Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 1.4e-128 463.0 238 100.0
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 1.4e-128 463.0 238 100.0
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 9.9e-127 456.8 238 99.6
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 3.0e-115 418.7 241 93.4
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 1.4e-107 393.3 228 93.0
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 5.0e-94 348.2 249 78.3
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 5.0e-94 348.2 249 78.3
BcaC06g31740 Brassica carinata HOM05D003792 ORTHO05D003195 1.1e-93 347.1 242 82.2
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 6.3e-89 331.3 246 76.4
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 2.0e-79 299.7 252 70.6
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 2.9e-78 295.8 238 70.6
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 4.0e-75 285.4 244 70.5
BcaB07g31033 Brassica carinata HOM05D003792 ORTHO05D003195 2.0e-74 283.1 237 68.4
A09p20080 Brassica napus HOM05D003792 ORTHO05D003195 1.7e-73 280.0 239 69.0
BraA09t37621Z Brassica rapa HOM05D003792 ORTHO05D003195 1.7e-73 280.0 239 69.0
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 4.8e-73 278.5 254 67.7
Carub.0008s0601 Capsella rubella HOM05D003792 ORTHO05D003195 2.0e-71 273.1 243 67.1
BcaC04g21959 Brassica carinata HOM05D003792 ORTHO05D003195 2.3e-70 269.6 238 67.6
CARHR181240 Cardamine hirsuta HOM05D003792 ORTHO05D003195 3.8e-62 242.3 243 63.4
C09p25480 Brassica napus HOM05D003792 ORTHO05D003195 6.6e-62 241.5 219 66.2
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 1.2e-47 194.1 256 52.7
THA.LOC104814167 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 3.6e-36 156.0 258 50.4
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 1.4e-35 154.1 251 47.4
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 8.7e-30 134.8 232 42.2
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.6e-26 123.2 209 43.1
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 2.9e-25 119.8 230 42.2
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 6.4e-25 118.6 206 39.8
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 7.1e-24 115.2 216 38.0
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 9.3e-24 114.8 212 41.0
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 9.3e-24 114.8 237 40.5
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 1.6e-23 114.0 212 41.0
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 1.6e-23 114.0 211 41.2
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 2.1e-23 113.6 235 40.9
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 6.0e-23 112.1 199 40.7
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 7.8e-23 111.7 200 40.5
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 7.8e-23 111.7 237 37.6
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 7.8e-23 111.7 245 36.7
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.0e-22 111.3 199 41.7
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 1.7e-22 110.5 245 38.0
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 1.7e-22 110.5 219 37.4
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 6.6e-22 108.6 231 35.9
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.6e-22 108.6 215 40.0
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 8.7e-22 108.2 199 41.2
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 8.7e-22 108.2 247 36.8
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 8.7e-22 108.2 213 39.4
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.1e-21 107.8 238 35.7
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 1.1e-21 107.8 239 38.5
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 1.1e-21 107.8 217 39.2
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 3.3e-21 106.3 207 39.6
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 7.3e-21 105.1 223 36.8
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 7.3e-21 105.1 218 39.0
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.3e-20 104.4 239 35.6
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 1.3e-20 104.4 254 35.4
Gohir.D01G108300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 3.6e-20 102.8 196 39.8
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 3.6e-20 102.8 241 38.2
Gohir.A01G120000 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.2e-20 102.1 199 39.7
