D004227 ORTHO05D005027 6.0e-72 274.2 156 87.8
CDE06G1820 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 7.9e-72 273.9 157 86.0
CDE06G1835 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 7.9e-72 273.9 157 86.0
Hund24961 Selenicereus undatus HOM05D004227 ORTHO05D005027 7.9e-72 273.9 156 87.2
AUR62014174 Chenopodium quinoa HOM05D004227 ORTHO05D005027 1.0e-71 273.5 156 87.2
Lj3g0012613 Lotus japonicus HOM05D004227 ORTHO05D005027 1.0e-71 273.5 156 86.5
Nn1g00815 Nelumbo nucifera HOM05D004227 ORTHO05D005027 1.0e-71 273.5 156 87.2
Phvul.010G046900 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.0e-71 273.5 156 86.5
Potri.014G049700 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.0e-71 273.5 158 87.3
CSS0010737 Camellia sinensis var. sinensis HOM05D004227 ORTHO05D005027 1.3e-71 273.1 158 87.3
Dinv43609 Davidia involucrata HOM05D004227 ORTHO05D005027 1.3e-71 273.1 156 86.5
Gohir.D11G079800 Gossypium hirsutum HOM05D004227 ORTHO05D005027 1.3e-71 273.1 156 85.9
SGA_v2.0_scaffold44G16581 Striga asiatica HOM05D004227 ORTHO05D005027 1.3e-71 273.1 157 86.0
TWI23G1276 Tripterygium wilfordii HOM05D004227 ORTHO05D005027 1.3e-71 273.1 156 86.5
Ah.01g017970 Amaranthus hybridus HOM05D004227 ORTHO05D005027 1.8e-71 272.7 156 85.9
EL10Ac6g14165 Beta vulgaris HOM05D004227 ORTHO05D005027 2.3e-71 272.3 156 86.5
Migut.F00534 Erythranthe guttata HOM05D004227 ORTHO05D005027 2.3e-71 272.3 156 86.5
Glyma.07G115700 Glycine max HOM05D004227 ORTHO05D005027 2.3e-71 272.3 156 86.5
Nitab4.5_0002153g0060 Nicotiana tabacum HOM05D004227 ORTHO05D005027 2.3e-71 272.3 157 86.0
Solyc03g093680.4 Solanum lycopersicum HOM05D004227 ORTHO05D005027 3.0e-71 271.9 157 85.4
Sopen03g024580 Solanum pennellii HOM05D004227 ORTHO05D005027 3.0e-71 271.9 157 85.4
CARHR000190 Cardamine hirsuta HOM05D004227 ORTHO05D005027 3.9e-71 271.6 156 87.8
Ca_15636_v3 Cicer arietinum L. HOM05D004227 ORTHO05D005027 3.9e-71 271.6 156 85.9
MD07G1109700 Malus domestica HOM05D004227 ORTHO05D005027 3.9e-71 271.6 156 85.3
Aqoxy3G01907 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 5.1e-71 271.2 156 85.9
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea HOM05D004227 ORTHO05D005027 5.1e-71 271.2 156 85.9
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea HOM05D004227 ORTHO05D005027 5.1e-71 271.2 156 85.9
CsaV3_3G007250 Cucumis sativus L. HOM05D004227 ORTHO05D005027 5.1e-71 271.2 155 86.5
Psat5g001800 Pisum sativum HOM05D004227 ORTHO05D005027 5.1e-71 271.2 156 85.9
Rhsim03G0159900 Rhododendron simsii HOM05D004227 ORTHO05D005027 5.1e-71 271.2 160 85.6
HPP92_014889 Vanilla planifolia HOM05D004227 ORTHO05D005027 5.1e-71 271.2 154 85.7
HPP92_014893 Vanilla planifolia HOM05D004227 ORTHO05D005027 5.1e-71 271.2 154 85.7
ECA232G0872 Erigeron canadensis HOM05D004227 ORTHO05D005027 6.7e-71 270.8 154 87.0
HanXRQChr09g0252831 Helianthus annuus HOM05D004227 ORTHO05D005027 6.7e-71 270.8 154 87.0
