Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 4.1e-57 224.6 117 100.0
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 4.1e-57 224.6 117 100.0
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 7.7e-56 220.3 117 99.1
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 1.3e-55 219.5 117 97.4
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 1.5e-54 216.1 117 96.6
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 4.1e-49 198.0 117 88.0
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 4.1e-49 198.0 117 88.0
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 1.6e-48 196.1 117 87.2
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 1.6e-48 196.1 117 87.2
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 1.6e-48 196.1 117 87.2
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 2.7e-48 195.3 117 86.3
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 2.7e-48 195.3 117 86.3
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 1.0e-47 193.4 117 87.2
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 1.0e-47 193.4 117 87.2
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 7.2e-46 187.2 117 85.5
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 5.7e-43 177.6 118 82.2
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 5.7e-43 177.6 118 82.2
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 4.8e-42 174.5 118 82.2
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 4.8e-42 174.5 123 80.5
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 3.1e-41 171.8 118 79.7
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 3.1e-41 171.8 118 79.7
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 3.1e-41 171.8 119 79.0
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 4.1e-41 171.4 119 77.3
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.5e-38 162.9 119 76.5
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 3.5e-32 141.7 119 66.4
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 8.6e-31 137.1 125 65.6
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 1.5e-30 136.3 118 66.1
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 1.5e-30 136.3 118 66.1
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 1.5e-30 136.3 118 66.1
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 3.3e-30 135.2 119 65.5
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 7.3e-30 134.0 118 66.1
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 9.5e-30 133.7 118 66.1
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 2.1e-29 132.5 118 64.4
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 2.8e-29 132.1 119 63.9
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 1.8e-28 129.4 118 62.7
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 5.2e-28 127.9 118 61.9
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 8.9e-28 127.1 119 60.5
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.2e-27 126.7 119 59.7
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 2.6e-27 125.6 119 63.0
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 2.6e-27 125.6 126 57.9
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 6.0e-24 114.4 109 62.4
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 6.0e-24 114.4 109 62.4
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 6.0e-24 114.4 109 62.4
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 1.4e-17 93.2 89 56.2
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 3.2e-17 92.0 64 68.8
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 3.2e-17 92.0 69 63.8
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 7.0e-17 90.9 124 50.8
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 1.2e-16 90.1 76 56.6
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 1.2e-16 90.1 91 52.7
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 1.6e-16 89.7 88 51.1
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 2.1e-16 89.4 62 67.7
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 2.7e-16 89.0 101 51.5
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.7e-16 89.0 74 60.8
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 3.5e-16 88.6 70 58.6
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 4.6e-16 88.2 66 63.6
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 4.6e-16 88.2 66 63.6
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 4.6e-16 88.2 80 55.0
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 4.6e-16 88.2 69 60.9
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 4.6e-16 88.2 99 48.5
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 6.0e-16 87.8 66 60.6
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 7.8e-16 87.4 129 43.4
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.0e-15 87.0 66 62.1
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.0e-15 87.0 66 62.1
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.0e-15 87.0 90 48.9
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 1.3e-15 86.7 62 67.7
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 1.3e-15 86.7 65 58.5
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 1.3e-15 86.7 61 67.2
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 2.3e-15 85.9 62 64.5
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 2.3e-15 85.9 65 56.9
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 3.9e-15 85.1 61 65.6
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 3.9e-15 85.1 61 65.6
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 5.1e-15 84.7 86 46.5
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 5.1e-15 84.7 63 58.7
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 5.1e-15 84.7 62 66.1
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 5.1e-15 84.7 62 66.1
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 5.1e-15 84.7 80 48.8
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 6.6e-15 84.3 93 47.3
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.1e-14 83.6 77 57.1
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 2.5e-14 82.4 65 56.9
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 3.3e-14 82.0 61 62.3
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 3.3e-14 82.0 64 62.5
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 5.6e-14 81.3 66 56.1
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 1.2e-13 80.1 61 60.7
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 2.1e-13 79.3 127 37.8
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 2.8e-13 79.0 116 41.4
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 3.6e-13 78.6 63 55.6
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 8.1e-13 77.4 89 47.2
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 1.4e-12 76.6 72 50.0
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 2.3e-12 75.9 78 43.6
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 4.0e-12 75.1 116 39.7
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 4.0e-12 75.1 58 58.6
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 5.2e-12 74.7 54 63.0
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 5.2e-12 74.7 69 50.7
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 6.8e-12 74.3 114 44.7
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 8.9e-12 73.9 61 54.1
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 1.5e-11 73.2 70 51.4
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 2.6e-11 72.4 117 38.5
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 7.5e-11 70.9 62 48.4
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 2.9e-10 68.9 59 54.2
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 3.7e-10 68.6 110 40.0
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.9e-10 68.2 67 47.8
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.9e-10 68.2 67 47.8
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 1.1e-09 67.0 87 41.4
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 5.4e-09 64.7 94 42.6
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 7.1e-09 64.3 66 45.5
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 1.6e-08 63.2 50 56.0
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 1.6e-08 63.2 53 52.8
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 1.6e-08 63.2 53 52.8
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 6.6e-07 57.8 62 41.9
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.5e-06 56.6 56 42.9


User provided reference genes

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