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 1.4e-19 100.9 253 36.4
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 1.4e-19 100.9 237 35.4
Gorai.002G132500 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.8e-19 100.5 196 39.8
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 2.4e-19 100.1 239 33.5
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 3.1e-19 99.8 203 38.4
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 4.0e-19 99.4 228 39.0
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 4.0e-19 99.4 208 36.1
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 1.2e-18 97.8 209 38.8
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 1.2e-18 97.8 233 35.2
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 2.0e-18 97.1 257 33.5
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 2.0e-18 97.1 195 37.9
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 2.6e-18 96.7 199 40.7
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 2.6e-18 96.7 202 39.6
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 2.6e-18 96.7 195 36.9
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 3.4e-18 96.3 240 34.6
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 2.9e-17 93.2 234 36.3
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 4.9e-17 92.4 234 34.2
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 4.9e-17 92.4 214 36.0
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.4e-17 92.0 142 39.4
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 6.4e-17 92.0 200 38.0
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 6.4e-17 92.0 211 37.9
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 8.4e-17 91.7 203 37.4
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.1e-16 91.3 200 35.5
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 1.1e-16 91.3 227 32.6
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 1.9e-16 90.5 212 36.8
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 2.4e-16 90.1 202 36.1
Ciclev10002531m.g Citrus clementina HOM05D003792 ORTHO05D003195 3.2e-16 89.7 204 35.3
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 3.2e-16 89.7 223 31.8
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 4.2e-16 89.4 197 37.6
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 5.4e-16 89.0 219 35.2
Medtr1g019360 Medicago truncatula HOM05D003792 ORTHO05D003195 7.1e-16 88.6 184 35.3
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 7.1e-16 88.6 195 37.9
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 9.3e-16 88.2 222 35.1
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 9.3e-16 88.2 206 35.4
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 9.3e-16 88.2 232 34.1
Sc02g0007160 Simmondsia chinensis HOM05D003792 ORTHO05D003195 9.3e-16 88.2 220 35.9
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 1.2e-15 87.8 206 35.4
Migut.N02709 Erythranthe guttata HOM05D003792 ORTHO05D003195 1.2e-15 87.8 216 34.7
Sabra02G0098600 Salix brachista HOM05D000207 ORTHO05D003195 1.2e-15 87.8 244 32.8
Lj5g0016368 Lotus japonicus HOM05D003792 ORTHO05D003195 2.1e-15 87.0 202 34.2
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 2.7e-15 86.7 175 37.1
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 4.6e-15 85.9 194 34.0
Lalb_Chr14g0368651 Lupinus albus HOM05D003792 ORTHO05D003195 1.0e-14 84.7 170 36.5
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 1.0e-14 84.7 190 37.9
Hund23000 Selenicereus undatus HOM05D003792 ORTHO05D003195 1.0e-14 84.7 156 36.5
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.8e-14 84.0 142 38.0
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 2.3e-14 83.6 235 34.5
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 2.3e-14 83.6 223 32.3
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 5.1e-14 82.4 206 32.5
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 5.1e-14 82.4 206 32.5
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 5.1e-14 82.4 220 31.8
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 6.7e-14 82.0 230 30.4
MELO3C016754.2 Cucumis melo HOM05D003792 ORTHO05D003195 6.7e-14 82.0 183 35.0
CsaV3_4G034340 Cucumis sativus L. HOM05D003792 ORTHO05D003195 8.7e-14 81.6 201 34.8
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 4.3e-13 79.3 224 31.7
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 5.6e-13 79.0 222 34.2