Nitab4.5_0003321g0070 Nicotiana tabacum HOM05D004227 ORTHO05D005027 6.7e-71 270.8 157 84.7
Dinv44054 Davidia involucrata HOM05D004227 ORTHO05D005027 8.7e-71 270.4 156 85.3
Lj3g0003497 Lotus japonicus HOM05D004227 ORTHO05D005027 8.7e-71 270.4 156 85.9
Medtr3g118110 Medicago truncatula HOM05D004227 ORTHO05D005027 8.7e-71 270.4 156 85.9
Prupe.2G133100 Prunus persica HOM05D004227 ORTHO05D005027 8.7e-71 270.4 156 84.6
TPR.G38529 Trifolium pratense HOM05D004227 ORTHO05D005027 8.7e-71 270.4 156 85.9
Glyma.03G109200 Glycine max HOM05D004227 ORTHO05D005027 1.1e-70 270.0 156 85.3
Nitab4.5_0002359g0040 Nicotiana tabacum HOM05D004227 ORTHO05D005027 1.1e-70 270.0 157 84.7
Aqoxy91s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.5e-70 269.6 156 85.9
MSTRG.27225 Avicennia marina HOM05D004227 ORTHO05D005027 1.5e-70 269.6 156 85.3
COL.COLO4_14773 Corchorus olitorius HOM05D004227 ORTHO05D005027 1.5e-70 269.6 156 85.9
SEGI_06195 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.5e-70 269.6 156 85.3
SEGI_27062 Sequoiadendron giganteum HOM05D004227 ORTHO05D005027 1.5e-70 269.6 156 85.3
CANSAT25G0195 Cannabis sativa HOM05D004227 ORTHO05D005027 1.9e-70 269.2 156 84.0
Phvul.006G161800 Phaseolus vulgaris HOM05D004227 ORTHO05D005027 1.9e-70 269.2 156 85.3
Potri.002G138500 Populus trichocarpa HOM05D004227 ORTHO05D005027 1.9e-70 269.2 152 87.5
Sed0011885 Sechium edule HOM05D004227 ORTHO05D005027 1.9e-70 269.2 155 85.2
Actinidia13618 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.5e-70 268.9 158 84.8
Actinidia31661 Actinidia chinensis HOM05D004227 ORTHO05D005027 2.5e-70 268.9 158 84.8
HanXRQChr15g0493591 Helianthus annuus HOM05D004227 ORTHO05D005027 2.5e-70 268.9 152 87.5
Lsat_1_v5_gn_0_10121 Lactuca sativa HOM05D004227 ORTHO05D005027 2.5e-70 268.9 152 87.5
Sp1g00120 Schrenkiella parvula HOM05D004227 ORTHO05D005027 2.5e-70 268.9 143 93.0
Glyma.15G097500 Glycine max HOM05D004227 ORTHO05D005027 3.3e-70 268.5 156 84.6
PGR004G2111 Punica granatum HOM05D004227 ORTHO05D005027 3.3e-70 268.5 156 84.6
CAN.G460.2 Capsicum annuum HOM05D004227 ORTHO05D005027 5.6e-70 267.7 157 84.7
FAN01G2506 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.6e-70 267.7 156 83.3
FAN03G2167 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.6e-70 267.7 156 83.3
FAN06G3355 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.6e-70 267.7 156 83.3
FAN10G0507 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.6e-70 267.7 156 83.3
FAN10G0749 Fragaria x ananassa HOM05D004227 ORTHO05D005027 5.6e-70 267.7 156 83.3
RcHm_v2.0_Chr1g0348061 Rosa chinensis HOM05D004227 ORTHO05D005027 5.6e-70 267.7 156 83.3
unitig_46.g18760 Utricularia gibba HOM05D004227 ORTHO05D005027 7.4e-70 267.3 156 83.3
Lalb_Chr06g0171081 Lupinus albus HOM05D004227 ORTHO05D005027 9.6e-70 266.9 156 84.0
PGR004G2481 Punica granatum HOM05D004227 ORTHO05D005027 9.6e-70 266.9 156 83.3
FAN06G2246 Fragaria x ananassa HOM05D004227 ORTHO05D005027 1.3e-69 266.5 156 82.7