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 9.6e-13 78.2 228 34.2
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 1.3e-12 77.8 260 32.3
PGR083G2840 Punica granatum HOM05D003792 ORTHO05D003195 2.1e-12 77.0 185 34.6
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 2.8e-12 76.6 193 35.2
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 3.7e-12 76.3 199 31.7
Psat6g012520 Pisum sativum HOM05D003792 ORTHO05D003195 3.7e-12 76.3 117 39.3
SalBow7G2289 Salvia bowleyana HOM05D003792 ORTHO05D003195 6.2e-12 75.5 125 37.6
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 1.4e-11 74.3 247 30.4
Rhsim07G0228200 Rhododendron simsii HOM05D003792 ORTHO05D003195 2.4e-11 73.6 279 29.0
Sed0003020 Sechium edule HOM05D003792 ORTHO05D003195 3.1e-11 73.2 227 29.5
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 9.0e-11 71.6 124 38.7
HanXRQChr05g0150801 Helianthus annuus HOM05D003792 ORTHO05D003195 1.5e-10 70.9 167 34.1
Lsat_1_v5_gn_6_111920 Lactuca sativa HOM05D003792 ORTHO05D003195 1.5e-10 70.9 199 31.2
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 5.8e-10 68.9 242 29.8
TPR.G12693 Trifolium pratense HOM05D003792 ORTHO05D003195 5.8e-10 68.9 234 31.6
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 1.0e-09 68.2 272 29.4
ECA232G3551 Erigeron canadensis HOM05D003792 ORTHO05D003195 1.3e-09 67.8 227 33.5
HanXRQChr14g0439641 Helianthus annuus HOM05D003792 ORTHO05D003195 1.3e-09 67.8 228 30.7
PGR042G0828 Punica granatum HOM05D003792 ORTHO05D003195 1.3e-09 67.8 223 33.6
Migut.C00575 Erythranthe guttata HOM05D003792 ORTHO05D003195 1.7e-09 67.4 215 30.2
SGA_v2.0_scaffold14G07003 Striga asiatica HOM05D000207 ORTHO05D000606 1.7e-09 67.4 82 48.8
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 2.9e-09 66.6 190 32.1
HanXRQChr09g0267581 Helianthus annuus HOM05D003792 ORTHO05D003195 2.9e-09 66.6 198 32.3
Zm00001eb006310 Zea mays HOM05D003792 ORTHO05D003195 3.8e-09 66.2 183 33.9
Ah.11g043080 Amaranthus hybridus HOM05D003792 ORTHO05D003195 6.4e-09 65.5 137 34.3
Aqoxy5G01231 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 8.4e-09 65.1 218 32.6
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.4e-08 64.3 213 30.5
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 1.4e-08 64.3 98 44.9
MBI03_g13463_MAGBIO Magnolia biondii HOM05D003792 ORTHO05D003195 1.9e-08 63.9 184 34.2
EL10As7g23733 Beta vulgaris HOM05D003792 ORTHO05D003195 2.5e-08 63.5 207 31.4
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 2.5e-08 63.5 230 29.1
Oeu025580.1 Olea europaea HOM05D003792 ORTHO05D003195 3.2e-08 63.2 228 29.4
Atru.chr5.2692 Acer truncatum HOM05D003792 ORTHO05D003195 5.5e-08 62.4 231 31.6
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 5.5e-08 62.4 161 33.5
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 5.5e-08 62.4 203 30.0
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 9.3e-08 61.6 195 29.7
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 9.3e-08 61.6 203 29.6
Lj5C209G18 Lonicera japonica HOM05D003792 ORTHO05D003195 1.6e-07 60.8 144 31.9
SGA_v2.0_scaffold28G11774 Striga asiatica HOM05D000207 ORTHO05D000606 1.6e-07 60.8 222 32.4
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 1.6e-07 60.8 200 30.5
CDE08G1351 Ceratophyllum demersum HOM05D003792 ORTHO05D003195 2.1e-07 60.5 105 39.0
AUR62042730 Chenopodium quinoa HOM05D043499 ORTHO05D003195 2.1e-07 60.5 204 29.4
Os03g0184100 Oryza sativa ssp. japonica HOM05D003792 ORTHO05D003195 2.1e-07 60.5 199 32.7
Cc02_g18840 Coffea canephora HOM05D011234 ORTHO05D003195 2.7e-07 60.1 240 30.4
Prupe.8G126300 Prunus persica HOM05D003792 ORTHO05D003195 2.7e-07 60.1 106 37.7
MSTRG.25091 Avicennia marina HOM05D003792 ORTHO05D003195 3.5e-07 59.7 231 28.6
SGA_v2.0_scaffold32G13060 Striga asiatica HOM05D003792 ORTHO05D003195 1.3e-06 57.8 207 29.5
ClCG02G005970 Citrullus lanatus HOM05D003792 ORTHO05D003195 2.3e-06 57.0 225 31.1
PSO170G6463 Papaver somniferum HOM05D003792 ORTHO05D003195 2.3e-06 57.0 205 31.2
unitig_8.g3371 Utricularia gibba HOM05D061388 ORTHO05D003195 3.0e-06 56.6 48 56.2
Ciclev10029147m.g Citrus clementina HOM05D003792 ORTHO05D003195 3.9e-06 56.2 236 31.4
Lj4g0023306 Lotus japonicus HOM05D003792 ORTHO05D003195 5.1e-06 55.8 225 26.7
Glyma.07G213000 Glycine max HOM05D003792 ORTHO05D003195 6.7e-06 55.5 222 30.6


User provided reference genes

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