Eucgr.D01223 Eucalyptus grandis HOM05D004227 ORTHO05D005027 1.6e-69 266.2 156 84.0
Pp3c1_16440 Physcomitrium patens HOM05D004227 ORTHO05D005027 4.8e-69 264.6 156 82.7
Pp3c2_21720 Physcomitrium patens HOM05D004227 ORTHO05D005027 4.8e-69 264.6 156 82.7
Cfa009863 Carpinus fangiana HOM05D004227 ORTHO05D005027 8.2e-69 263.8 156 83.3
QL04p029953 Quercus lobata HOM05D004227 ORTHO05D005027 1.1e-68 263.5 155 83.2
QL07p006029 Quercus lobata HOM05D004227 ORTHO05D005027 1.1e-68 263.5 155 83.2
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis HOM05D004227 ORTHO05D005027 4.0e-68 261.5 156 81.4
Zm00001eb174310 Zea mays HOM05D004227 ORTHO05D005027 4.0e-68 261.5 155 81.9
Mapoly0032s0045 Marchantia polymorpha HOM05D004227 ORTHO05D005027 6.9e-68 260.8 156 81.4
Os12g0287200 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 9.0e-68 260.4 151 84.1
A09p69360 Brassica napus HOM05D004227 ORTHO05D005027 1.5e-67 259.6 157 84.1
BraA09t42281Z Brassica rapa HOM05D004227 ORTHO05D005027 2.0e-67 259.2 157 84.1
CiPaw.14G019900 Carya illinoinensis HOM05D004227 ORTHO05D005027 7.6e-67 257.3 152 82.2
Os08g0107900 Oryza sativa ssp. japonica HOM05D004227 ORTHO05D005027 1.0e-66 256.9 151 83.4
Zm00001eb260270 Zea mays HOM05D004227 ORTHO05D005027 8.4e-66 253.8 151 81.5
Rhsim13G0168500 Rhododendron simsii HOM05D004227 ORTHO05D005027 7.1e-65 250.8 155 82.6
Lalb_Chr01g0012541 Lupinus albus HOM05D004227 ORTHO05D005027 3.0e-63 245.4 146 82.2
Aa31LG1G11540 Aethionema arabicum HOM05D004227 ORTHO05D005027 1.1e-62 243.4 136 88.2
PGSC0003DMG400021002 Solanum tuberosum HOM05D004227 ORTHO05D005027 2.8e-61 238.8 140 83.6
MBI19_g27175_MAGBIO Magnolia biondii HOM05D004227 ORTHO05D005027 3.7e-61 238.4 136 86.0
Peaxi162Scf00304g01023 Petunia axillaris HOM05D004227 ORTHO05D005027 4.8e-61 238.0 157 77.1
Nitab4.5_0004457g0020 Nicotiana tabacum HOM05D004227 ORTHO05D005027 6.3e-61 237.7 153 79.1
AUR62039531 Chenopodium quinoa HOM05D004227 ORTHO05D005027 8.2e-61 237.3 136 86.0
Oeu030870.1 Olea europaea HOM05D004227 ORTHO05D005027 8.2e-61 237.3 137 84.7
Atru.chr2.217 Acer truncatum HOM05D004227 ORTHO05D005027 1.1e-60 236.9 140 84.3
TAR629G1537 Trochodendron aralioides HOM05D004227 ORTHO05D005027 1.4e-60 236.5 136 85.3
Aqoxy109s003 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.8e-60 236.1 151 78.1
Lj9A555T36 Lonicera japonica HOM05D004227 ORTHO05D005027 1.8e-60 236.1 136 83.8
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 3.1e-60 235.3 136 84.6
Aqoxy3G01910 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 4.1e-60 235.0 136 84.6
ClCG05G000140 Citrullus lanatus HOM05D004227 ORTHO05D005027 4.1e-60 235.0 135 85.2
MELO3C005946.2 Cucumis melo HOM05D004227 ORTHO05D005027 4.1e-60 235.0 135 85.2
Peaxi162Scf01305g00032 Petunia axillaris HOM05D004227 ORTHO05D005027 4.1e-60 235.0 137 84.7
FvH4_7g10360 Fragaria vesca HOM05D004227 ORTHO05D005027 6.9e-60 234.2 150 76.0
SalBow3G0312 Salvia bowleyana HOM05D004227 ORTHO05D005027 6.9e-60 234.2 137 83.2
unitig_37.g12485 Utricularia gibba HOM05D004227 ORTHO05D005027 6.9e-60 234.2 135 84.4
SalBow3G4020 Salvia bowleyana HOM05D004227 ORTHO05D005027 9.0e-60 233.8 135 83.7
vmacro05443 Vaccinium macrocarpon HOM05D004227 ORTHO05D005027 1.2e-59 233.4 148 80.4
Lj7A548G44 Lonicera japonica HOM05D004227 ORTHO05D005027 1.5e-59 233.0 135 83.7
Oeu046442.1 Olea europaea HOM05D004227 ORTHO05D005027 2.0e-59 232.6 136 83.8
Sabra02G0107500 Salix brachista HOM05D004227 ORTHO05D005027 3.4e-59 231.9 148 78.4
MCO04G284 Micromonas commoda HOM05D004227 ORTHO05D005027 1.6e-56 223.0 153 68.0
SGA_v2.0_scaffold60G20835 Striga asiatica HOM05D004227 ORTHO05D005027 2.1e-56 222.6 134 81.3
Cre09.g392692 Chlamydomonas reinhardtii HOM05D004227 ORTHO05D005027 3.0e-55 218.8 153 66.7
Haze_23235 Corylus avellana HOM05D004227 ORTHO05D005027 3.3e-54 215.3 190 60.5
Medtr3g109260 Medicago truncatula HOM05D004227 ORTHO05D005027 4.8e-53 211.5 155 67.1
ATR0090G010 Amborella trichopoda HOM05D004227 ORTHO05D005027 6.3e-53 211.1 161 68.3
C08p54180 Brassica napus HOM05D004227 ORTHO05D005027 1.8e-52 209.5 115 92.2
Pp3c1_16390 Physcomitrium patens HOM05D004227 ORTHO05D005027 1.9e-49 199.5 152 67.8
SHI13620 Sapria himalayana HOM05D004227 ORTHO05D005027 3.2e-49 198.7 130 73.1
CiPaw.13G025400 Carya illinoinensis HOM05D004227 ORTHO05D005027 2.3e-47 192.6 124 76.6
Lsat_1_v5_gn_2_127120 Lactuca sativa HOM05D004227 ORTHO05D005027 6.9e-44 181.0 111 82.0
Haze_27249 Corylus avellana HOM05D004227 ORTHO05D005027 2.6e-43 179.1 124 68.5
GSVIVG01013876001 Vitis vinifera HOM05D004227 ORTHO05D005027 2.6e-43 179.1 111 81.1
Cc02_g04830 Coffea canephora HOM05D004227 ORTHO05D005027 4.5e-43 178.3 111 82.0
CDE06G1723 Ceratophyllum demersum HOM05D004227 ORTHO05D005027 6.7e-39 164.5 95 84.2
CBR_g19771 Chara braunii HOM05D004227 ORTHO05D005027 1.0e-34 150.6 80 90.0
Atru.chr5.117 Acer truncatum HOM05D004227 ORTHO05D005027 1.5e-33 146.7 87 81.6
VMungo0540G1169 Vigna mungo HOM05D004227 ORTHO05D005027 1.9e-33 146.4 91 75.8
HPP92_020677 Vanilla planifolia HOM05D004227 ORTHO05D005027 1.2e-32 143.7 136 58.1
Rhsim13G0168700 Rhododendron simsii HOM05D004227 ORTHO05D005027 1.2e-30 137.1 71 94.4
MD00G1129300 Malus domestica HOM05D004227 ORTHO05D005027 4.8e-29 131.7 69 85.5
Aqoxy3G01908 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.2e-24 117.1 79 75.9
Aqoxy91s002 Aquilegia oxysepala HOM05D004227 ORTHO05D005027 1.0e-23 114.0 79 74.7
Aqoxy3G01911 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 5.2e-23 111.7 79 73.4
Actinidia01038 Actinidia chinensis HOM05D004227 ORTHO05D005027 9.8e-22 107.5 85 69.4
Sed0011381 Sechium edule HOM05D004227 ORTHO05D373379 4.0e-15 85.5 45 93.3
Aqoxy109s002 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 2.6e-14 82.8 46 84.8
Haze_23858 Corylus avellana HOM05D004227 ORTHO05D034883 7.0e-12 74.7 52 67.3


User provided reference genes

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